RNA–Protein interactions for RNA: ENST00000503468.5

NEDD4-204, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best)

Gene NEDD4, Length 6,339 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-204ENST00000503468 TTC22Q5TAA0 569 aa3.3□□□□□ -1.88
NEDD4-204ENST00000503468 GGT6Q6P531 493 aa3.3□□□□□ -1.88
NEDD4-204ENST00000503468 MYCBPQ99417 103 aaPredicted RBP3.3□□□□□ -1.88
NEDD4-204ENST00000503468 MYH4Q9Y623 1939 aa3.3□□□□□ -1.88
NEDD4-204ENST00000503468 IGKV6D-21A0A0A0MT36 114 aa3.3□□□□□ -1.88
NEDD4-204ENST00000503468 APAF1O14727 1248 aa3.3□□□□□ -1.88
NEDD4-204ENST00000503468 KIF1CO43896 1103 aaKnown RBP3.3□□□□□ -1.88
NEDD4-204ENST00000503468 FAM163BP0C2L3 166 aa3.3□□□□□ -1.88
NEDD4-204ENST00000503468 GSCP56915 257 aaPredicted RBP3.3□□□□□ -1.88
NEDD4-204ENST00000503468 ZKSCAN2Q63HK3 967 aa3.3□□□□□ -1.88
NEDD4-204ENST00000503468 ZBTB38Q8NAP3 1195 aaPredicted RBP3.3□□□□□ -1.88
NEDD4-204ENST00000503468 TEPSINQ96N21 525 aa3.3□□□□□ -1.88
NEDD4-204ENST00000503468 PANK2Q9BZ23 570 aa3.3□□□□□ -1.88
NEDD4-204ENST00000503468 GPR75-ASB3A0A0A6YYF3 556 aa3.29□□□□□ -1.88
NEDD4-204ENST00000503468 IPO8O15397 1037 aaKnown RBP3.29□□□□□ -1.88
NEDD4-204ENST00000503468 TPM1P09493 284 aa3.29□□□□□ -1.88
NEDD4-204ENST00000503468 BMS1Q14692 1282 aaKnown RBP3.29□□□□□ -1.88
NEDD4-204ENST00000503468 TRAIPQ9BWF2 469 aa3.29□□□□□ -1.88
NEDD4-204ENST00000503468 PDLIM7Q9NR12 457 aa3.29□□□□□ -1.88
NEDD4-204ENST00000503468 RCOR1Q9UKL0 485 aa3.29□□□□□ -1.88
NEDD4-204ENST00000503468 ST18O60284 1047 aa3.29□□□□□ -1.88
NEDD4-204ENST00000503468 TAF5LO75529 589 aa3.29□□□□□ -1.88
NEDD4-204ENST00000503468 MCCP23508 829 aa3.29□□□□□ -1.88
NEDD4-204ENST00000503468 PDE1AP54750 535 aa3.29□□□□□ -1.88
NEDD4-204ENST00000503468 NLRP10Q86W26 655 aa3.29□□□□□ -1.88
NEDD4-204ENST00000503468 MED15Q96RN5 788 aa3.29□□□□□ -1.88
NEDD4-204ENST00000503468 FUT8Q9BYC5 575 aa3.29□□□□□ -1.88
NEDD4-204ENST00000503468 GZF1Q9H116 711 aaPredicted RBP3.29□□□□□ -1.88
NEDD4-204ENST00000503468 ZHX1Q9UKY1 873 aaPredicted RBP3.29□□□□□ -1.88
NEDD4-204ENST00000503468 hCG_1984214I3L0E3 225 aa3.29□□□□□ -1.88
NEDD4-204ENST00000503468 LCA5LO95447 670 aa3.29□□□□□ -1.88
NEDD4-204ENST00000503468 PRPHP41219 470 aa3.29□□□□□ -1.88
NEDD4-204ENST00000503468 HADHBP55084 474 aaKnown RBP3.29□□□□□ -1.88
NEDD4-204ENST00000503468 POU5F1BQ06416 359 aa3.29□□□□□ -1.88
NEDD4-204ENST00000503468 MUM1L1Q5H9M0 696 aa3.29□□□□□ -1.88
NEDD4-204ENST00000503468 TXLNBQ8N3L3 684 aa3.29□□□□□ -1.88
NEDD4-204ENST00000503468 ZNF713Q8N859 430 aaPredicted RBP3.29□□□□□ -1.88
NEDD4-204ENST00000503468 SMARCC1Q92922 1105 aaPredicted RBP3.29□□□□□ -1.88
NEDD4-204ENST00000503468 CDCA7LQ96GN5 454 aa3.29□□□□□ -1.88
NEDD4-204ENST00000503468 COG3Q96JB2 828 aa3.29□□□□□ -1.88
NEDD4-204ENST00000503468 RASSF4Q9H2L5 321 aa3.29□□□□□ -1.88
NEDD4-204ENST00000503468 TMEM51Q9NW97 253 aa3.29□□□□□ -1.88
NEDD4-204ENST00000503468 TACC3Q9Y6A5 838 aa3.29□□□□□ -1.88
NEDD4-204ENST00000503468 MYLKQ15746 1914 aa3.29□□□□□ -1.88
NEDD4-204ENST00000503468 PRKAR2BP31323 418 aa3.29□□□□□ -1.88
NEDD4-204ENST00000503468 PTPAQ15257 358 aa3.29□□□□□ -1.88
NEDD4-204ENST00000503468 VSIG1Q86XK7 387 aa3.29□□□□□ -1.88
NEDD4-204ENST00000503468 PIGBQ92521 554 aa3.29□□□□□ -1.88
NEDD4-204ENST00000503468 KCNMB3Q9NPA1 279 aa3.29□□□□□ -1.88
NEDD4-204ENST00000503468 TRIM66O15016 1216 aa3.29□□□□□ -1.88
NEDD4-204ENST00000503468 IVLP07476 585 aa3.29□□□□□ -1.88
NEDD4-204ENST00000503468 RASA1P20936 1047 aa3.29□□□□□ -1.88
NEDD4-204ENST00000503468 SPIRE1Q08AE8 756 aa3.29□□□□□ -1.88
NEDD4-204ENST00000503468 FKBP5Q13451 457 aaPredicted RBP3.29□□□□□ -1.88
NEDD4-204ENST00000503468 MOGSQ13724 837 aa3.29□□□□□ -1.88
NEDD4-204ENST00000503468 SNRPA1P09661 255 aaKnown RBP3.28□□□□□ -1.88
NEDD4-204ENST00000503468 KCNJ4P48050 445 aa3.28□□□□□ -1.88
NEDD4-204ENST00000503468 RTP1P59025 263 aa3.28□□□□□ -1.88
NEDD4-204ENST00000503468 KRT28Q7Z3Y7 464 aa3.28□□□□□ -1.88
NEDD4-204ENST00000503468 CCDC112Q8NEF3 446 aa3.28□□□□□ -1.88
NEDD4-204ENST00000503468 RSPH1Q8WYR4 309 aa3.28□□□□□ -1.88
NEDD4-204ENST00000503468 MAP3K20Q9NYL2 800 aaKnown RBP3.28□□□□□ -1.88
NEDD4-204ENST00000503468 GFRA2O00451 464 aa3.28□□□□□ -1.88
NEDD4-204ENST00000503468 CLEC16AQ2KHT3 1053 aa3.28□□□□□ -1.88
NEDD4-204ENST00000503468 SUGP2Q8IX01 1082 aaKnown RBP eCLIP3.28□□□□□ -1.882e-6■■■□□ 17.5
NEDD4-204ENST00000503468 ZNF274Q96GC6 653 aaPredicted RBP3.28□□□□□ -1.88
NEDD4-204ENST00000503468 SRRTQ9BXP5 876 aaKnown RBP3.28□□□□□ -1.88
NEDD4-204ENST00000503468 SAMSN1Q9NSI8 373 aaKnown RBP3.28□□□□□ -1.88
NEDD4-204ENST00000503468 REC8O95072 547 aa3.28□□□□□ -1.88
NEDD4-204ENST00000503468 SLC4A3P48751 1232 aa3.28□□□□□ -1.88
NEDD4-204ENST00000503468 CCDC9Q9Y3X0 531 aaKnown RBP3.28□□□□□ -1.88
NEDD4-204ENST00000503468 STYXL1Q9Y6J8 313 aa3.28□□□□□ -1.88
NEDD4-204ENST00000503468 DENND4CQ5VZ89 1909 aa3.28□□□□□ -1.88
NEDD4-204ENST00000503468 SRRM3A6NNA2 597 aaPredicted RBP3.28□□□□□ -1.88
NEDD4-204ENST00000503468 A6NNZ2 444 aa3.28□□□□□ -1.88
NEDD4-204ENST00000503468 CCP110O43303 1012 aa3.28□□□□□ -1.88
NEDD4-204ENST00000503468 HOXC6P09630 235 aa3.28□□□□□ -1.88
NEDD4-204ENST00000503468 IL2RBP14784 551 aa3.28□□□□□ -1.88
NEDD4-204ENST00000503468 ZNF18P17022 549 aa3.28□□□□□ -1.88
NEDD4-204ENST00000503468 HOXA13P31271 388 aaPredicted RBP3.28□□□□□ -1.88
NEDD4-204ENST00000503468 EIF4EBP2Q13542 120 aaPredicted RBP3.28□□□□□ -1.88
NEDD4-204ENST00000503468 NBPF20Q3BBV1 942 aa3.28□□□□□ -1.88
NEDD4-204ENST00000503468 TUBB8Q3ZCM7 444 aa3.28□□□□□ -1.88
NEDD4-204ENST00000503468 HSP90AB3PQ58FF7 597 aa3.28□□□□□ -1.88
NEDD4-204ENST00000503468 NAA16Q6N069 864 aaPredicted RBP3.28□□□□□ -1.88
NEDD4-204ENST00000503468 CASC1Q6TDU7 716 aa3.28□□□□□ -1.88
NEDD4-204ENST00000503468 ILDR1Q86SU0 546 aaPredicted RBP3.28□□□□□ -1.88
NEDD4-204ENST00000503468 HMG20BQ9P0W2 317 aa3.28□□□□□ -1.88
NEDD4-204ENST00000503468 SLC45A1Q9Y2W3 748 aa3.28□□□□□ -1.88
NEDD4-204ENST00000503468 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP3.28□□□□□ -1.88
NEDD4-204ENST00000503468 CYP3A4P08684 503 aa3.28□□□□□ -1.89
NEDD4-204ENST00000503468 PTGER2P43116 358 aa3.28□□□□□ -1.89
NEDD4-204ENST00000503468 CEBPAP49715 358 aaPredicted RBP3.28□□□□□ -1.89
NEDD4-204ENST00000503468 ZNF131P52739 623 aa3.28□□□□□ -1.89
NEDD4-204ENST00000503468 LRSAM1Q6UWE0 723 aa3.28□□□□□ -1.89
NEDD4-204ENST00000503468 SIAH1Q8IUQ4 282 aa3.28□□□□□ -1.89
NEDD4-204ENST00000503468 ZSCAN29Q8IWY8 852 aaPredicted RBP3.28□□□□□ -1.89
NEDD4-204ENST00000503468 ACBD3Q9H3P7 528 aa3.28□□□□□ -1.89
NEDD4-204ENST00000503468 SPTLC3Q9NUV7 552 aa3.28□□□□□ -1.89
NEDD4-204ENST00000503468 ADAMTS9Q9P2N4 1935 aa3.28□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms