RNA–Protein interactions for RNA: ENST00000486741.5

HMGN1-216, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 4,299 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-216ENST00000486741 ZNF287Q9HBT7 754 aa15.22■□□□□ 0.03
HMGN1-216ENST00000486741 CBX8Q9HC52 389 aa15.22■□□□□ 0.03
HMGN1-216ENST00000486741 PIH1D3Q9NQM4 214 aaKnown RBP15.22■□□□□ 0.03
HMGN1-216ENST00000486741 FAM160A1Q05DH4 1040 aa15.21■□□□□ 0.03
HMGN1-216ENST00000486741 TOB2Q14106 344 aaPredicted RBP15.21■□□□□ 0.03
HMGN1-216ENST00000486741 TCEAL9Q9UHQ7 104 aa15.21■□□□□ 0.03
HMGN1-216ENST00000486741 USP17L12C9JPN9 530 aa15.21■□□□□ 0.03
HMGN1-216ENST00000486741 USP17L21D6R901 530 aa15.21■□□□□ 0.03
HMGN1-216ENST00000486741 CBFA2T2O43439 604 aa15.21■□□□□ 0.03
HMGN1-216ENST00000486741 KIF5BP33176 963 aa15.21■□□□□ 0.03
HMGN1-216ENST00000486741 PXDNQ92626 1479 aa15.21■□□□□ 0.03
HMGN1-216ENST00000486741 PLIN2Q99541 437 aa15.21■□□□□ 0.03
HMGN1-216ENST00000486741 GPR108Q9NPR9 543 aa15.21■□□□□ 0.03
HMGN1-216ENST00000486741 SRP68Q9UHB9 627 aaKnown RBP15.21■□□□□ 0.03
HMGN1-216ENST00000486741 DENND2AQ9ULE3 1009 aa15.21■□□□□ 0.03
HMGN1-216ENST00000486741 IFT172Q9UG01 1749 aa15.21■□□□□ 0.03
HMGN1-216ENST00000486741 ZNF771Q7L3S4 317 aaPredicted RBP15.21■□□□□ 0.03
HMGN1-216ENST00000486741 ATG9AQ7Z3C6 839 aa15.21■□□□□ 0.03
HMGN1-216ENST00000486741 TMEM87BQ96K49 555 aa15.21■□□□□ 0.03
HMGN1-216ENST00000486741 PATL2C9JE40 543 aaKnown RBP15.2■□□□□ 0.02
HMGN1-216ENST00000486741 STX17P56962 302 aa15.2■□□□□ 0.02
HMGN1-216ENST00000486741 AKNAD1Q5T1N1 836 aa15.2■□□□□ 0.02
HMGN1-216ENST00000486741 NSUN7Q8NE18 718 aaKnown RBP15.2■□□□□ 0.02
HMGN1-216ENST00000486741 AIFM3Q96NN9 605 aa15.2■□□□□ 0.02
HMGN1-216ENST00000486741 MAPK8IP2Q13387 824 aaPredicted RBP15.2■□□□□ 0.02
HMGN1-216ENST00000486741 ERFEQ4G0M1 354 aa15.2■□□□□ 0.02
HMGN1-216ENST00000486741 CLSTN2Q9H4D0 955 aa15.2■□□□□ 0.02
HMGN1-216ENST00000486741 UFL1O94874 794 aa15.2■□□□□ 0.02
HMGN1-216ENST00000486741 ZNF174Q15697 407 aa15.2■□□□□ 0.02
HMGN1-216ENST00000486741 BRAPQ7Z569 592 aa15.2■□□□□ 0.02
HMGN1-216ENST00000486741 TRIM75PA6NK02 468 aa15.2■□□□□ 0.02
HMGN1-216ENST00000486741 ZNF274Q96GC6 653 aaPredicted RBP15.19■□□□□ 0.02
HMGN1-216ENST00000486741 RIMS1Q86UR5 1692 aaKnown RBP15.19■□□□□ 0.02
HMGN1-216ENST00000486741 SKILP12757 684 aa15.19■□□□□ 0.02
HMGN1-216ENST00000486741 MCM7P33993 719 aa15.19■□□□□ 0.02
HMGN1-216ENST00000486741 EIF6P56537 245 aaKnown RBP15.19■□□□□ 0.02
HMGN1-216ENST00000486741 TANGO6Q9C0B7 1094 aa15.19■□□□□ 0.02
HMGN1-216ENST00000486741 CYP19A1P11511 503 aaPredicted RBP15.19■□□□□ 0.02
HMGN1-216ENST00000486741 UBA7P41226 1012 aa15.19■□□□□ 0.02
HMGN1-216ENST00000486741 UBASH3AP57075 661 aa15.19■□□□□ 0.02
HMGN1-216ENST00000486741 RASGRF1Q13972 1273 aa15.19■□□□□ 0.02
HMGN1-216ENST00000486741 A0A0G2JLW4 131 aa15.18■□□□□ 0.02
HMGN1-216ENST00000486741 STIM1Q13586 685 aa15.18■□□□□ 0.02
HMGN1-216ENST00000486741 TRMT1LQ7Z2T5 733 aaKnown RBP15.18■□□□□ 0.02
HMGN1-216ENST00000486741 ZC3H12CQ9C0D7 883 aaKnown RBP15.18■□□□□ 0.02
HMGN1-216ENST00000486741 IFNKQ9P0W0 207 aa15.18■□□□□ 0.02
HMGN1-216ENST00000486741 VPS54Q9P1Q0 977 aa15.18■□□□□ 0.02
HMGN1-216ENST00000486741 CYP2D7A0A087X1C5 515 aa15.18■□□□□ 0.02
HMGN1-216ENST00000486741 MYSM1Q5VVJ2 828 aa15.18■□□□□ 0.02
HMGN1-216ENST00000486741 ZNF804AQ7Z570 1209 aa15.18■□□□□ 0.02
HMGN1-216ENST00000486741 ISCA1Q9BUE6 129 aa15.18■□□□□ 0.02
HMGN1-216ENST00000486741 ANKRD2Q9GZV1 360 aa15.18■□□□□ 0.02
HMGN1-216ENST00000486741 STAMQ92783 540 aa15.18■□□□□ 0.02
HMGN1-216ENST00000486741 CCDC43Q96MW1 224 aaKnown RBP15.18■□□□□ 0.02
HMGN1-216ENST00000486741 CYP2E1P05181 493 aaPredicted RBP15.17■□□□□ 0.02
HMGN1-216ENST00000486741 ADD2P35612 726 aa15.17■□□□□ 0.02
HMGN1-216ENST00000486741 DYNLL1P63167 89 aaKnown RBP15.17■□□□□ 0.02
HMGN1-216ENST00000486741 DNAJC5Q9H3Z4 198 aa15.17■□□□□ 0.02
HMGN1-216ENST00000486741 RABL6Q3YEC7 729 aaPredicted RBP15.17■□□□□ 0.02
HMGN1-216ENST00000486741 MAPKAPK5Q8IW41 473 aa15.17■□□□□ 0.02
HMGN1-216ENST00000486741 CLIC4Q9Y696 253 aa15.17■□□□□ 0.02
HMGN1-216ENST00000486741 ZNF202O95125 648 aa15.17■□□□□ 0.02
HMGN1-216ENST00000486741 IDEP14735 1019 aa15.17■□□□□ 0.02
HMGN1-216ENST00000486741 EPS15P42566 896 aa15.17■□□□□ 0.02
HMGN1-216ENST00000486741 PPARAQ07869 468 aa15.17■□□□□ 0.02
HMGN1-216ENST00000486741 VWA3AA6NCI4 1184 aa15.17■□□□□ 0.02
HMGN1-216ENST00000486741 LCORLQ8N3X6 602 aa15.17■□□□□ 0.02
HMGN1-216ENST00000486741 BTBD18B2RXH4 712 aa15.16■□□□□ 0.02
HMGN1-216ENST00000486741 STOX1Q6ZVD7 989 aa15.16■□□□□ 0.02
HMGN1-216ENST00000486741 FBXO3Q9UK99 471 aa15.16■□□□□ 0.02
HMGN1-216ENST00000486741 MEGF6O75095 1541 aa15.16■□□□□ 0.02
HMGN1-216ENST00000486741 OFD1O75665 1012 aa15.16■□□□□ 0.02
HMGN1-216ENST00000486741 UBE3CQ15386 1083 aa15.16■□□□□ 0.02
HMGN1-216ENST00000486741 KRI1Q8N9T8 703 aaKnown RBP15.16■□□□□ 0.02
HMGN1-216ENST00000486741 CLIC6Q96NY7 704 aa15.16■□□□□ 0.02
HMGN1-216ENST00000486741 CAVIN2O95810 425 aa15.15■□□□□ 0.02
HMGN1-216ENST00000486741 RFX5P48382 616 aaPredicted RBP15.15■□□□□ 0.02
HMGN1-216ENST00000486741 UIMC1Q96RL1 719 aa15.15■□□□□ 0.02
HMGN1-216ENST00000486741 PCDHA7Q9UN72 937 aa15.15■□□□□ 0.02
HMGN1-216ENST00000486741 POLR2DO15514 142 aaKnown RBP15.15■□□□□ 0.02
HMGN1-216ENST00000486741 EIF5P55010 431 aaKnown RBP15.15■□□□□ 0.02
HMGN1-216ENST00000486741 TEX11Q8IYF3 940 aa15.15■□□□□ 0.02
HMGN1-216ENST00000486741 ZNF654Q8IZM8 581 aa15.15■□□□□ 0.02
HMGN1-216ENST00000486741 TGFBRAP1Q8WUH2 860 aa15.15■□□□□ 0.02
HMGN1-216ENST00000486741 URI1O94763 535 aaPredicted RBP15.15■□□□□ 0.02
HMGN1-216ENST00000486741 GSTO1P78417 241 aa15.15■□□□□ 0.02
HMGN1-216ENST00000486741 FBXO18Q8NFZ0 1043 aa15.15■□□□□ 0.02
HMGN1-216ENST00000486741 SALL3Q9BXA9 1300 aa15.15■□□□□ 0.02
HMGN1-216ENST00000486741 KRT2P35908 639 aa15.14■□□□□ 0.02
HMGN1-216ENST00000486741 SLF2Q8IX21 1173 aa15.14■□□□□ 0.02
HMGN1-216ENST00000486741 GPR101Q96P66 508 aaPredicted RBP15.14■□□□□ 0.02
HMGN1-216ENST00000486741 PRDM10Q9NQV6 1147 aa15.14■□□□□ 0.02
HMGN1-216ENST00000486741 KCNH3Q9ULD8 1083 aa15.14■□□□□ 0.02
HMGN1-216ENST00000486741 ZNF76P36508 570 aa15.14■□□□□ 0.01
HMGN1-216ENST00000486741 NAPAP54920 295 aa15.14■□□□□ 0.01
HMGN1-216ENST00000486741 APOA5Q6Q788 366 aa15.14■□□□□ 0.01
HMGN1-216ENST00000486741 PIK3AP1Q6ZUJ8 805 aa15.14■□□□□ 0.01
HMGN1-216ENST00000486741 NOL12Q9UGY1 213 aaKnown RBP eCLIP15.14■□□□□ 0.01
HMGN1-216ENST00000486741 V9GYY5 206 aaPredicted RBP15.14■□□□□ 0.01
HMGN1-216ENST00000486741 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms