RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 ZNF296Q8WUU4 475 aaPredicted RBP17.48■□□□□ 0.39
UPF3A-204ENST00000475218 PTPN18Q99952 460 aa17.48■□□□□ 0.39
UPF3A-204ENST00000475218 RFX7Q2KHR2 1363 aa17.47■□□□□ 0.39
UPF3A-204ENST00000475218 MANSC4A6NHS7 340 aaPredicted RBP17.47■□□□□ 0.39
UPF3A-204ENST00000475218 PI16Q6UXB8 463 aa17.47■□□□□ 0.39
UPF3A-204ENST00000475218 MS4A4AQ96JQ5 239 aa17.47■□□□□ 0.39
UPF3A-204ENST00000475218 FAM198AQ9UFP1 575 aa17.47■□□□□ 0.39
UPF3A-204ENST00000475218 GAKO14976 1311 aa17.47■□□□□ 0.39
UPF3A-204ENST00000475218 TNRC18O15417 2968 aaPredicted RBP17.46■□□□□ 0.39
UPF3A-204ENST00000475218 TESPA1A2RU30 521 aaPredicted RBP17.46■□□□□ 0.39
UPF3A-204ENST00000475218 GPR25O00155 361 aa17.46■□□□□ 0.39
UPF3A-204ENST00000475218 ATP8B2P98198 1209 aa17.46■□□□□ 0.39
UPF3A-204ENST00000475218 NOM1Q5C9Z4 860 aaKnown RBP17.46■□□□□ 0.39
UPF3A-204ENST00000475218 ZFPM1Q8IX07 1006 aa17.46■□□□□ 0.39
UPF3A-204ENST00000475218 OPTNQ96CV9 577 aa17.46■□□□□ 0.39
UPF3A-204ENST00000475218 AKAP2Q9Y2D5 859 aa17.46■□□□□ 0.39
UPF3A-204ENST00000475218 HMG20BQ9P0W2 317 aa17.45■□□□□ 0.38
UPF3A-204ENST00000475218 SNCAIPQ9Y6H5 919 aa17.45■□□□□ 0.38
UPF3A-204ENST00000475218 CCDC85CA6NKD9 419 aa17.45■□□□□ 0.38
UPF3A-204ENST00000475218 MAP3K9P80192 1104 aa17.45■□□□□ 0.38
UPF3A-204ENST00000475218 MVPQ14764 893 aaKnown RBP17.45■□□□□ 0.38
UPF3A-204ENST00000475218 ITPRIPQ8IWB1 547 aa17.45■□□□□ 0.38
UPF3A-204ENST00000475218 FAM151AQ8WW52 585 aa17.45■□□□□ 0.38
UPF3A-204ENST00000475218 TMOD2Q9NZR1 351 aa17.45■□□□□ 0.38
UPF3A-204ENST00000475218 INHBEP58166 350 aa17.44■□□□□ 0.38
UPF3A-204ENST00000475218 TCP10Q12799 353 aa17.44■□□□□ 0.38
UPF3A-204ENST00000475218 CTU1Q7Z7A3 348 aaKnown RBP17.44■□□□□ 0.38
UPF3A-204ENST00000475218 PANK1Q8TE04 598 aa17.44■□□□□ 0.38
UPF3A-204ENST00000475218 ZKSCAN4Q969J2 545 aaPredicted RBP17.44■□□□□ 0.38
UPF3A-204ENST00000475218 NEUROD6Q96NK8 337 aa17.44■□□□□ 0.38
UPF3A-204ENST00000475218 ATRNL1Q5VV63 1379 aa17.44■□□□□ 0.38
UPF3A-204ENST00000475218 ARID4AP29374 1257 aaPredicted RBP17.43■□□□□ 0.38
UPF3A-204ENST00000475218 FTSJ3Q8IY81 847 aaKnown RBP17.43■□□□□ 0.38
UPF3A-204ENST00000475218 FAM163AQ96GL9 167 aaPredicted RBP17.43■□□□□ 0.38
UPF3A-204ENST00000475218 USP40Q9NVE5 1235 aa17.43■□□□□ 0.38
UPF3A-204ENST00000475218 MCAMP43121 646 aa17.43■□□□□ 0.38
UPF3A-204ENST00000475218 G3BP1Q13283 466 aaKnown RBP eCLIP17.43■□□□□ 0.38
UPF3A-204ENST00000475218 TBC1D9Q6ZT07 1266 aa17.43■□□□□ 0.38
UPF3A-204ENST00000475218 MIGA2Q7L4E1 593 aa17.43■□□□□ 0.38
UPF3A-204ENST00000475218 BRI3BPQ8WY22 251 aa17.43■□□□□ 0.38
UPF3A-204ENST00000475218 ABCF2Q9UG63 623 aa17.43■□□□□ 0.38
UPF3A-204ENST00000475218 CENPFP49454 3210 aa17.42■□□□□ 0.38
UPF3A-204ENST00000475218 SPDYE5A6NIY4 337 aa17.42■□□□□ 0.38
UPF3A-204ENST00000475218 CAP1Q01518 475 aa17.42■□□□□ 0.38
UPF3A-204ENST00000475218 MECOMQ03112 1051 aa17.42■□□□□ 0.38
UPF3A-204ENST00000475218 SH3BP5LQ7L8J4 393 aa17.42■□□□□ 0.38
UPF3A-204ENST00000475218 SPATA5Q8NB90 893 aa17.42■□□□□ 0.38
UPF3A-204ENST00000475218 WRNIP1Q96S55 665 aa17.42■□□□□ 0.38
UPF3A-204ENST00000475218 NOP58Q9Y2X3 529 aaKnown RBP17.42■□□□□ 0.38
UPF3A-204ENST00000475218 WDHD1O75717 1129 aaPredicted RBP17.41■□□□□ 0.38
UPF3A-204ENST00000475218 ALDH1A1P00352 501 aa17.41■□□□□ 0.38
UPF3A-204ENST00000475218 INPP5BP32019 993 aa17.41■□□□□ 0.38
UPF3A-204ENST00000475218 TNNI3KQ59H18 835 aa17.41■□□□□ 0.38
UPF3A-204ENST00000475218 CEP85Q6P2H3 762 aa17.41■□□□□ 0.38
UPF3A-204ENST00000475218 ZGPATQ8N5A5 531 aaKnown RBP17.41■□□□□ 0.38
UPF3A-204ENST00000475218 OTUD5Q96G74 571 aa17.41■□□□□ 0.38
UPF3A-204ENST00000475218 IDI2Q9BXS1 227 aa17.41■□□□□ 0.38
UPF3A-204ENST00000475218 GPR108Q9NPR9 543 aa17.41■□□□□ 0.38
UPF3A-204ENST00000475218 DDX4Q9NQI0 724 aaKnown RBP17.41■□□□□ 0.38
UPF3A-204ENST00000475218 ZNF112Q9UJU3 913 aa17.41■□□□□ 0.38
UPF3A-204ENST00000475218 FPGT-TNNI3KV9GXZ4 949 aa17.41■□□□□ 0.38
UPF3A-204ENST00000475218 DOCK2Q92608 1830 aa17.41■□□□□ 0.38
UPF3A-204ENST00000475218 SLURP2P0DP57 97 aa17.4■□□□□ 0.38
UPF3A-204ENST00000475218 RGS19P49795 217 aa17.4■□□□□ 0.38
UPF3A-204ENST00000475218 RHBDL3P58872 404 aa17.4■□□□□ 0.38
UPF3A-204ENST00000475218 CRHR2Q13324 411 aa17.4■□□□□ 0.38
UPF3A-204ENST00000475218 DZIP1Q86YF9 867 aaKnown RBP17.4■□□□□ 0.38
UPF3A-204ENST00000475218 DBNDD2Q9BQY9 259 aa17.4■□□□□ 0.38
UPF3A-204ENST00000475218 AK9Q5TCS8 1911 aa17.4■□□□□ 0.38
UPF3A-204ENST00000475218 MYO5AQ9Y4I1 1855 aaKnown RBP17.4■□□□□ 0.38
UPF3A-204ENST00000475218 MROH7-TTC4A0A0A0MT08 1334 aa17.4■□□□□ 0.38
UPF3A-204ENST00000475218 FKTNO75072 461 aa17.4■□□□□ 0.38
UPF3A-204ENST00000475218 SURF6O75683 361 aaKnown RBP17.4■□□□□ 0.38
UPF3A-204ENST00000475218 RGS3P49796 1198 aa17.4■□□□□ 0.38
UPF3A-204ENST00000475218 CSADQ9Y600 493 aa17.4■□□□□ 0.38
UPF3A-204ENST00000475218 BTDP43251 543 aa17.39■□□□□ 0.37
UPF3A-204ENST00000475218 NSUN4Q96CB9 384 aaKnown RBP17.39■□□□□ 0.37
UPF3A-204ENST00000475218 ZNF341Q9BYN7 854 aa17.39■□□□□ 0.37
UPF3A-204ENST00000475218 TLR7Q9NYK1 1049 aaKnown RBP17.39■□□□□ 0.37
UPF3A-204ENST00000475218 GPR75-ASB3A0A0A6YYF3 556 aa17.38■□□□□ 0.37
UPF3A-204ENST00000475218 IRF6O14896 467 aa17.38■□□□□ 0.37
UPF3A-204ENST00000475218 DCAF15Q66K64 600 aa17.38■□□□□ 0.37
UPF3A-204ENST00000475218 FAM43AQ8N2R8 423 aa17.38■□□□□ 0.37
UPF3A-204ENST00000475218 DDTLA6NHG4 134 aaPredicted RBP17.38■□□□□ 0.37
UPF3A-204ENST00000475218 ENTPD3O75355 529 aa17.38■□□□□ 0.37
UPF3A-204ENST00000475218 GORABQ5T7V8 394 aa17.38■□□□□ 0.37
UPF3A-204ENST00000475218 SPTY2D1Q68D10 685 aaPredicted RBP17.38■□□□□ 0.37
UPF3A-204ENST00000475218 ERICH6Q7L0X2 663 aa17.38■□□□□ 0.37
UPF3A-204ENST00000475218 ERO1BQ86YB8 467 aa17.38■□□□□ 0.37
UPF3A-204ENST00000475218 HOOK2Q96ED9 719 aa17.38■□□□□ 0.37
UPF3A-204ENST00000475218 DBNLQ9UJU6 430 aaKnown RBP17.38■□□□□ 0.37
UPF3A-204ENST00000475218 HPS5Q9UPZ3 1129 aa17.38■□□□□ 0.37
UPF3A-204ENST00000475218 CCL15-CCL14A0A0B4J2E2 113 aa17.37■□□□□ 0.37
UPF3A-204ENST00000475218 PHF20L1A8MW92 1017 aa17.37■□□□□ 0.37
UPF3A-204ENST00000475218 GTF2A2P52657 109 aa17.37■□□□□ 0.37
UPF3A-204ENST00000475218 CCL15Q16663 113 aa17.37■□□□□ 0.37
UPF3A-204ENST00000475218 EAF2Q96CJ1 260 aaPredicted RBP17.37■□□□□ 0.37
UPF3A-204ENST00000475218 SNRKQ9NRH2 765 aa17.37■□□□□ 0.37
UPF3A-204ENST00000475218 MAST2Q6P0Q8 1798 aa17.36■□□□□ 0.37
UPF3A-204ENST00000475218 UQCRFS1P1P0C7P4 283 aa17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms