RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 NOM1Q5C9Z4 860 aaKnown RBP25.69■■□□□ 1.7
SDC1-205ENST00000447124 OPTNQ96CV9 577 aa25.69■■□□□ 1.7
SDC1-205ENST00000447124 NEUROD6Q96NK8 337 aa25.69■■□□□ 1.7
SDC1-205ENST00000447124 TESPA1A2RU30 521 aaPredicted RBP25.68■■□□□ 1.7
SDC1-205ENST00000447124 NFIAQ12857 509 aa25.68■■□□□ 1.7
SDC1-205ENST00000447124 VGLL4Q14135 290 aa25.68■■□□□ 1.7
SDC1-205ENST00000447124 MS4A4AQ96JQ5 239 aa25.68■■□□□ 1.7
SDC1-205ENST00000447124 C1orf115Q9H7X2 142 aa25.68■■□□□ 1.7
SDC1-205ENST00000447124 USP40Q9NVE5 1235 aa25.68■■□□□ 1.7
SDC1-205ENST00000447124 ALDH1A1P00352 501 aa25.67■■□□□ 1.7
SDC1-205ENST00000447124 FAM151AQ8WW52 585 aa25.67■■□□□ 1.7
SDC1-205ENST00000447124 MYH13Q9UKX3 1938 aa25.67■■□□□ 1.7
SDC1-205ENST00000447124 TCP10Q12799 353 aa25.66■■□□□ 1.7
SDC1-205ENST00000447124 MVPQ14764 893 aaKnown RBP25.66■■□□□ 1.7
SDC1-205ENST00000447124 MIGA2Q7L4E1 593 aa25.66■■□□□ 1.7
SDC1-205ENST00000447124 ZFPM1Q8IX07 1006 aa25.66■■□□□ 1.7
SDC1-205ENST00000447124 SSH3Q8TE77 659 aa25.66■■□□□ 1.7
SDC1-205ENST00000447124 FAM198AQ9UFP1 575 aa25.66■■□□□ 1.7
SDC1-205ENST00000447124 PDS5AQ29RF7 1337 aaKnown RBP25.65■■□□□ 1.7
SDC1-205ENST00000447124 ZKSCAN4Q969J2 545 aaPredicted RBP25.65■■□□□ 1.7
SDC1-205ENST00000447124 HMG20BQ9P0W2 317 aa25.65■■□□□ 1.7
SDC1-205ENST00000447124 ABCF2Q9UG63 623 aa25.65■■□□□ 1.7
SDC1-205ENST00000447124 FKTNO75072 461 aa25.64■■□□□ 1.7
SDC1-205ENST00000447124 RGS19P49795 217 aa25.64■■□□□ 1.7
SDC1-205ENST00000447124 FTSJ3Q8IY81 847 aaKnown RBP25.64■■□□□ 1.7
SDC1-205ENST00000447124 ZGPATQ8N5A5 531 aaKnown RBP25.64■■□□□ 1.7
SDC1-205ENST00000447124 FAM163AQ96GL9 167 aaPredicted RBP25.64■■□□□ 1.7
SDC1-205ENST00000447124 SNCAIPQ9Y6H5 919 aa25.64■■□□□ 1.7
SDC1-205ENST00000447124 GAKO14976 1311 aa25.63■■□□□ 1.69
SDC1-205ENST00000447124 PI16Q6UXB8 463 aa25.63■■□□□ 1.69
SDC1-205ENST00000447124 ITPRIPQ8IWB1 547 aa25.63■■□□□ 1.69
SDC1-205ENST00000447124 ZNF384Q8TF68 577 aa25.63■■□□□ 1.69
SDC1-205ENST00000447124 BRI3BPQ8WY22 251 aa25.63■■□□□ 1.69
SDC1-205ENST00000447124 WRNIP1Q96S55 665 aa25.63■■□□□ 1.69
SDC1-205ENST00000447124 CSADQ9Y600 493 aa25.63■■□□□ 1.69
SDC1-205ENST00000447124 OTOFQ9HC10 1997 aa25.63■■□□□ 1.69
SDC1-205ENST00000447124 RPAP1Q9BWH6 1393 aaPredicted RBP25.62■■□□□ 1.69
SDC1-205ENST00000447124 TBC1D9Q6ZT07 1266 aa25.62■■□□□ 1.69
SDC1-205ENST00000447124 SPDYE5A6NIY4 337 aa25.61■■□□□ 1.69
SDC1-205ENST00000447124 PANK1Q8TE04 598 aa25.61■■□□□ 1.69
SDC1-205ENST00000447124 HOOK2Q96ED9 719 aa25.61■■□□□ 1.69
SDC1-205ENST00000447124 OTUD5Q96G74 571 aa25.61■■□□□ 1.69
SDC1-205ENST00000447124 ZNF341Q9BYN7 854 aa25.61■■□□□ 1.69
SDC1-205ENST00000447124 SURF6O75683 361 aaKnown RBP25.6■■□□□ 1.69
SDC1-205ENST00000447124 ARID4AP29374 1257 aaPredicted RBP25.6■■□□□ 1.69
SDC1-205ENST00000447124 INPP5BP32019 993 aa25.6■■□□□ 1.69
SDC1-205ENST00000447124 CRHR2Q13324 411 aa25.6■■□□□ 1.69
SDC1-205ENST00000447124 GORABQ5T7V8 394 aa25.6■■□□□ 1.69
SDC1-205ENST00000447124 DCAF15Q66K64 600 aa25.6■■□□□ 1.69
SDC1-205ENST00000447124 SPTY2D1Q68D10 685 aaPredicted RBP25.6■■□□□ 1.69
SDC1-205ENST00000447124 OTUD7BQ6GQQ9 843 aa25.6■■□□□ 1.69
SDC1-205ENST00000447124 ERICH6Q7L0X2 663 aa25.6■■□□□ 1.69
SDC1-205ENST00000447124 DZIP1Q86YF9 867 aaKnown RBP25.6■■□□□ 1.69
SDC1-205ENST00000447124 SPATA5Q8NB90 893 aa25.6■■□□□ 1.69
SDC1-205ENST00000447124 IDI2Q9BXS1 227 aa25.6■■□□□ 1.69
SDC1-205ENST00000447124 ZNF112Q9UJU3 913 aa25.6■■□□□ 1.69
SDC1-205ENST00000447124 NOP58Q9Y2X3 529 aaKnown RBP25.6■■□□□ 1.69
SDC1-205ENST00000447124 MECOMQ03112 1051 aa25.59■■□□□ 1.69
SDC1-205ENST00000447124 GPR108Q9NPR9 543 aa25.59■■□□□ 1.69
SDC1-205ENST00000447124 CCL15-CCL14A0A0B4J2E2 113 aa25.58■■□□□ 1.69
SDC1-205ENST00000447124 MCAMP43121 646 aa25.58■■□□□ 1.69
SDC1-205ENST00000447124 RGS3P49796 1198 aa25.58■■□□□ 1.69
SDC1-205ENST00000447124 GTF2A2P52657 109 aa25.58■■□□□ 1.69
SDC1-205ENST00000447124 PKN2Q16513 984 aaKnown RBP25.58■■□□□ 1.69
SDC1-205ENST00000447124 CCL15Q16663 113 aa25.58■■□□□ 1.69
SDC1-205ENST00000447124 TNNI3KQ59H18 835 aa25.58■■□□□ 1.69
SDC1-205ENST00000447124 SH3BP5LQ7L8J4 393 aa25.58■■□□□ 1.69
SDC1-205ENST00000447124 ERO1BQ86YB8 467 aa25.58■■□□□ 1.69
SDC1-205ENST00000447124 DBNDD2Q9BQY9 259 aa25.58■■□□□ 1.69
SDC1-205ENST00000447124 HPS5Q9UPZ3 1129 aa25.58■■□□□ 1.69
SDC1-205ENST00000447124 FPGT-TNNI3KV9GXZ4 949 aa25.58■■□□□ 1.69
SDC1-205ENST00000447124 MYH2Q9UKX2 1941 aa25.57■■□□□ 1.68
SDC1-205ENST00000447124 GPR75-ASB3A0A0A6YYF3 556 aa25.57■■□□□ 1.68
SDC1-205ENST00000447124 IRF6O14896 467 aa25.57■■□□□ 1.68
SDC1-205ENST00000447124 WDHD1O75717 1129 aaPredicted RBP25.57■■□□□ 1.68
SDC1-205ENST00000447124 BTDP43251 543 aa25.57■■□□□ 1.68
SDC1-205ENST00000447124 FAM43AQ8N2R8 423 aa25.57■■□□□ 1.68
SDC1-205ENST00000447124 DDX4Q9NQI0 724 aaKnown RBP25.57■■□□□ 1.68
SDC1-205ENST00000447124 LAMB1P07942 1786 aa25.56■■□□□ 1.68
SDC1-205ENST00000447124 ENTPD3O75355 529 aa25.56■■□□□ 1.68
SDC1-205ENST00000447124 RHBDL3P58872 404 aa25.56■■□□□ 1.68
SDC1-205ENST00000447124 SLF2Q8IX21 1173 aa25.56■■□□□ 1.68
SDC1-205ENST00000447124 NSUN4Q96CB9 384 aaKnown RBP25.56■■□□□ 1.68
SDC1-205ENST00000447124 UQCRFS1P1P0C7P4 283 aa25.55■■□□□ 1.68
SDC1-205ENST00000447124 SLURP2P0DP57 97 aa25.55■■□□□ 1.68
SDC1-205ENST00000447124 CAP1Q01518 475 aa25.55■■□□□ 1.68
SDC1-205ENST00000447124 OS9Q13438 667 aaPredicted RBP25.55■■□□□ 1.68
SDC1-205ENST00000447124 CEP85Q6P2H3 762 aa25.55■■□□□ 1.68
SDC1-205ENST00000447124 MROH7-TTC4A0A0A0MT08 1334 aa25.55■■□□□ 1.68
SDC1-205ENST00000447124 RFX7Q2KHR2 1363 aa25.55■■□□□ 1.68
SDC1-205ENST00000447124 DDTLA6NHG4 134 aaPredicted RBP25.54■■□□□ 1.68
SDC1-205ENST00000447124 PPIL2Q13356 520 aa25.54■■□□□ 1.68
SDC1-205ENST00000447124 SNRKQ9NRH2 765 aa25.54■■□□□ 1.68
SDC1-205ENST00000447124 ATRNL1Q5VV63 1379 aa25.54■■□□□ 1.68
SDC1-205ENST00000447124 PHF20L1A8MW92 1017 aa25.53■■□□□ 1.68
SDC1-205ENST00000447124 PPATQ06203 517 aa25.53■■□□□ 1.68
SDC1-205ENST00000447124 FBXO46Q6PJ61 603 aaPredicted RBP25.53■■□□□ 1.68
SDC1-205ENST00000447124 AK9Q5TCS8 1911 aa25.53■■□□□ 1.68
SDC1-205ENST00000447124 CETPP11597 493 aa25.52■■□□□ 1.68
SDC1-205ENST00000447124 SOX10P56693 466 aa25.52■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms