RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 TEPSINQ96N21 525 aa18.63■□□□□ 0.57
LIMS3-201ENST00000437679 DBNLQ9UJU6 430 aaKnown RBP18.63■□□□□ 0.57
LIMS3-201ENST00000437679 FZD1Q9UP38 647 aa18.63■□□□□ 0.57
LIMS3-201ENST00000437679 CA12O43570 354 aa18.62■□□□□ 0.57
LIMS3-201ENST00000437679 AACSQ86V21 672 aa18.62■□□□□ 0.57
LIMS3-201ENST00000437679 REM2Q8IYK8 340 aaPredicted RBP18.62■□□□□ 0.57
LIMS3-201ENST00000437679 KIF1BPQ96EK5 621 aa18.62■□□□□ 0.57
LIMS3-201ENST00000437679 ZNF512BQ96KM6 892 aaPredicted RBP18.62■□□□□ 0.57
LIMS3-201ENST00000437679 USP40Q9NVE5 1235 aa18.62■□□□□ 0.57
LIMS3-201ENST00000437679 RAI14Q9P0K7 980 aa18.62■□□□□ 0.57
LIMS3-201ENST00000437679 GAKO14976 1311 aa18.62■□□□□ 0.57
LIMS3-201ENST00000437679 UNCXA6NJT0 531 aa18.61■□□□□ 0.57
LIMS3-201ENST00000437679 APBB1O00213 710 aa18.61■□□□□ 0.57
LIMS3-201ENST00000437679 RAB11FIP3O75154 756 aa18.61■□□□□ 0.57
LIMS3-201ENST00000437679 RRP1P56182 461 aaKnown RBP18.61■□□□□ 0.57
LIMS3-201ENST00000437679 GSTO1P78417 241 aa18.61■□□□□ 0.57
LIMS3-201ENST00000437679 MECOMQ03112 1051 aa18.61■□□□□ 0.57
LIMS3-201ENST00000437679 TBC1D9Q6ZT07 1266 aa18.61■□□□□ 0.57
LIMS3-201ENST00000437679 HOOK2Q96ED9 719 aa18.61■□□□□ 0.57
LIMS3-201ENST00000437679 SLC10A4Q96EP9 437 aa18.61■□□□□ 0.57
LIMS3-201ENST00000437679 FAM163AQ96GL9 167 aaPredicted RBP18.61■□□□□ 0.57
LIMS3-201ENST00000437679 IL1RAPL2Q9NP60 686 aa18.61■□□□□ 0.57
LIMS3-201ENST00000437679 SNRKQ9NRH2 765 aa18.61■□□□□ 0.57
LIMS3-201ENST00000437679 TLR7Q9NYK1 1049 aaKnown RBP18.61■□□□□ 0.57
LIMS3-201ENST00000437679 LRP2BPQ9P2M1 347 aa18.61■□□□□ 0.57
LIMS3-201ENST00000437679 MROH7-TTC4A0A0A0MT08 1334 aa18.6■□□□□ 0.57
LIMS3-201ENST00000437679 USP2O75604 605 aaPredicted RBP18.6■□□□□ 0.57
LIMS3-201ENST00000437679 LDHCP07864 332 aa18.6■□□□□ 0.57
LIMS3-201ENST00000437679 HSPA8P11142 646 aaKnown RBP18.6■□□□□ 0.57
LIMS3-201ENST00000437679 LBX1P52954 281 aa18.6■□□□□ 0.57
LIMS3-201ENST00000437679 CDAN1Q8IWY9 1227 aa18.6■□□□□ 0.57
LIMS3-201ENST00000437679 CLASRPQ8N2M8 674 aaKnown RBP18.6■□□□□ 0.57
LIMS3-201ENST00000437679 PRDM10Q9NQV6 1147 aa18.6■□□□□ 0.57
LIMS3-201ENST00000437679 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.6■□□□□ 0.57
LIMS3-201ENST00000437679 RPAP1Q9BWH6 1393 aaPredicted RBP18.59■□□□□ 0.57
LIMS3-201ENST00000437679 AKAP11Q9UKA4 1901 aa18.59■□□□□ 0.57
LIMS3-201ENST00000437679 COL13A1Q5TAT6 717 aaPredicted RBP18.59■□□□□ 0.57
LIMS3-201ENST00000437679 ANKRD13AQ8IZ07 590 aa18.59■□□□□ 0.57
LIMS3-201ENST00000437679 FAM151AQ8WW52 585 aa18.59■□□□□ 0.57
LIMS3-201ENST00000437679 NSUN4Q96CB9 384 aaKnown RBP18.59■□□□□ 0.57
LIMS3-201ENST00000437679 AK9Q5TCS8 1911 aa18.59■□□□□ 0.57
LIMS3-201ENST00000437679 BTDP43251 543 aa18.58■□□□□ 0.56
LIMS3-201ENST00000437679 TCP10Q12799 353 aa18.58■□□□□ 0.56
LIMS3-201ENST00000437679 NFIAQ12857 509 aa18.58■□□□□ 0.56
LIMS3-201ENST00000437679 MKRN3Q13064 507 aaKnown RBP18.58■□□□□ 0.56
LIMS3-201ENST00000437679 CLMNQ96JQ2 1002 aa18.58■□□□□ 0.56
LIMS3-201ENST00000437679 CSRNP1Q96S65 589 aa18.58■□□□□ 0.56
LIMS3-201ENST00000437679 GPR75-ASB3A0A0A6YYF3 556 aa18.57■□□□□ 0.56
LIMS3-201ENST00000437679 IFIT2P09913 472 aaKnown RBP18.57■□□□□ 0.56
LIMS3-201ENST00000437679 ZAP70P43403 619 aa18.57■□□□□ 0.56
LIMS3-201ENST00000437679 SPRYD7Q5W111 196 aa18.57■□□□□ 0.56
LIMS3-201ENST00000437679 DCAF15Q66K64 600 aa18.57■□□□□ 0.56
LIMS3-201ENST00000437679 BCL11AQ9H165 835 aa18.57■□□□□ 0.56
LIMS3-201ENST00000437679 TSKSQ9UJT2 592 aa18.57■□□□□ 0.56
LIMS3-201ENST00000437679 IGSF3O75054 1194 aa18.56■□□□□ 0.56
LIMS3-201ENST00000437679 CYP2E1P05181 493 aaPredicted RBP18.56■□□□□ 0.56
LIMS3-201ENST00000437679 ZNF384Q8TF68 577 aa18.56■□□□□ 0.56
LIMS3-201ENST00000437679 NOL10Q9BSC4 688 aaKnown RBP18.56■□□□□ 0.56
LIMS3-201ENST00000437679 IDI2Q9BXS1 227 aa18.56■□□□□ 0.56
LIMS3-201ENST00000437679 FAM198AQ9UFP1 575 aa18.56■□□□□ 0.56
LIMS3-201ENST00000437679 ENTPD3O75355 529 aa18.55■□□□□ 0.56
LIMS3-201ENST00000437679 ZBTB48P10074 688 aaPredicted RBP18.55■□□□□ 0.56
LIMS3-201ENST00000437679 RGS3P49796 1198 aa18.55■□□□□ 0.56
LIMS3-201ENST00000437679 MAP3K9P80192 1104 aa18.55■□□□□ 0.56
LIMS3-201ENST00000437679 SREBF2Q12772 1141 aa18.55■□□□□ 0.56
LIMS3-201ENST00000437679 NAA16Q6N069 864 aaPredicted RBP18.55■□□□□ 0.56
LIMS3-201ENST00000437679 WNK4Q96J92 1243 aa18.55■□□□□ 0.56
LIMS3-201ENST00000437679 SAGE1Q9NXZ1 904 aa18.55■□□□□ 0.56
LIMS3-201ENST00000437679 CSADQ9Y600 493 aa18.55■□□□□ 0.56
LIMS3-201ENST00000437679 MAP4K4O95819 1239 aaPredicted RBP18.54■□□□□ 0.56
LIMS3-201ENST00000437679 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.54■□□□□ 0.56
LIMS3-201ENST00000437679 ZNF341Q9BYN7 854 aa18.54■□□□□ 0.56
LIMS3-201ENST00000437679 LRRCC1Q9C099 1032 aa18.54■□□□□ 0.56
LIMS3-201ENST00000437679 ELP3Q9H9T3 547 aa18.54■□□□□ 0.56
LIMS3-201ENST00000437679 RNF186Q9NXI6 227 aa18.54■□□□□ 0.56
LIMS3-201ENST00000437679 OTOFQ9HC10 1997 aa18.53■□□□□ 0.56
LIMS3-201ENST00000437679 MAST2Q6P0Q8 1798 aa18.53■□□□□ 0.56
LIMS3-201ENST00000437679 WDHD1O75717 1129 aaPredicted RBP18.53■□□□□ 0.56
LIMS3-201ENST00000437679 TRPA1O75762 1119 aa18.53■□□□□ 0.56
LIMS3-201ENST00000437679 BAG3O95817 575 aa18.53■□□□□ 0.56
LIMS3-201ENST00000437679 TM4SF4P48230 202 aa18.53■□□□□ 0.56
LIMS3-201ENST00000437679 RHBDL3P58872 404 aa18.53■□□□□ 0.56
LIMS3-201ENST00000437679 PICALMQ13492 652 aa18.53■□□□□ 0.56
LIMS3-201ENST00000437679 PPP1R3FQ6ZSY5 799 aaPredicted RBP18.53■□□□□ 0.56
LIMS3-201ENST00000437679 MIGA2Q7L4E1 593 aa18.53■□□□□ 0.56
LIMS3-201ENST00000437679 ZSCAN29Q8IWY8 852 aaPredicted RBP18.53■□□□□ 0.56
LIMS3-201ENST00000437679 TNS4Q8IZW8 715 aa18.53■□□□□ 0.56
LIMS3-201ENST00000437679 WRNIP1Q96S55 665 aa18.53■□□□□ 0.56
LIMS3-201ENST00000437679 PIH1D3Q9NQM4 214 aaKnown RBP18.53■□□□□ 0.56
LIMS3-201ENST00000437679 MYO5AQ9Y4I1 1855 aaKnown RBP18.52■□□□□ 0.56
LIMS3-201ENST00000437679 MANSC4A6NHS7 340 aaPredicted RBP18.52■□□□□ 0.56
LIMS3-201ENST00000437679 IDH1O75874 414 aaKnown RBP18.52■□□□□ 0.56
LIMS3-201ENST00000437679 VGLL4Q14135 290 aa18.52■□□□□ 0.56
LIMS3-201ENST00000437679 ZFPM1Q8IX07 1006 aa18.52■□□□□ 0.56
LIMS3-201ENST00000437679 CRBNQ96SW2 442 aa18.52■□□□□ 0.56
LIMS3-201ENST00000437679 RFX7Q2KHR2 1363 aa18.52■□□□□ 0.55
LIMS3-201ENST00000437679 PLCG2P16885 1265 aa18.51■□□□□ 0.55
LIMS3-201ENST00000437679 INHBEP58166 350 aa18.51■□□□□ 0.55
LIMS3-201ENST00000437679 MAP3K12Q12852 859 aa18.51■□□□□ 0.55
LIMS3-201ENST00000437679 TEX11Q8IYF3 940 aa18.51■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms