RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 TAF5LO75529 589 aa7.44□□□□□ -1.22
SMC1A-202ENST00000375340 IDEP14735 1019 aa7.44□□□□□ -1.22
SMC1A-202ENST00000375340 CAPN2P17655 700 aa7.44□□□□□ -1.22
SMC1A-202ENST00000375340 HLTFQ14527 1009 aaKnown RBP eCLIP7.44□□□□□ -1.22
SMC1A-202ENST00000375340 TMEM266Q2M3C6 531 aa7.44□□□□□ -1.22
SMC1A-202ENST00000375340 IGSF22Q8N9C0 903 aa7.44□□□□□ -1.22
SMC1A-202ENST00000375340 PLBD2Q8NHP8 589 aa7.44□□□□□ -1.22
SMC1A-202ENST00000375340 CALML4Q96GE6 196 aa7.44□□□□□ -1.22
SMC1A-202ENST00000375340 RMND1Q9NWS8 449 aa7.44□□□□□ -1.22
SMC1A-202ENST00000375340 TSPY3P0CV98 308 aa7.44□□□□□ -1.22
SMC1A-202ENST00000375340 TSPY8P0CW00 308 aa7.44□□□□□ -1.22
SMC1A-202ENST00000375340 PFKFB1P16118 471 aa7.44□□□□□ -1.22
SMC1A-202ENST00000375340 ZAP70P43403 619 aa7.44□□□□□ -1.22
SMC1A-202ENST00000375340 SIRT1Q96EB6 747 aa7.44□□□□□ -1.22
SMC1A-202ENST00000375340 FEZ1Q99689 392 aa7.44□□□□□ -1.22
SMC1A-202ENST00000375340 ARHGEF28Q8N1W1 1705 aaKnown RBP7.44□□□□□ -1.22
SMC1A-202ENST00000375340 LTKP29376 864 aa7.44□□□□□ -1.22
SMC1A-202ENST00000375340 ATP6V1AP38606 617 aa7.44□□□□□ -1.22
SMC1A-202ENST00000375340 ASIC1P78348 528 aa7.44□□□□□ -1.22
SMC1A-202ENST00000375340 IFFO1Q0D2I5 559 aa7.44□□□□□ -1.22
SMC1A-202ENST00000375340 SLFNL1Q499Z3 407 aa7.44□□□□□ -1.22
SMC1A-202ENST00000375340 CCDC152Q4G0S7 254 aa7.44□□□□□ -1.22
SMC1A-202ENST00000375340 FAM114A1Q8IWE2 563 aa7.44□□□□□ -1.22
SMC1A-202ENST00000375340 UIMC1Q96RL1 719 aa7.44□□□□□ -1.22
SMC1A-202ENST00000375340 RPAP1Q9BWH6 1393 aaPredicted RBP7.44□□□□□ -1.22
SMC1A-202ENST00000375340 NEO1Q92859 1461 aa7.44□□□□□ -1.22
SMC1A-202ENST00000375340 KIF5BP33176 963 aa7.44□□□□□ -1.22
SMC1A-202ENST00000375340 CLIC6Q96NY7 704 aa7.44□□□□□ -1.22
SMC1A-202ENST00000375340 USP28Q96RU2 1077 aa7.44□□□□□ -1.22
SMC1A-202ENST00000375340 ORAI2Q96SN7 254 aa7.44□□□□□ -1.22
SMC1A-202ENST00000375340 USP6P35125 1406 aa7.44□□□□□ -1.22
SMC1A-202ENST00000375340 SEC31AO94979 1220 aaKnown RBP7.44□□□□□ -1.22
SMC1A-202ENST00000375340 VPS16Q9H269 839 aa7.44□□□□□ -1.22
SMC1A-202ENST00000375340 PDE4BQ07343 736 aa7.43□□□□□ -1.22
SMC1A-202ENST00000375340 PRPF4BQ13523 1007 aaKnown RBP7.43□□□□□ -1.22
SMC1A-202ENST00000375340 NRKQ7Z2Y5 1582 aa7.43□□□□□ -1.22
SMC1A-202ENST00000375340 PRR36Q9H6K5 1346 aa7.43□□□□□ -1.22
SMC1A-202ENST00000375340 TRIM75PA6NK02 468 aa7.43□□□□□ -1.22
SMC1A-202ENST00000375340 OAS2P29728 719 aaKnown RBP7.43□□□□□ -1.22
SMC1A-202ENST00000375340 ESR2Q92731 530 aa7.43□□□□□ -1.22
SMC1A-202ENST00000375340 SAP30BPQ9UHR5 308 aaKnown RBP7.43□□□□□ -1.22
SMC1A-202ENST00000375340 TRMT1LQ7Z2T5 733 aaKnown RBP7.43□□□□□ -1.22
SMC1A-202ENST00000375340 PPP1R13BQ96KQ4 1090 aa7.43□□□□□ -1.22
SMC1A-202ENST00000375340 STAP2Q9UGK3 403 aa7.43□□□□□ -1.22
SMC1A-202ENST00000375340 C10orf67Q8IYJ2 551 aa7.43□□□□□ -1.22
SMC1A-202ENST00000375340 PI4K2BQ8TCG2 481 aa7.43□□□□□ -1.22
SMC1A-202ENST00000375340 BBXQ8WY36 941 aaPredicted RBP7.43□□□□□ -1.22
SMC1A-202ENST00000375340 ERCC3P19447 782 aa7.43□□□□□ -1.22
SMC1A-202ENST00000375340 PIK3AP1Q6ZUJ8 805 aa7.43□□□□□ -1.22
SMC1A-202ENST00000375340 CRNKL1Q9BZJ0 848 aaKnown RBP7.43□□□□□ -1.22
SMC1A-202ENST00000375340 VGLL3A8MV65 326 aa7.43□□□□□ -1.22
SMC1A-202ENST00000375340 TMCO5BA8MYB1 307 aa7.43□□□□□ -1.22
SMC1A-202ENST00000375340 A1BGP04217 495 aa7.43□□□□□ -1.22
SMC1A-202ENST00000375340 ARID5BQ14865 1188 aa7.43□□□□□ -1.22
SMC1A-202ENST00000375340 LRRC24Q50LG9 513 aa7.43□□□□□ -1.22
SMC1A-202ENST00000375340 TCP11L1Q9NUJ3 509 aa7.43□□□□□ -1.22
SMC1A-202ENST00000375340 PCDHA7Q9UN72 937 aa7.43□□□□□ -1.22
SMC1A-202ENST00000375340 PCDH11XQ9BZA7 1347 aa7.43□□□□□ -1.22
SMC1A-202ENST00000375340 PCDH11YQ9BZA8 1340 aa7.43□□□□□ -1.22
SMC1A-202ENST00000375340 PIK3C2BO00750 1634 aa7.43□□□□□ -1.22
SMC1A-202ENST00000375340 ABCA9Q8IUA7 1624 aa7.43□□□□□ -1.22
SMC1A-202ENST00000375340 UBA7P41226 1012 aa7.43□□□□□ -1.22
SMC1A-202ENST00000375340 TMEM2Q9UHN6 1383 aa7.43□□□□□ -1.22
SMC1A-202ENST00000375340 NOP2P46087 812 aaKnown RBP7.43□□□□□ -1.22
SMC1A-202ENST00000375340 DCAF5Q96JK2 942 aa7.43□□□□□ -1.22
SMC1A-202ENST00000375340 PLEKHA4Q9H4M7 779 aa7.43□□□□□ -1.22
SMC1A-202ENST00000375340 NLRP1Q9C000 1473 aa7.42□□□□□ -1.22
SMC1A-202ENST00000375340 EYA2O00167 538 aa7.42□□□□□ -1.22
SMC1A-202ENST00000375340 ADORA1P30542 326 aa7.42□□□□□ -1.22
SMC1A-202ENST00000375340 CHMP4BP1P59074 171 aa7.42□□□□□ -1.22
SMC1A-202ENST00000375340 POSTNQ15063 836 aa7.42□□□□□ -1.22
SMC1A-202ENST00000375340 NAA16Q6N069 864 aaPredicted RBP7.42□□□□□ -1.22
SMC1A-202ENST00000375340 DZIP3Q86Y13 1208 aaKnown RBP7.42□□□□□ -1.22
SMC1A-202ENST00000375340 KBTBD3Q8NAB2 608 aa7.42□□□□□ -1.22
SMC1A-202ENST00000375340 STAMQ92783 540 aa7.42□□□□□ -1.22
SMC1A-202ENST00000375340 OSBPL3Q9H4L5 887 aa7.42□□□□□ -1.22
SMC1A-202ENST00000375340 DMTNQ08495 405 aa7.42□□□□□ -1.22
SMC1A-202ENST00000375340 ERCC6LQ2NKX8 1250 aa7.42□□□□□ -1.22
SMC1A-202ENST00000375340 KRT40Q6A162 431 aa7.42□□□□□ -1.22
SMC1A-202ENST00000375340 ZNF219Q9P2Y4 722 aaPredicted RBP7.42□□□□□ -1.22
SMC1A-202ENST00000375340 PFKFB2O60825 505 aa7.42□□□□□ -1.22
SMC1A-202ENST00000375340 PRDM1O75626 825 aa7.42□□□□□ -1.22
SMC1A-202ENST00000375340 ZNF532Q9HCE3 1301 aa7.42□□□□□ -1.22
SMC1A-202ENST00000375340 ZNF827Q17R98 1081 aa7.42□□□□□ -1.22
SMC1A-202ENST00000375340 CARMIL3Q8ND23 1372 aa7.42□□□□□ -1.22
SMC1A-202ENST00000375340 CPSF1Q10570 1443 aaKnown RBP7.42□□□□□ -1.22
SMC1A-202ENST00000375340 TMEM110-MUSTN1A8MSY1 372 aa7.42□□□□□ -1.22
SMC1A-202ENST00000375340 F8W031 263 aaPredicted RBP7.42□□□□□ -1.22
SMC1A-202ENST00000375340 GIGYF1O75420 1035 aaPredicted RBP7.42□□□□□ -1.22
SMC1A-202ENST00000375340 NAPAP54920 295 aa7.42□□□□□ -1.22
SMC1A-202ENST00000375340 PICALMQ13492 652 aa7.42□□□□□ -1.22
SMC1A-202ENST00000375340 ZNF215Q9UL58 517 aaPredicted RBP7.42□□□□□ -1.22
SMC1A-202ENST00000375340 ATP5JP18859 108 aa7.42□□□□□ -1.22
SMC1A-202ENST00000375340 CKAP4Q07065 602 aaKnown RBP7.42□□□□□ -1.22
SMC1A-202ENST00000375340 HDXQ7Z353 690 aa7.42□□□□□ -1.22
SMC1A-202ENST00000375340 IFT81Q8WYA0 676 aa7.42□□□□□ -1.22
SMC1A-202ENST00000375340 TAB2Q9NYJ8 693 aa7.42□□□□□ -1.22
SMC1A-202ENST00000375340 NEXMIFQ5QGS0 1516 aa7.42□□□□□ -1.22
SMC1A-202ENST00000375340 PAFAH1B1P43034 410 aa7.42□□□□□ -1.22
SMC1A-202ENST00000375340 TCERG1LQ5VWI1 586 aa7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 160.9 ms