RNA–Protein interactions for RNA: ENST00000298396.6

SSX3-201, Transcript of SSX family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SSX3, Length 1,232 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3-201ENST00000298396 PODXL2Q9NZ53 605 aa7.34□□□□□ -1.23
SSX3-201ENST00000298396 NOP58Q9Y2X3 529 aaKnown RBP7.34□□□□□ -1.23
SSX3-201ENST00000298396 PCDHB3Q9Y5E6 796 aa7.34□□□□□ -1.23
SSX3-201ENST00000298396 LTBP3Q9NS15 1303 aa7.33□□□□□ -1.24
SSX3-201ENST00000298396 CDK5RAP2Q96SN8 1893 aa7.33□□□□□ -1.24
SSX3-201ENST00000298396 CIAO1O76071 339 aa7.33□□□□□ -1.24
SSX3-201ENST00000298396 IGHDP01880 384 aa7.33□□□□□ -1.24
SSX3-201ENST00000298396 FGFR2P21802 821 aa7.33□□□□□ -1.24
SSX3-201ENST00000298396 IGHMBP2P38935 993 aaKnown RBP7.33□□□□□ -1.24
SSX3-201ENST00000298396 CCDC93Q567U6 631 aa7.33□□□□□ -1.24
SSX3-201ENST00000298396 TJAP1Q5JTD0 557 aa7.33□□□□□ -1.24
SSX3-201ENST00000298396 LDHAL6AQ6ZMR3 332 aa7.33□□□□□ -1.24
SSX3-201ENST00000298396 TMC4Q7Z404 712 aa7.33□□□□□ -1.24
SSX3-201ENST00000298396 TXNRD3Q86VQ6 643 aa7.33□□□□□ -1.24
SSX3-201ENST00000298396 RPAP2Q8IXW5 612 aaPredicted RBP7.33□□□□□ -1.24
SSX3-201ENST00000298396 EXOC6BQ9Y2D4 811 aa7.33□□□□□ -1.24
SSX3-201ENST00000298396 SLC27A5Q9Y2P5 690 aa7.33□□□□□ -1.24
SSX3-201ENST00000298396 MYH2Q9UKX2 1941 aa7.33□□□□□ -1.24
SSX3-201ENST00000298396 XDHP47989 1333 aa7.32□□□□□ -1.24
SSX3-201ENST00000298396 ECM29Q5VYK3 1845 aa7.32□□□□□ -1.24
SSX3-201ENST00000298396 COL1A1P02452 1464 aaPredicted RBP7.32□□□□□ -1.24
SSX3-201ENST00000298396 ITGBL1O95965 494 aaPredicted RBP7.32□□□□□ -1.24
SSX3-201ENST00000298396 GUCA2AQ02747 115 aa7.32□□□□□ -1.24
SSX3-201ENST00000298396 FKBP4Q02790 459 aaKnown RBP eCLIP7.32□□□□□ -1.24
SSX3-201ENST00000298396 TFCP2Q12800 502 aa7.32□□□□□ -1.24
SSX3-201ENST00000298396 GPR162Q16538 588 aa7.32□□□□□ -1.24
SSX3-201ENST00000298396 TAF7LQ5H9L4 462 aa7.32□□□□□ -1.24
SSX3-201ENST00000298396 BRICD5Q6PL45 260 aa7.32□□□□□ -1.24
SSX3-201ENST00000298396 BLOC1S3Q6QNY0 202 aa7.32□□□□□ -1.24
SSX3-201ENST00000298396 MPNDQ8N594 471 aa7.32□□□□□ -1.24
SSX3-201ENST00000298396 TBC1D16Q8TBP0 767 aa7.32□□□□□ -1.24
SSX3-201ENST00000298396 PSMD1Q99460 953 aa7.32□□□□□ -1.24
SSX3-201ENST00000298396 MPHOSPH8Q99549 860 aa7.32□□□□□ -1.24
SSX3-201ENST00000298396 ZNF277Q9NRM2 450 aaPredicted RBP7.32□□□□□ -1.24
SSX3-201ENST00000298396 CNNM1Q9NRU3 951 aa7.32□□□□□ -1.24
SSX3-201ENST00000298396 POLR3EQ9NVU0 708 aa7.32□□□□□ -1.24
SSX3-201ENST00000298396 HDAC5Q9UQL6 1122 aa7.32□□□□□ -1.24
SSX3-201ENST00000298396 SPDYE5A6NIY4 337 aa7.31□□□□□ -1.24
SSX3-201ENST00000298396 NR1I2O75469 434 aa7.31□□□□□ -1.24
SSX3-201ENST00000298396 SURF6O75683 361 aaKnown RBP7.31□□□□□ -1.24
SSX3-201ENST00000298396 UFL1O94874 794 aa7.31□□□□□ -1.24
SSX3-201ENST00000298396 ADORA1P30542 326 aa7.31□□□□□ -1.24
SSX3-201ENST00000298396 IL15P40933 162 aaPredicted RBP7.31□□□□□ -1.24
SSX3-201ENST00000298396 PTPN5P54829 565 aa7.31□□□□□ -1.24
SSX3-201ENST00000298396 HDAC1Q13547 482 aaPredicted RBP7.31□□□□□ -1.24
SSX3-201ENST00000298396 QPCTQ16769 361 aa7.31□□□□□ -1.24
SSX3-201ENST00000298396 PUS10Q3MIT2 529 aaKnown RBP7.31□□□□□ -1.24
SSX3-201ENST00000298396 METTL24Q5JXM2 366 aa7.31□□□□□ -1.24
SSX3-201ENST00000298396 SOGA3Q5TF21 947 aa7.31□□□□□ -1.24
SSX3-201ENST00000298396 CC2D2BQ6DHV5 1058 aa7.31□□□□□ -1.24
SSX3-201ENST00000298396 DPP8Q6V1X1 898 aaPredicted RBP7.31□□□□□ -1.24
SSX3-201ENST00000298396 ARHGAP27Q6ZUM4 889 aa7.31□□□□□ -1.24
SSX3-201ENST00000298396 SCUBE3Q8IX30 993 aa7.31□□□□□ -1.24
SSX3-201ENST00000298396 RTKN2Q8IZC4 609 aa7.31□□□□□ -1.24
SSX3-201ENST00000298396 CHMP4BQ9H444 224 aaKnown RBP7.31□□□□□ -1.24
SSX3-201ENST00000298396 DCTPP1Q9H773 170 aa7.31□□□□□ -1.24
SSX3-201ENST00000298396 NSFL1CQ9UNZ2 370 aaKnown RBP7.31□□□□□ -1.24
SSX3-201ENST00000298396 MED23Q9ULK4 1368 aa7.31□□□□□ -1.24
SSX3-201ENST00000298396 MAST2Q6P0Q8 1798 aa7.31□□□□□ -1.24
SSX3-201ENST00000298396 ZNF804BA4D1E1 1349 aa7.3□□□□□ -1.24
SSX3-201ENST00000298396 MROH5Q6ZUA9 1318 aa7.3□□□□□ -1.24
SSX3-201ENST00000298396 WDR90Q96KV7 1748 aa7.3□□□□□ -1.24
SSX3-201ENST00000298396 SCN4AP35499 1836 aa7.3□□□□□ -1.24
SSX3-201ENST00000298396 YDJCA8MPS7 323 aa7.3□□□□□ -1.24
SSX3-201ENST00000298396 SMARCA5O60264 1052 aaPredicted RBP7.3□□□□□ -1.24
SSX3-201ENST00000298396 PDE8BO95263 885 aa7.3□□□□□ -1.24
SSX3-201ENST00000298396 KIAA2012Q0VF49 1180 aa7.3□□□□□ -1.24
SSX3-201ENST00000298396 AAMPQ13685 434 aa7.3□□□□□ -1.24
SSX3-201ENST00000298396 AOC3Q16853 763 aa7.3□□□□□ -1.24
SSX3-201ENST00000298396 Q3C1V9 767 aa7.3□□□□□ -1.24
SSX3-201ENST00000298396 C15orf52Q6ZUT6 534 aaKnown RBP7.3□□□□□ -1.24
SSX3-201ENST00000298396 RHPN1Q8TCX5 695 aa7.3□□□□□ -1.24
SSX3-201ENST00000298396 MTRQ99707 1265 aa7.3□□□□□ -1.24
SSX3-201ENST00000298396 TAOK3Q9H2K8 898 aa7.3□□□□□ -1.24
SSX3-201ENST00000298396 IL21Q9HBE4 155 aa7.3□□□□□ -1.24
SSX3-201ENST00000298396 KCNQ5Q9NR82 932 aa7.3□□□□□ -1.24
SSX3-201ENST00000298396 TLR7Q9NYK1 1049 aaKnown RBP7.3□□□□□ -1.24
SSX3-201ENST00000298396 ANKIB1Q9P2G1 1089 aa7.3□□□□□ -1.24
SSX3-201ENST00000298396 GGA1Q9UJY5 639 aa7.3□□□□□ -1.24
SSX3-201ENST00000298396 KDM2BQ8NHM5 1336 aa7.29□□□□□ -1.24
SSX3-201ENST00000298396 APBB1O00213 710 aa7.29□□□□□ -1.24
SSX3-201ENST00000298396 GRIN3BO60391 1043 aa7.29□□□□□ -1.24
SSX3-201ENST00000298396 HMMRO75330 724 aa7.29□□□□□ -1.24
SSX3-201ENST00000298396 ATP2B4P23634 1241 aa7.29□□□□□ -1.24
SSX3-201ENST00000298396 IARSP41252 1262 aaKnown RBP7.29□□□□□ -1.24
SSX3-201ENST00000298396 TIMM10P62072 90 aa7.29□□□□□ -1.24
SSX3-201ENST00000298396 G3BP1Q13283 466 aaKnown RBP eCLIP7.29□□□□□ -1.24
SSX3-201ENST00000298396 UBE4AQ14139 1066 aa7.29□□□□□ -1.24
SSX3-201ENST00000298396 PUM3Q15397 648 aaKnown RBP7.29□□□□□ -1.24
SSX3-201ENST00000298396 MSS51Q4VC12 460 aa7.29□□□□□ -1.24
SSX3-201ENST00000298396 RNF19BQ6ZMZ0 732 aa7.29□□□□□ -1.24
SSX3-201ENST00000298396 RETREG3Q86VR2 466 aa7.29□□□□□ -1.24
SSX3-201ENST00000298396 SMC5Q8IY18 1101 aa7.29□□□□□ -1.24
SSX3-201ENST00000298396 EAF2Q96CJ1 260 aaPredicted RBP7.29□□□□□ -1.24
SSX3-201ENST00000298396 FAM84BQ96KN1 310 aaPredicted RBP7.29□□□□□ -1.24
SSX3-201ENST00000298396 ANKRD2Q9GZV1 360 aa7.29□□□□□ -1.24
SSX3-201ENST00000298396 IL1RAPL2Q9NP60 686 aa7.29□□□□□ -1.24
SSX3-201ENST00000298396 LEMD3Q9Y2U8 911 aa7.29□□□□□ -1.24
SSX3-201ENST00000298396 FOCADQ5VW36 1801 aa7.29□□□□□ -1.24
SSX3-201ENST00000298396 SALL3Q9BXA9 1300 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms