RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 Q6ZWC4 215 aa14.23□□□□□ -0.13
CLN3-260ENST00000637578 KIR2DL5AQ8N109 375 aa14.23□□□□□ -0.13
CLN3-260ENST00000637578 KIR2DL5BQ8NHK3 375 aa14.23□□□□□ -0.13
CLN3-260ENST00000637578 METTL26Q96S19 204 aa14.23□□□□□ -0.13
CLN3-260ENST00000637578 U3KQE9 123 aa14.23□□□□□ -0.13
CLN3-260ENST00000637578 CSMD3Q7Z407 3707 aa14.23□□□□□ -0.13
CLN3-260ENST00000637578 hCG_2014768A0A024R1R8 64 aa14.22□□□□□ -0.13
CLN3-260ENST00000637578 TOMM40O96008 361 aa14.22□□□□□ -0.13
CLN3-260ENST00000637578 RD3LP0DJH9 198 aa14.22□□□□□ -0.13
CLN3-260ENST00000637578 PSG1P11464 419 aa14.22□□□□□ -0.13
CLN3-260ENST00000637578 APOC4P55056 127 aa14.22□□□□□ -0.13
CLN3-260ENST00000637578 PAFAH1B2P68402 229 aa14.22□□□□□ -0.13
CLN3-260ENST00000637578 BAXQ07812 192 aa14.22□□□□□ -0.13
CLN3-260ENST00000637578 Q8WTZ3 238 aa14.22□□□□□ -0.13
CLN3-260ENST00000637578 MS4A6AQ9H2W1 248 aa14.22□□□□□ -0.13
CLN3-260ENST00000637578 TMEM231Q9H6L2 316 aa14.22□□□□□ -0.13
CLN3-260ENST00000637578 NPVFQ9HCQ7 196 aa14.22□□□□□ -0.13
CLN3-260ENST00000637578 IGHV3-66A0A0C4DH42 116 aa14.22□□□□□ -0.13
CLN3-260ENST00000637578 A0A1W2PS18 150 aa14.22□□□□□ -0.13
CLN3-260ENST00000637578 G3V3Q6 166 aa14.22□□□□□ -0.13
CLN3-260ENST00000637578 UBE2CO00762 179 aa14.22□□□□□ -0.13
CLN3-260ENST00000637578 RPL12P30050 165 aaKnown RBP14.22□□□□□ -0.13
CLN3-260ENST00000637578 TFPI2P48307 235 aa14.22□□□□□ -0.13
CLN3-260ENST00000637578 WFDC3Q8IUB2 231 aa14.22□□□□□ -0.13
CLN3-260ENST00000637578 APRG1Q8IVJ8 170 aa14.22□□□□□ -0.13
CLN3-260ENST00000637578 GBGT1Q8N5D6 347 aa14.22□□□□□ -0.13
CLN3-260ENST00000637578 OR5C1Q8NGR4 320 aa14.22□□□□□ -0.13
CLN3-260ENST00000637578 TMEM147Q9BVK8 224 aa14.22□□□□□ -0.13
CLN3-260ENST00000637578 UQCC1Q9NVA1 299 aa14.22□□□□□ -0.13
CLN3-260ENST00000637578 TP53TG1Q9Y2A0 90 aa14.22□□□□□ -0.13
CLN3-260ENST00000637578 IGKV3-7A0A075B6H7 116 aa14.21□□□□□ -0.14
CLN3-260ENST00000637578 OR2F1Q13607 317 aa14.21□□□□□ -0.14
CLN3-260ENST00000637578 VWC2Q2TAL6 325 aa14.21□□□□□ -0.14
CLN3-260ENST00000637578 MAP6D1Q9H9H5 199 aa14.21□□□□□ -0.14
CLN3-260ENST00000637578 HSPB11Q9Y547 144 aa14.21□□□□□ -0.14
CLN3-260ENST00000637578 SMLR1H3BR10 107 aa14.2□□□□□ -0.14
CLN3-260ENST00000637578 IL4P05112 153 aa14.2□□□□□ -0.14
CLN3-260ENST00000637578 FABP1P07148 127 aa14.2□□□□□ -0.14
CLN3-260ENST00000637578 CLINT1Q14677 625 aa14.2□□□□□ -0.14
CLN3-260ENST00000637578 ZFAND6Q6FIF0 208 aa14.2□□□□□ -0.14
CLN3-260ENST00000637578 TEPPQ6URK8 271 aa14.2□□□□□ -0.14
CLN3-260ENST00000637578 OR51G1Q8NGK1 321 aa14.2□□□□□ -0.14
CLN3-260ENST00000637578 STARD9Q9P2P6 4700 aa14.2□□□□□ -0.14
CLN3-260ENST00000637578 DYNC2H1Q8NCM8 4307 aaKnown RBP14.19□□□□□ -0.14
CLN3-260ENST00000637578 FXYD6-FXYD2A0A087WZ82 144 aa14.19□□□□□ -0.14
CLN3-260ENST00000637578 UBE2L5PA0A1B0GUS4 154 aa14.19□□□□□ -0.14
CLN3-260ENST00000637578 A0A1B0GVG6 124 aa14.19□□□□□ -0.14
CLN3-260ENST00000637578 ZNF124Q15973 351 aa14.19□□□□□ -0.14
CLN3-260ENST00000637578 ATP6V1FQ16864 119 aa14.19□□□□□ -0.14
CLN3-260ENST00000637578 TMEM182Q6ZP80 229 aaPredicted RBP14.19□□□□□ -0.14
CLN3-260ENST00000637578 GATA2P23769 480 aaPredicted RBP14.18□□□□□ -0.14
CLN3-260ENST00000637578 USF2Q15853 346 aaPredicted RBP14.18□□□□□ -0.14
CLN3-260ENST00000637578 CYP2G1PQ6ZSU1 146 aa14.18□□□□□ -0.14
CLN3-260ENST00000637578 STPG3Q8N7X2 389 aa14.18□□□□□ -0.14
CLN3-260ENST00000637578 IL17DQ8TAD2 202 aa14.18□□□□□ -0.14
CLN3-260ENST00000637578 DNASE2O00115 360 aaPredicted RBP14.17□□□□□ -0.14
CLN3-260ENST00000637578 SPRY2O43597 315 aa14.17□□□□□ -0.14
CLN3-260ENST00000637578 HNRNPCP07910 306 aaKnown RBP eCLIP14.17□□□□□ -0.14
CLN3-260ENST00000637578 RPL35AP18077 110 aaKnown RBP14.17□□□□□ -0.14
CLN3-260ENST00000637578 RNF183Q96D59 192 aa14.17□□□□□ -0.14
CLN3-260ENST00000637578 RNF125Q96EQ8 232 aa14.17□□□□□ -0.14
CLN3-260ENST00000637578 NARS2Q96I59 477 aaKnown RBP14.17□□□□□ -0.14
CLN3-260ENST00000637578 AQP10Q96PS8 301 aa14.17□□□□□ -0.14
CLN3-260ENST00000637578 MGST2Q99735 147 aa14.17□□□□□ -0.14
CLN3-260ENST00000637578 PBDC1Q9BVG4 233 aa14.17□□□□□ -0.14
CLN3-260ENST00000637578 SMIM3Q9BZL3 60 aa14.17□□□□□ -0.14
CLN3-260ENST00000637578 WDR83OSQ9Y284 106 aa14.17□□□□□ -0.14
CLN3-260ENST00000637578 K7EQG2 157 aa14.17□□□□□ -0.14
CLN3-260ENST00000637578 LYZP61626 148 aa14.17□□□□□ -0.14
CLN3-260ENST00000637578 RPL11P62913 178 aaKnown RBP14.17□□□□□ -0.14
CLN3-260ENST00000637578 C16orf54Q6UWD8 224 aa14.17□□□□□ -0.14
CLN3-260ENST00000637578 ZNF546Q86UE3 836 aa14.17□□□□□ -0.14
CLN3-260ENST00000637578 FAM24BQ8N5W8 94 aa14.17□□□□□ -0.14
CLN3-260ENST00000637578 GRAMD2BQ96HH9 432 aa14.17□□□□□ -0.14
CLN3-260ENST00000637578 ST6GAL2Q96JF0 529 aa14.17□□□□□ -0.14
CLN3-260ENST00000637578 AGPAT2O15120 278 aa14.16□□□□□ -0.14
CLN3-260ENST00000637578 DEFB135Q30KP9 77 aa14.16□□□□□ -0.14
CLN3-260ENST00000637578 BPIFCQ8NFQ6 507 aa14.16□□□□□ -0.14
CLN3-260ENST00000637578 DCANP1Q8TF63 244 aa14.16□□□□□ -0.14
CLN3-260ENST00000637578 GLMPQ8WWB7 406 aa14.16□□□□□ -0.14
CLN3-260ENST00000637578 ATP5SQ99766 215 aa14.16□□□□□ -0.14
CLN3-260ENST00000637578 TNFSF18Q9UNG2 199 aa14.16□□□□□ -0.14
CLN3-260ENST00000637578 TENM2Q9NT68 2774 aa14.16□□□□□ -0.14
CLN3-260ENST00000637578 RNF222A6NCQ9 220 aa14.15□□□□□ -0.14
CLN3-260ENST00000637578 FGF7P21781 194 aa14.15□□□□□ -0.14
CLN3-260ENST00000637578 NUP62P37198 522 aaPredicted RBP14.15□□□□□ -0.14
CLN3-260ENST00000637578 CSTL1Q9H114 145 aa14.15□□□□□ -0.14
CLN3-260ENST00000637578 SLC45A2Q9UMX9 530 aa14.15□□□□□ -0.14
CLN3-260ENST00000637578 BUB3O43684 328 aa14.14□□□□□ -0.15
CLN3-260ENST00000637578 CAMLGP49069 296 aa14.14□□□□□ -0.15
CLN3-260ENST00000637578 DEFB131AP59861 70 aa14.14□□□□□ -0.15
CLN3-260ENST00000637578 SELENOTP62341 195 aa14.14□□□□□ -0.15
CLN3-260ENST00000637578 INO80EQ8NBZ0 244 aaPredicted RBP14.14□□□□□ -0.15
CLN3-260ENST00000637578 WFDC1Q9HC57 220 aa14.14□□□□□ -0.15
CLN3-260ENST00000637578 FBXL17Q9UF56 701 aa14.14□□□□□ -0.15
CLN3-260ENST00000637578 RABAC1Q9UI14 185 aa14.14□□□□□ -0.15
CLN3-260ENST00000637578 HELTA6NFD8 242 aa14.13□□□□□ -0.15
CLN3-260ENST00000637578 CFDP00746 253 aaPredicted RBP14.13□□□□□ -0.15
CLN3-260ENST00000637578 LINC00869P0C866 280 aa14.13□□□□□ -0.15
CLN3-260ENST00000637578 AP2S1P53680 142 aaPredicted RBP14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms