RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 TM2D3Q9BRN9 247 aa13.34□□□□□ -0.27
CLN3-247ENST00000636351 STARD9Q9P2P6 4700 aa13.33□□□□□ -0.28
CLN3-247ENST00000636351 OR4C46A6NHA9 309 aa13.33□□□□□ -0.28
CLN3-247ENST00000636351 DFFBO76075 338 aa13.33□□□□□ -0.28
CLN3-247ENST00000636351 CD5P06127 495 aa13.33□□□□□ -0.28
CLN3-247ENST00000636351 CD7P09564 240 aa13.33□□□□□ -0.28
CLN3-247ENST00000636351 IGHV4-30-4P0DP06 118 aa13.33□□□□□ -0.28
CLN3-247ENST00000636351 GBGT1Q8N5D6 347 aa13.33□□□□□ -0.28
CLN3-247ENST00000636351 THAP6Q8TBB0 222 aa13.33□□□□□ -0.28
CLN3-247ENST00000636351 LYSTQ99698 3801 aa13.32□□□□□ -0.28
CLN3-247ENST00000636351 CSMD3Q7Z407 3707 aa13.32□□□□□ -0.28
CLN3-247ENST00000636351 GIPP09681 153 aaPredicted RBP13.32□□□□□ -0.28
CLN3-247ENST00000636351 LINC00869P0C866 280 aa13.32□□□□□ -0.28
CLN3-247ENST00000636351 ORM2P19652 201 aa13.32□□□□□ -0.28
CLN3-247ENST00000636351 SELENOTP62341 195 aa13.32□□□□□ -0.28
CLN3-247ENST00000636351 PAFAH1B2P68402 229 aa13.32□□□□□ -0.28
CLN3-247ENST00000636351 NHLH2Q02577 135 aa13.32□□□□□ -0.28
CLN3-247ENST00000636351 BAXQ07812 192 aa13.32□□□□□ -0.28
CLN3-247ENST00000636351 RAB31Q13636 194 aa13.32□□□□□ -0.28
CLN3-247ENST00000636351 ZNF546Q86UE3 836 aa13.32□□□□□ -0.28
CLN3-247ENST00000636351 Q8N1Y9 231 aa13.32□□□□□ -0.28
CLN3-247ENST00000636351 OR1B1Q8NGR6 318 aa13.32□□□□□ -0.28
CLN3-247ENST00000636351 RNF126Q9BV68 326 aa13.32□□□□□ -0.28
CLN3-247ENST00000636351 DOK5Q9P104 306 aa13.32□□□□□ -0.28
CLN3-247ENST00000636351 DNASE2O00115 360 aaPredicted RBP13.31□□□□□ -0.28
CLN3-247ENST00000636351 FGF7P21781 194 aa13.31□□□□□ -0.28
CLN3-247ENST00000636351 CLINT1Q14677 625 aa13.31□□□□□ -0.28
CLN3-247ENST00000636351 ATP6V1FQ16864 119 aa13.31□□□□□ -0.28
CLN3-247ENST00000636351 TMEM182Q6ZP80 229 aaPredicted RBP13.31□□□□□ -0.28
CLN3-247ENST00000636351 WFDC3Q8IUB2 231 aa13.31□□□□□ -0.28
CLN3-247ENST00000636351 STXBP6Q8NFX7 210 aa13.31□□□□□ -0.28
CLN3-247ENST00000636351 OR5C1Q8NGR4 320 aa13.31□□□□□ -0.28
CLN3-247ENST00000636351 TUBA4BQ9H853 241 aa13.31□□□□□ -0.28
CLN3-247ENST00000636351 EDA2RQ9HAV5 297 aa13.31□□□□□ -0.28
CLN3-247ENST00000636351 U3KQE9 123 aa13.31□□□□□ -0.28
CLN3-247ENST00000636351 BIRC6Q9NR09 4857 aa13.3□□□□□ -0.28
CLN3-247ENST00000636351 HELTA6NFD8 242 aa13.3□□□□□ -0.28
CLN3-247ENST00000636351 AGPAT2O15120 278 aa13.3□□□□□ -0.28
CLN3-247ENST00000636351 RAP2BP61225 183 aa13.3□□□□□ -0.28
CLN3-247ENST00000636351 FAM90A2PQ658T7 463 aa13.3□□□□□ -0.28
CLN3-247ENST00000636351 C16orf54Q6UWD8 224 aa13.3□□□□□ -0.28
CLN3-247ENST00000636351 ASB13Q8WXK3 278 aa13.3□□□□□ -0.28
CLN3-247ENST00000636351 MGST2Q99735 147 aa13.3□□□□□ -0.28
CLN3-247ENST00000636351 WFDC10AQ9H1F0 79 aa13.3□□□□□ -0.28
CLN3-247ENST00000636351 C19orf73Q9NVV2 129 aa13.3□□□□□ -0.28
CLN3-247ENST00000636351 UBQLN2Q9UHD9 624 aa13.3□□□□□ -0.28
CLN3-247ENST00000636351 WDR83OSQ9Y284 106 aa13.3□□□□□ -0.28
CLN3-247ENST00000636351 OR11H12B2RN74 326 aa13.29□□□□□ -0.28
CLN3-247ENST00000636351 OR5G3P0C626 314 aa13.29□□□□□ -0.28
CLN3-247ENST00000636351 RPL12P30050 165 aaKnown RBP13.29□□□□□ -0.28
CLN3-247ENST00000636351 S100A7P31151 101 aa13.29□□□□□ -0.28
CLN3-247ENST00000636351 CAMLGP49069 296 aa13.29□□□□□ -0.28
CLN3-247ENST00000636351 FGL1Q08830 312 aa13.29□□□□□ -0.28
CLN3-247ENST00000636351 VWC2Q2TAL6 325 aa13.29□□□□□ -0.28
CLN3-247ENST00000636351 DEFB125Q8N687 156 aa13.29□□□□□ -0.28
CLN3-247ENST00000636351 GLMPQ8WWB7 406 aa13.29□□□□□ -0.28
CLN3-247ENST00000636351 MS4A6AQ9H2W1 248 aa13.29□□□□□ -0.28
CLN3-247ENST00000636351 HSPB11Q9Y547 144 aa13.29□□□□□ -0.28
CLN3-247ENST00000636351 BUB3O43684 328 aa13.28□□□□□ -0.28
CLN3-247ENST00000636351 HYPMO75409 117 aa13.28□□□□□ -0.28
CLN3-247ENST00000636351 SIGLEC15Q6ZMC9 328 aa13.28□□□□□ -0.28
CLN3-247ENST00000636351 GGTLC1Q9BX51 225 aa13.28□□□□□ -0.28
CLN3-247ENST00000636351 ARL6Q9H0F7 186 aa13.28□□□□□ -0.28
CLN3-247ENST00000636351 SRD5A3Q9H8P0 318 aa13.28□□□□□ -0.28
CLN3-247ENST00000636351 SLC25A22Q9H936 323 aa13.28□□□□□ -0.28
CLN3-247ENST00000636351 SLC45A2Q9UMX9 530 aa13.28□□□□□ -0.28
CLN3-247ENST00000636351 HIGD1AQ9Y241 93 aa13.28□□□□□ -0.28
CLN3-247ENST00000636351 A8MZ25 164 aa13.27□□□□□ -0.29
CLN3-247ENST00000636351 AP2S1P53680 142 aaPredicted RBP13.27□□□□□ -0.29
CLN3-247ENST00000636351 S100A7AQ86SG5 101 aa13.27□□□□□ -0.29
CLN3-247ENST00000636351 OR8I2Q8N0Y5 310 aa13.27□□□□□ -0.29
CLN3-247ENST00000636351 ATP5SQ99766 215 aa13.27□□□□□ -0.29
CLN3-247ENST00000636351 SMIM3Q9BZL3 60 aa13.27□□□□□ -0.29
CLN3-247ENST00000636351 FBXL17Q9UF56 701 aa13.27□□□□□ -0.29
CLN3-247ENST00000636351 FXYD6-FXYD2A0A087WZ82 144 aa13.26□□□□□ -0.29
CLN3-247ENST00000636351 COX7A2P2O60397 106 aa13.26□□□□□ -0.29
CLN3-247ENST00000636351 C1orf194Q5T5A4 169 aa13.26□□□□□ -0.29
CLN3-247ENST00000636351 STPG3Q8N7X2 389 aa13.26□□□□□ -0.29
CLN3-247ENST00000636351 OR2T35Q8NGX2 323 aa13.26□□□□□ -0.29
CLN3-247ENST00000636351 SPATA25Q9BR10 227 aa13.26□□□□□ -0.29
CLN3-247ENST00000636351 MPDU1O75352 247 aa13.25□□□□□ -0.29
CLN3-247ENST00000636351 ODF3L2Q3SX64 289 aa13.25□□□□□ -0.29
CLN3-247ENST00000636351 PXDC1Q5TGL8 231 aa13.25□□□□□ -0.29
CLN3-247ENST00000636351 MIC13Q5XKP0 118 aa13.25□□□□□ -0.29
CLN3-247ENST00000636351 Q6ZRG5 221 aa13.25□□□□□ -0.29
CLN3-247ENST00000636351 SCRT1Q9BWW7 348 aa13.25□□□□□ -0.29
CLN3-247ENST00000636351 SLC25A39Q9BZJ4 359 aaPredicted RBP13.25□□□□□ -0.29
CLN3-247ENST00000636351 TRAV2A0A0B4J234 112 aa13.24□□□□□ -0.29
CLN3-247ENST00000636351 ZNF98A6NK75 572 aa13.24□□□□□ -0.29
CLN3-247ENST00000636351 H3BRN7 92 aa13.24□□□□□ -0.29
CLN3-247ENST00000636351 PLP1P60201 277 aa13.24□□□□□ -0.29
CLN3-247ENST00000636351 B2MP61769 119 aa13.24□□□□□ -0.29
CLN3-247ENST00000636351 OPCMLQ14982 345 aa13.24□□□□□ -0.29
CLN3-247ENST00000636351 HAGHQ16775 308 aa13.24□□□□□ -0.29
CLN3-247ENST00000636351 Q5BKY6 102 aa13.24□□□□□ -0.29
CLN3-247ENST00000636351 LEMD1Q68G75 181 aa13.24□□□□□ -0.29
CLN3-247ENST00000636351 ZNF709Q8N972 641 aa13.24□□□□□ -0.29
CLN3-247ENST00000636351 UHRF2Q96PU4 802 aa13.24□□□□□ -0.29
CLN3-247ENST00000636351 NPCDR1Q9BY65 106 aa13.24□□□□□ -0.29
CLN3-247ENST00000636351 ARV1Q9H2C2 271 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 106.5 ms