RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 ORM2P19652 201 aa13.57□□□□□ -0.24
CLN3-243ENST00000635973 TFPI2P48307 235 aa13.57□□□□□ -0.24
CLN3-243ENST00000635973 SELENOTP62341 195 aa13.57□□□□□ -0.24
CLN3-243ENST00000635973 PAFAH1B2P68402 229 aa13.57□□□□□ -0.24
CLN3-243ENST00000635973 NHLH2Q02577 135 aa13.57□□□□□ -0.24
CLN3-243ENST00000635973 ATP6V1FQ16864 119 aa13.57□□□□□ -0.24
CLN3-243ENST00000635973 CASC10Q5T4H9 136 aa13.57□□□□□ -0.24
CLN3-243ENST00000635973 OR5C1Q8NGR4 320 aa13.57□□□□□ -0.24
CLN3-243ENST00000635973 OR1B1Q8NGR6 318 aa13.57□□□□□ -0.24
CLN3-243ENST00000635973 TM2D3Q9BRN9 247 aa13.57□□□□□ -0.24
CLN3-243ENST00000635973 RNF126Q9BV68 326 aa13.57□□□□□ -0.24
CLN3-243ENST00000635973 C19orf73Q9NVV2 129 aa13.57□□□□□ -0.24
CLN3-243ENST00000635973 OR4C46A6NHA9 309 aa13.56□□□□□ -0.24
CLN3-243ENST00000635973 DNASE2O00115 360 aaPredicted RBP13.56□□□□□ -0.24
CLN3-243ENST00000635973 CD7P09564 240 aa13.56□□□□□ -0.24
CLN3-243ENST00000635973 S100A7P31151 101 aa13.56□□□□□ -0.24
CLN3-243ENST00000635973 RAP2BP61225 183 aa13.56□□□□□ -0.24
CLN3-243ENST00000635973 FGL1Q08830 312 aa13.56□□□□□ -0.24
CLN3-243ENST00000635973 CLINT1Q14677 625 aa13.56□□□□□ -0.24
CLN3-243ENST00000635973 GBGT1Q8N5D6 347 aa13.56□□□□□ -0.24
CLN3-243ENST00000635973 CITED4Q96RK1 184 aa13.56□□□□□ -0.24
CLN3-243ENST00000635973 SPATA25Q9BR10 227 aa13.56□□□□□ -0.24
CLN3-243ENST00000635973 DOK5Q9P104 306 aa13.56□□□□□ -0.24
CLN3-243ENST00000635973 U3KQE9 123 aa13.56□□□□□ -0.24
CLN3-243ENST00000635973 HELTA6NFD8 242 aa13.55□□□□□ -0.24
CLN3-243ENST00000635973 AGPAT2O15120 278 aa13.55□□□□□ -0.24
CLN3-243ENST00000635973 FGF7P21781 194 aa13.55□□□□□ -0.24
CLN3-243ENST00000635973 RPL12P30050 165 aaKnown RBP13.55□□□□□ -0.24
CLN3-243ENST00000635973 CAMLGP49069 296 aa13.55□□□□□ -0.24
CLN3-243ENST00000635973 VWC2Q2TAL6 325 aa13.55□□□□□ -0.24
CLN3-243ENST00000635973 C16orf54Q6UWD8 224 aa13.55□□□□□ -0.24
CLN3-243ENST00000635973 TMEM182Q6ZP80 229 aaPredicted RBP13.55□□□□□ -0.24
CLN3-243ENST00000635973 MGST2Q99735 147 aa13.55□□□□□ -0.24
CLN3-243ENST00000635973 FAM90A2PQ658T7 463 aa13.54□□□□□ -0.24
CLN3-243ENST00000635973 WFDC3Q8IUB2 231 aa13.54□□□□□ -0.24
CLN3-243ENST00000635973 STXBP6Q8NFX7 210 aa13.54□□□□□ -0.24
CLN3-243ENST00000635973 WDR83OSQ9Y284 106 aa13.54□□□□□ -0.24
CLN3-243ENST00000635973 HSPB11Q9Y547 144 aa13.54□□□□□ -0.24
CLN3-243ENST00000635973 BUB3O43684 328 aa13.53□□□□□ -0.24
CLN3-243ENST00000635973 HYPMO75409 117 aa13.53□□□□□ -0.24
CLN3-243ENST00000635973 OR5G3P0C626 314 aa13.53□□□□□ -0.24
CLN3-243ENST00000635973 SIGLEC15Q6ZMC9 328 aa13.53□□□□□ -0.24
CLN3-243ENST00000635973 GLMPQ8WWB7 406 aa13.53□□□□□ -0.24
CLN3-243ENST00000635973 ARL6Q9H0F7 186 aa13.53□□□□□ -0.24
CLN3-243ENST00000635973 MS4A6AQ9H2W1 248 aa13.53□□□□□ -0.24
CLN3-243ENST00000635973 UBQLN2Q9UHD9 624 aa13.53□□□□□ -0.24
CLN3-243ENST00000635973 SLC45A2Q9UMX9 530 aa13.53□□□□□ -0.24
CLN3-243ENST00000635973 HIGD1AQ9Y241 93 aa13.53□□□□□ -0.24
CLN3-243ENST00000635973 OR11H12B2RN74 326 aa13.52□□□□□ -0.25
CLN3-243ENST00000635973 AP2S1P53680 142 aaPredicted RBP13.52□□□□□ -0.25
CLN3-243ENST00000635973 HAGHQ16775 308 aa13.52□□□□□ -0.25
CLN3-243ENST00000635973 S100A7AQ86SG5 101 aa13.52□□□□□ -0.25
CLN3-243ENST00000635973 OR2T35Q8NGX2 323 aa13.52□□□□□ -0.25
CLN3-243ENST00000635973 ATP5SQ99766 215 aa13.52□□□□□ -0.25
CLN3-243ENST00000635973 GGTLC1Q9BX51 225 aa13.52□□□□□ -0.25
CLN3-243ENST00000635973 SMIM3Q9BZL3 60 aa13.52□□□□□ -0.25
CLN3-243ENST00000635973 WFDC10AQ9H1F0 79 aa13.52□□□□□ -0.25
CLN3-243ENST00000635973 SLC25A22Q9H936 323 aa13.52□□□□□ -0.25
CLN3-243ENST00000635973 FBXL17Q9UF56 701 aa13.52□□□□□ -0.25
CLN3-243ENST00000635973 HUWE1Q7Z6Z7 4374 aaKnown RBP13.52□□□□□ -0.25
CLN3-243ENST00000635973 DYNC2H1Q8NCM8 4307 aaKnown RBP13.52□□□□□ -0.25
CLN3-243ENST00000635973 COX7A2P2O60397 106 aa13.51□□□□□ -0.25
CLN3-243ENST00000635973 MPDU1O75352 247 aa13.51□□□□□ -0.25
CLN3-243ENST00000635973 PXDC1Q5TGL8 231 aa13.51□□□□□ -0.25
CLN3-243ENST00000635973 OR8I2Q8N0Y5 310 aa13.51□□□□□ -0.25
CLN3-243ENST00000635973 DEFB125Q8N687 156 aa13.51□□□□□ -0.25
CLN3-243ENST00000635973 STPG3Q8N7X2 389 aa13.51□□□□□ -0.25
CLN3-243ENST00000635973 FXYD6-FXYD2A0A087WZ82 144 aa13.5□□□□□ -0.25
CLN3-243ENST00000635973 OPCMLQ14982 345 aa13.5□□□□□ -0.25
CLN3-243ENST00000635973 C1orf194Q5T5A4 169 aa13.5□□□□□ -0.25
CLN3-243ENST00000635973 MIC13Q5XKP0 118 aa13.5□□□□□ -0.25
CLN3-243ENST00000635973 ZFAND6Q6FIF0 208 aa13.5□□□□□ -0.25
CLN3-243ENST00000635973 Q6ZRG5 221 aa13.5□□□□□ -0.25
CLN3-243ENST00000635973 SLC25A39Q9BZJ4 359 aaPredicted RBP13.5□□□□□ -0.25
CLN3-243ENST00000635973 SRD5A3Q9H8P0 318 aa13.5□□□□□ -0.25
CLN3-243ENST00000635973 TRAV2A0A0B4J234 112 aa13.49□□□□□ -0.25
CLN3-243ENST00000635973 ZNF98A6NK75 572 aa13.49□□□□□ -0.25
CLN3-243ENST00000635973 IFNA5P01569 189 aa13.49□□□□□ -0.25
CLN3-243ENST00000635973 PLP1P60201 277 aa13.49□□□□□ -0.25
CLN3-243ENST00000635973 B2MP61769 119 aa13.49□□□□□ -0.25
CLN3-243ENST00000635973 Q5BKY6 102 aa13.49□□□□□ -0.25
CLN3-243ENST00000635973 ZNF709Q8N972 641 aa13.49□□□□□ -0.25
CLN3-243ENST00000635973 INO80EQ8NBZ0 244 aaPredicted RBP13.49□□□□□ -0.25
CLN3-243ENST00000635973 SCRT1Q9BWW7 348 aa13.49□□□□□ -0.25
CLN3-243ENST00000635973 NPCDR1Q9BY65 106 aa13.49□□□□□ -0.25
CLN3-243ENST00000635973 ARV1Q9H2C2 271 aa13.49□□□□□ -0.25
CLN3-243ENST00000635973 RYR2Q92736 4967 aa13.49□□□□□ -0.25
CLN3-243ENST00000635973 H3BRN7 92 aa13.48□□□□□ -0.25
CLN3-243ENST00000635973 RPL29P47914 159 aaKnown RBP13.48□□□□□ -0.25
CLN3-243ENST00000635973 CMC4P56277 68 aaPredicted RBP13.48□□□□□ -0.25
CLN3-243ENST00000635973 ODF3L2Q3SX64 289 aa13.48□□□□□ -0.25
CLN3-243ENST00000635973 LEMD1Q68G75 181 aa13.48□□□□□ -0.25
CLN3-243ENST00000635973 SCGB1C1Q8TD33 95 aa13.48□□□□□ -0.25
CLN3-243ENST00000635973 UHRF2Q96PU4 802 aa13.48□□□□□ -0.25
CLN3-243ENST00000635973 SHANK2-AS3Q9BTD1 123 aa13.48□□□□□ -0.25
CLN3-243ENST00000635973 WDR61Q9GZS3 305 aaKnown RBP13.48□□□□□ -0.25
CLN3-243ENST00000635973 SLC25A32Q9H2D1 315 aa13.48□□□□□ -0.25
CLN3-243ENST00000635973 KCNIP2Q9NS61 270 aa13.48□□□□□ -0.25
CLN3-243ENST00000635973 SLC39A9Q9NUM3 307 aa13.48□□□□□ -0.25
CLN3-243ENST00000635973 PXMP4Q9Y6I8 212 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms