RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 RFNGQ9Y644 331 aa8.59□□□□□ -1.03
UPF3B-204ENST00000619445 VPS13DQ5THJ4 4388 aa8.59□□□□□ -1.04
UPF3B-204ENST00000619445 DNAH10Q8IVF4 4471 aa8.58□□□□□ -1.04
UPF3B-204ENST00000619445 DNAH6Q9C0G6 4158 aa8.58□□□□□ -1.04
UPF3B-204ENST00000619445 PITX3O75364 302 aa8.58□□□□□ -1.04
UPF3B-204ENST00000619445 GALR1P47211 349 aa8.58□□□□□ -1.04
UPF3B-204ENST00000619445 LYZP61626 148 aa8.58□□□□□ -1.04
UPF3B-204ENST00000619445 PRR20EP86478 221 aa8.58□□□□□ -1.04
UPF3B-204ENST00000619445 PRR20CP86479 221 aa8.58□□□□□ -1.04
UPF3B-204ENST00000619445 PRR20DP86480 221 aa8.58□□□□□ -1.04
UPF3B-204ENST00000619445 PRR20BP86481 221 aa8.58□□□□□ -1.04
UPF3B-204ENST00000619445 PRR20AP86496 221 aa8.58□□□□□ -1.04
UPF3B-204ENST00000619445 C12orf74Q32Q52 190 aa8.58□□□□□ -1.04
UPF3B-204ENST00000619445 TMED4Q7Z7H5 227 aa8.58□□□□□ -1.04
UPF3B-204ENST00000619445 S100A7AQ86SG5 101 aa8.58□□□□□ -1.04
UPF3B-204ENST00000619445 THAP8Q8NA92 274 aa8.58□□□□□ -1.04
UPF3B-204ENST00000619445 OR4D5Q8NGN0 318 aa8.58□□□□□ -1.04
UPF3B-204ENST00000619445 LINC00052Q96N35 136 aa8.58□□□□□ -1.04
UPF3B-204ENST00000619445 RPRMQ9NS64 109 aa8.58□□□□□ -1.04
UPF3B-204ENST00000619445 GOLT1BQ9Y3E0 138 aa8.58□□□□□ -1.04
UPF3B-204ENST00000619445 IGKV1D-37A0A075B6S9 117 aa8.57□□□□□ -1.04
UPF3B-204ENST00000619445 H3BMQ9 156 aa8.57□□□□□ -1.04
UPF3B-204ENST00000619445 VAMP1P23763 118 aa8.57□□□□□ -1.04
UPF3B-204ENST00000619445 S100A5P33763 92 aa8.57□□□□□ -1.04
UPF3B-204ENST00000619445 PAX9P55771 341 aa8.57□□□□□ -1.04
UPF3B-204ENST00000619445 UBE2MP61081 183 aaKnown RBP8.57□□□□□ -1.04
UPF3B-204ENST00000619445 ZNF90Q03938 601 aa8.57□□□□□ -1.04
UPF3B-204ENST00000619445 POM121L12Q8N7R1 296 aa8.57□□□□□ -1.04
UPF3B-204ENST00000619445 BPIFCQ8NFQ6 507 aa8.57□□□□□ -1.04
UPF3B-204ENST00000619445 PRR13Q9NZ81 148 aa8.57□□□□□ -1.04
UPF3B-204ENST00000619445 SOCS3O14543 225 aa8.56□□□□□ -1.04
UPF3B-204ENST00000619445 SYNGR2O43760 224 aa8.56□□□□□ -1.04
UPF3B-204ENST00000619445 PSG9Q00887 426 aa8.56□□□□□ -1.04
UPF3B-204ENST00000619445 OXA1LQ15070 435 aa8.56□□□□□ -1.04
UPF3B-204ENST00000619445 ZNF79Q15937 498 aa8.56□□□□□ -1.04
UPF3B-204ENST00000619445 PYDC2Q56P42 97 aa8.56□□□□□ -1.04
UPF3B-204ENST00000619445 OR4B1Q8NGF8 309 aa8.56□□□□□ -1.04
UPF3B-204ENST00000619445 OR1B1Q8NGR6 318 aa8.56□□□□□ -1.04
UPF3B-204ENST00000619445 PAIP2BQ9ULR5 123 aaKnown RBP8.56□□□□□ -1.04
UPF3B-204ENST00000619445 CELA1Q9UNI1 258 aa8.56□□□□□ -1.04
UPF3B-204ENST00000619445 RNF24Q9Y225 148 aa8.56□□□□□ -1.04
UPF3B-204ENST00000619445 HECTD4Q9Y4D8 3996 aa8.55□□□□□ -1.04
UPF3B-204ENST00000619445 HBE1P02100 147 aa8.55□□□□□ -1.04
UPF3B-204ENST00000619445 TRIM63Q969Q1 353 aa8.55□□□□□ -1.04
UPF3B-204ENST00000619445 C16orf92Q96LL3 132 aa8.55□□□□□ -1.04
UPF3B-204ENST00000619445 C7orf50Q9BRJ6 194 aaKnown RBP8.55□□□□□ -1.04
UPF3B-204ENST00000619445 WDR12Q9GZL7 423 aaKnown RBP8.55□□□□□ -1.04
UPF3B-204ENST00000619445 A0A0J9YX75 114 aa8.54□□□□□ -1.04
UPF3B-204ENST00000619445 SFT2D2O95562 160 aa8.54□□□□□ -1.04
UPF3B-204ENST00000619445 IFNA21P01568 189 aa8.54□□□□□ -1.04
UPF3B-204ENST00000619445 IAPPP10997 89 aa8.54□□□□□ -1.04
UPF3B-204ENST00000619445 B2MP61769 119 aa8.54□□□□□ -1.04
UPF3B-204ENST00000619445 OR2F1Q13607 317 aa8.54□□□□□ -1.04
UPF3B-204ENST00000619445 ZNF709Q8N972 641 aa8.54□□□□□ -1.04
UPF3B-204ENST00000619445 NIPSNAP3BQ9BS92 247 aa8.54□□□□□ -1.04
UPF3B-204ENST00000619445 TMEM147Q9BVK8 224 aa8.54□□□□□ -1.04
UPF3B-204ENST00000619445 DOK5Q9P104 306 aa8.54□□□□□ -1.04
UPF3B-204ENST00000619445 STRAPQ9Y3F4 350 aaKnown RBP8.54□□□□□ -1.04
UPF3B-204ENST00000619445 IGHV3OR16-12A0A075B7B8 117 aa8.53□□□□□ -1.04
UPF3B-204ENST00000619445 ZNF98A6NK75 572 aa8.53□□□□□ -1.04
UPF3B-204ENST00000619445 DUSP14O95147 198 aaKnown RBP8.53□□□□□ -1.04
UPF3B-204ENST00000619445 IGKV3-20P01619 116 aa8.53□□□□□ -1.04
UPF3B-204ENST00000619445 SELENOTP62341 195 aa8.53□□□□□ -1.04
UPF3B-204ENST00000619445 AKR1C1Q04828 323 aa8.53□□□□□ -1.04
UPF3B-204ENST00000619445 RRN3P1Q2M238 152 aa8.53□□□□□ -1.04
UPF3B-204ENST00000619445 SPANXN2Q5MJ10 180 aa8.53□□□□□ -1.04
UPF3B-204ENST00000619445 GDF5OSQ5U4N7 250 aa8.53□□□□□ -1.04
UPF3B-204ENST00000619445 FAM78BQ5VT40 261 aa8.53□□□□□ -1.04
UPF3B-204ENST00000619445 DKK2Q9UBU2 259 aa8.53□□□□□ -1.04
UPF3B-204ENST00000619445 IGKV1OR2-108A0A075B7D4 117 aa8.52□□□□□ -1.05
UPF3B-204ENST00000619445 NAP1L6A6NFF2 107 aa8.52□□□□□ -1.05
UPF3B-204ENST00000619445 A8MTW9 85 aa8.52□□□□□ -1.05
UPF3B-204ENST00000619445 WRBO00258 174 aa8.52□□□□□ -1.05
UPF3B-204ENST00000619445 RPL7P18124 248 aaKnown RBP8.52□□□□□ -1.05
UPF3B-204ENST00000619445 EMP1P54849 157 aa8.52□□□□□ -1.05
UPF3B-204ENST00000619445 RAP2BP61225 183 aa8.52□□□□□ -1.05
UPF3B-204ENST00000619445 PPP1R1AQ13522 171 aa8.52□□□□□ -1.05
UPF3B-204ENST00000619445 LGALS9BQ3B8N2 356 aa8.52□□□□□ -1.05
UPF3B-204ENST00000619445 RNF212Q495C1 297 aa8.52□□□□□ -1.05
UPF3B-204ENST00000619445 SPANXN5Q5MJ07 72 aa8.52□□□□□ -1.05
UPF3B-204ENST00000619445 TMEM144Q7Z5S9 345 aa8.52□□□□□ -1.05
UPF3B-204ENST00000619445 IGF2BP2-AS1Q96M15 143 aa8.52□□□□□ -1.05
UPF3B-204ENST00000619445 TMEM208Q9BTX3 173 aa8.52□□□□□ -1.05
UPF3B-204ENST00000619445 RSG1Q9BU20 258 aa8.52□□□□□ -1.05
UPF3B-204ENST00000619445 MAGT1Q9H0U3 335 aa8.52□□□□□ -1.05
UPF3B-204ENST00000619445 SLC25A22Q9H936 323 aa8.52□□□□□ -1.05
UPF3B-204ENST00000619445 LOC102723971A0A1B0GUV8 181 aa8.51□□□□□ -1.05
UPF3B-204ENST00000619445 PRSS46E5RG02 174 aa8.51□□□□□ -1.05
UPF3B-204ENST00000619445 HOXB5P09067 269 aa8.51□□□□□ -1.05
UPF3B-204ENST00000619445 ORM2P19652 201 aa8.51□□□□□ -1.05
UPF3B-204ENST00000619445 INPP1P49441 399 aa8.51□□□□□ -1.05
UPF3B-204ENST00000619445 SOHLH1Q5JUK2 328 aa8.51□□□□□ -1.05
UPF3B-204ENST00000619445 FAM222AQ5U5X8 452 aa8.51□□□□□ -1.05
UPF3B-204ENST00000619445 ZNF767PQ75MW2 155 aa8.51□□□□□ -1.05
UPF3B-204ENST00000619445 UBE2DNLQ8IWF7 75 aa8.51□□□□□ -1.05
UPF3B-204ENST00000619445 SLC35B3Q9H1N7 401 aa8.51□□□□□ -1.05
UPF3B-204ENST00000619445 SLC25A32Q9H2D1 315 aa8.51□□□□□ -1.05
UPF3B-204ENST00000619445 V9GYH0 126 aa8.51□□□□□ -1.05
UPF3B-204ENST00000619445 LYRM9A8MSI8 78 aa8.5□□□□□ -1.05
UPF3B-204ENST00000619445 FNDC10F2Z333 226 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 76.4 ms