RNA–Protein interactions for RNA: ENST00000602239.1

SHKBP1-228, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 450 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-228ENST00000602239 LINC00336Q6ZUF6 198 aa11.22□□□□□ -0.61
SHKBP1-228ENST00000602239 C1orf158Q8N1D5 194 aa11.22□□□□□ -0.61
SHKBP1-228ENST00000602239 C20orf173Q96LM9 149 aa11.22□□□□□ -0.61
SHKBP1-228ENST00000602239 C17orf77Q96MU5 243 aa11.22□□□□□ -0.61
SHKBP1-228ENST00000602239 PFDN2Q9UHV9 154 aa11.22□□□□□ -0.61
SHKBP1-228ENST00000602239 ANXA3P12429 323 aa11.21□□□□□ -0.61
SHKBP1-228ENST00000602239 NUP62P37198 522 aaPredicted RBP11.21□□□□□ -0.61
SHKBP1-228ENST00000602239 TMBIM6P55061 237 aa11.21□□□□□ -0.61
SHKBP1-228ENST00000602239 FAM222AQ5U5X8 452 aa11.21□□□□□ -0.61
SHKBP1-228ENST00000602239 TMEM182Q6ZP80 229 aaPredicted RBP11.21□□□□□ -0.61
SHKBP1-228ENST00000602239 TMED4Q7Z7H5 227 aa11.21□□□□□ -0.61
SHKBP1-228ENST00000602239 OR8I2Q8N0Y5 310 aa11.21□□□□□ -0.61
SHKBP1-228ENST00000602239 COQ8AQ8NI60 647 aa11.21□□□□□ -0.61
SHKBP1-228ENST00000602239 PPP1R14BQ96C90 147 aa11.21□□□□□ -0.61
SHKBP1-228ENST00000602239 CLUHP3Q96NS8 147 aa11.21□□□□□ -0.61
SHKBP1-228ENST00000602239 TRGV9Q99603 122 aa11.21□□□□□ -0.61
SHKBP1-228ENST00000602239 DKK2Q9UBU2 259 aa11.21□□□□□ -0.61
SHKBP1-228ENST00000602239 PAIP2BQ9ULR5 123 aaKnown RBP11.21□□□□□ -0.61
SHKBP1-228ENST00000602239 RFNGQ9Y644 331 aa11.21□□□□□ -0.61
SHKBP1-228ENST00000602239 A0A0J9YX75 114 aa11.2□□□□□ -0.62
SHKBP1-228ENST00000602239 TMEM189A5PLL7 270 aa11.2□□□□□ -0.62
SHKBP1-228ENST00000602239 SRPXP78539 464 aa11.2□□□□□ -0.62
SHKBP1-228ENST00000602239 PSG9Q00887 426 aa11.2□□□□□ -0.62
SHKBP1-228ENST00000602239 THAP8Q8NA92 274 aa11.2□□□□□ -0.62
SHKBP1-228ENST00000602239 MAGT1Q9H0U3 335 aa11.2□□□□□ -0.62
SHKBP1-228ENST00000602239 DNAH17Q9UFH2 4485 aa11.19□□□□□ -0.62
SHKBP1-228ENST00000602239 PRSS29PA6NIE9 313 aa11.19□□□□□ -0.62
SHKBP1-228ENST00000602239 ISLRO14498 428 aa11.19□□□□□ -0.62
SHKBP1-228ENST00000602239 FABP1P07148 127 aa11.19□□□□□ -0.62
SHKBP1-228ENST00000602239 GATA2P23769 480 aaPredicted RBP11.19□□□□□ -0.62
SHKBP1-228ENST00000602239 PAX9P55771 341 aa11.19□□□□□ -0.62
SHKBP1-228ENST00000602239 RAB11AP62491 216 aa11.19□□□□□ -0.62
SHKBP1-228ENST00000602239 TMEM128Q5BJH2 165 aa11.19□□□□□ -0.62
SHKBP1-228ENST00000602239 NIPSNAP3BQ9BS92 247 aa11.19□□□□□ -0.62
SHKBP1-228ENST00000602239 SLC25A32Q9H2D1 315 aa11.19□□□□□ -0.62
SHKBP1-228ENST00000602239 IGLV2-18A0A075B6J9 118 aa11.18□□□□□ -0.62
SHKBP1-228ENST00000602239 PRSS46E5RG02 174 aa11.18□□□□□ -0.62
SHKBP1-228ENST00000602239 H3BMQ9 156 aa11.18□□□□□ -0.62
SHKBP1-228ENST00000602239 PRM2P04554 102 aa11.18□□□□□ -0.62
SHKBP1-228ENST00000602239 HTN3P15516 51 aa11.18□□□□□ -0.62
SHKBP1-228ENST00000602239 VAMP1P23763 118 aa11.18□□□□□ -0.62
SHKBP1-228ENST00000602239 EBLN2Q6P2I7 272 aa11.18□□□□□ -0.62
SHKBP1-228ENST00000602239 LRTM2Q8N967 370 aa11.18□□□□□ -0.62
SHKBP1-228ENST00000602239 MCFD2Q8NI22 146 aa11.18□□□□□ -0.62
SHKBP1-228ENST00000602239 TRIM63Q969Q1 353 aa11.18□□□□□ -0.62
SHKBP1-228ENST00000602239 C16orf92Q96LL3 132 aa11.18□□□□□ -0.62
SHKBP1-228ENST00000602239 BCL7BQ9BQE9 202 aa11.18□□□□□ -0.62
SHKBP1-228ENST00000602239 RSG1Q9BU20 258 aa11.18□□□□□ -0.62
SHKBP1-228ENST00000602239 SLC25A22Q9H936 323 aa11.18□□□□□ -0.62
SHKBP1-228ENST00000602239 YTHDF2Q9Y5A9 579 aaKnown RBP11.18□□□□□ -0.62
SHKBP1-228ENST00000602239 PCLOQ9Y6V0 5065 aa11.17□□□□□ -0.62
SHKBP1-228ENST00000602239 LOC102723971A0A1B0GUV8 181 aa11.17□□□□□ -0.62
SHKBP1-228ENST00000602239 DUXBA0A1W2PPF3 345 aa11.17□□□□□ -0.62
SHKBP1-228ENST00000602239 ZNF98A6NK75 572 aa11.17□□□□□ -0.62
SHKBP1-228ENST00000602239 WRBO00258 174 aa11.17□□□□□ -0.62
SHKBP1-228ENST00000602239 SLC25A6P12236 298 aa11.17□□□□□ -0.62
SHKBP1-228ENST00000602239 LGALS9BQ3B8N2 356 aa11.17□□□□□ -0.62
SHKBP1-228ENST00000602239 SPATA31B1PQ5VZV4 182 aa11.17□□□□□ -0.62
SHKBP1-228ENST00000602239 IGFL4Q6B9Z1 124 aa11.17□□□□□ -0.62
SHKBP1-228ENST00000602239 AMTNQ6UX39 209 aa11.17□□□□□ -0.62
SHKBP1-228ENST00000602239 C7orf50Q9BRJ6 194 aaKnown RBP11.17□□□□□ -0.62
SHKBP1-228ENST00000602239 RPRMQ9NS64 109 aa11.17□□□□□ -0.62
SHKBP1-228ENST00000602239 GOLT1BQ9Y3E0 138 aa11.17□□□□□ -0.62
SHKBP1-228ENST00000602239 PKHD1P08F94 4074 aa11.17□□□□□ -0.62
SHKBP1-228ENST00000602239 SYNGR2O43760 224 aa11.16□□□□□ -0.62
SHKBP1-228ENST00000602239 IFNA21P01568 189 aa11.16□□□□□ -0.62
SHKBP1-228ENST00000602239 HBE1P02100 147 aa11.16□□□□□ -0.62
SHKBP1-228ENST00000602239 HOXB5P09067 269 aa11.16□□□□□ -0.62
SHKBP1-228ENST00000602239 ORM2P19652 201 aa11.16□□□□□ -0.62
SHKBP1-228ENST00000602239 FAUP35544 74 aaKnown RBP11.16□□□□□ -0.62
SHKBP1-228ENST00000602239 PPP1R1AQ13522 171 aa11.16□□□□□ -0.62
SHKBP1-228ENST00000602239 PYDC2Q56P42 97 aa11.16□□□□□ -0.62
SHKBP1-228ENST00000602239 GGNBP1Q5YKI7 109 aa11.16□□□□□ -0.62
SHKBP1-228ENST00000602239 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.16□□□□□ -0.62
SHKBP1-228ENST00000602239 TOMM5Q8N4H5 51 aa11.16□□□□□ -0.62
SHKBP1-228ENST00000602239 FAM210BQ96KR6 192 aa11.16□□□□□ -0.62
SHKBP1-228ENST00000602239 DOK5Q9P104 306 aa11.16□□□□□ -0.62
SHKBP1-228ENST00000602239 PKD1P98161 4303 aa11.16□□□□□ -0.62
SHKBP1-228ENST00000602239 A8MTW9 85 aa11.15□□□□□ -0.62
SHKBP1-228ENST00000602239 MED6O75586 246 aa11.15□□□□□ -0.62
SHKBP1-228ENST00000602239 SFT2D2O95562 160 aa11.15□□□□□ -0.62
SHKBP1-228ENST00000602239 GALR1P47211 349 aa11.15□□□□□ -0.62
SHKBP1-228ENST00000602239 RRN3P1Q2M238 152 aa11.15□□□□□ -0.62
SHKBP1-228ENST00000602239 SPANXN5Q5MJ07 72 aa11.15□□□□□ -0.62
SHKBP1-228ENST00000602239 Q6ZR54 194 aa11.15□□□□□ -0.62
SHKBP1-228ENST00000602239 TMED3Q9Y3Q3 217 aa11.15□□□□□ -0.62
SHKBP1-228ENST00000602239 V9GYH0 126 aa11.15□□□□□ -0.62
SHKBP1-228ENST00000602239 TRAV8-2A0A0B4J237 113 aa11.14□□□□□ -0.63
SHKBP1-228ENST00000602239 PIGBOS1A0A0B4J2F0 54 aa11.14□□□□□ -0.63
SHKBP1-228ENST00000602239 ZNF705GA8MUZ8 300 aaPredicted RBP11.14□□□□□ -0.63
SHKBP1-228ENST00000602239 H3BP45 60 aa11.14□□□□□ -0.63
SHKBP1-228ENST00000602239 MEOX2P50222 304 aa11.14□□□□□ -0.63
SHKBP1-228ENST00000602239 OXA1LQ15070 435 aa11.14□□□□□ -0.63
SHKBP1-228ENST00000602239 TMEM88Q6PEY1 159 aa11.14□□□□□ -0.63
SHKBP1-228ENST00000602239 UBE2DNLQ8IWF7 75 aa11.14□□□□□ -0.63
SHKBP1-228ENST00000602239 OR1B1Q8NGR6 318 aa11.14□□□□□ -0.63
SHKBP1-228ENST00000602239 IGF2BP2-AS1Q96M15 143 aa11.14□□□□□ -0.63
SHKBP1-228ENST00000602239 CIB3Q96Q77 187 aaPredicted RBP11.14□□□□□ -0.63
SHKBP1-228ENST00000602239 SLC25A21Q9BQT8 299 aaPredicted RBP11.14□□□□□ -0.63
SHKBP1-228ENST00000602239 SLC45A2Q9UMX9 530 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms