RNA–Protein interactions for RNA: ENST00000602029.1

VRK3-226, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 578 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-226ENST00000602029 CSN3P07498 182 aa3.94□□□□□ -1.78
VRK3-226ENST00000602029 CD7P09564 240 aa3.94□□□□□ -1.78
VRK3-226ENST00000602029 EGR2P11161 476 aaPredicted RBP3.94□□□□□ -1.78
VRK3-226ENST00000602029 MEOX2P50222 304 aa3.94□□□□□ -1.78
VRK3-226ENST00000602029 SLC38A11Q08AI6 406 aa3.94□□□□□ -1.78
VRK3-226ENST00000602029 KLF5Q13887 457 aaPredicted RBP3.94□□□□□ -1.78
VRK3-226ENST00000602029 ICAM4Q14773 271 aa3.94□□□□□ -1.78
VRK3-226ENST00000602029 ZNF585BQ52M93 769 aa3.94□□□□□ -1.78
VRK3-226ENST00000602029 FAM71F2Q6NXP2 309 aa3.94□□□□□ -1.78
VRK3-226ENST00000602029 CYP2G1PQ6ZSU1 146 aa3.94□□□□□ -1.78
VRK3-226ENST00000602029 SSX9Q7RTT3 188 aa3.94□□□□□ -1.78
VRK3-226ENST00000602029 PDPNQ86YL7 162 aa3.94□□□□□ -1.78
VRK3-226ENST00000602029 OR10P1Q8NGE3 313 aa3.94□□□□□ -1.78
VRK3-226ENST00000602029 LINC00476Q8WZB0 136 aa3.94□□□□□ -1.78
VRK3-226ENST00000602029 USMG5Q96IX5 58 aa3.94□□□□□ -1.78
VRK3-226ENST00000602029 YPEL4Q96NS1 127 aa3.94□□□□□ -1.78
VRK3-226ENST00000602029 C12orf57Q99622 126 aa3.94□□□□□ -1.78
VRK3-226ENST00000602029 RNF5Q99942 180 aa3.94□□□□□ -1.78
VRK3-226ENST00000602029 PARP12Q9H0J9 701 aaKnown RBP3.94□□□□□ -1.78
VRK3-226ENST00000602029 OR2D2Q9H210 308 aa3.94□□□□□ -1.78
VRK3-226ENST00000602029 TMPRSS5Q9H3S3 457 aa3.94□□□□□ -1.78
VRK3-226ENST00000602029 SAV1Q9H4B6 383 aaPredicted RBP3.94□□□□□ -1.78
VRK3-226ENST00000602029 CACNG5Q9UF02 275 aa3.94□□□□□ -1.78
VRK3-226ENST00000602029 KLK5Q9Y337 293 aaPredicted RBP3.94□□□□□ -1.78
VRK3-226ENST00000602029 HSPG2P98160 4391 aa3.94□□□□□ -1.78
VRK3-226ENST00000602029 DNAH11Q96DT5 4516 aa3.93□□□□□ -1.78
VRK3-226ENST00000602029 TRAV9-1A0A075B6T8 112 aa3.93□□□□□ -1.78
VRK3-226ENST00000602029 A0A0J9YWU9 116 aa3.93□□□□□ -1.78
VRK3-226ENST00000602029 MAP1LC3B2A6NCE7 125 aa3.93□□□□□ -1.78
VRK3-226ENST00000602029 C9JQL5 133 aa3.93□□□□□ -1.78
VRK3-226ENST00000602029 PPP5D1E7EU14 171 aa3.93□□□□□ -1.78
VRK3-226ENST00000602029 AGPAT2O15120 278 aa3.93□□□□□ -1.78
VRK3-226ENST00000602029 CYB5BO43169 146 aa3.93□□□□□ -1.78
VRK3-226ENST00000602029 OR2J3O76001 311 aa3.93□□□□□ -1.78
VRK3-226ENST00000602029 TMEM50AO95807 157 aa3.93□□□□□ -1.78
VRK3-226ENST00000602029 IGKV1-39P01597 117 aa3.93□□□□□ -1.78
VRK3-226ENST00000602029 IGHV3-23P01764 117 aa3.93□□□□□ -1.78
VRK3-226ENST00000602029 IGKV1D-39P04432 117 aa3.93□□□□□ -1.78
VRK3-226ENST00000602029 OR9G9P0C7N8 305 aa3.93□□□□□ -1.78
VRK3-226ENST00000602029 DEFA4P12838 97 aa3.93□□□□□ -1.78
VRK3-226ENST00000602029 CRIP2P52943 208 aaPredicted RBP3.93□□□□□ -1.78
VRK3-226ENST00000602029 LINC00205P59089 165 aa3.93□□□□□ -1.78
VRK3-226ENST00000602029 OR2B8PP59922 312 aa3.93□□□□□ -1.78
VRK3-226ENST00000602029 SPCS3P61009 180 aa3.93□□□□□ -1.78
VRK3-226ENST00000602029 CTAG1AP78358 180 aa3.93□□□□□ -1.78
VRK3-226ENST00000602029 MEF2BQ02080 365 aaPredicted RBP3.93□□□□□ -1.78
VRK3-226ENST00000602029 POU2AF1Q16633 256 aa3.93□□□□□ -1.78
VRK3-226ENST00000602029 OR2B11Q5JQS5 317 aa3.93□□□□□ -1.78
VRK3-226ENST00000602029 RBPMS2Q6ZRY4 209 aaKnown RBP3.93□□□□□ -1.78
VRK3-226ENST00000602029 H2BFWTQ7Z2G1 175 aa3.93□□□□□ -1.78
VRK3-226ENST00000602029 ZNF709Q8N972 641 aa3.93□□□□□ -1.78
VRK3-226ENST00000602029 OR5AN1Q8NGI8 311 aa3.93□□□□□ -1.78
VRK3-226ENST00000602029 OR2K2Q8NGT1 345 aa3.93□□□□□ -1.78
VRK3-226ENST00000602029 DTD1Q8TEA8 209 aa3.93□□□□□ -1.78
VRK3-226ENST00000602029 ANAPC16Q96DE5 110 aa3.93□□□□□ -1.78
VRK3-226ENST00000602029 CYYR1Q96J86 154 aa3.93□□□□□ -1.78
VRK3-226ENST00000602029 TMEM68Q96MH6 324 aa3.93□□□□□ -1.78
VRK3-226ENST00000602029 IMMP2LQ96T52 175 aa3.93□□□□□ -1.78
VRK3-226ENST00000602029 GGTLC1Q9BX51 225 aa3.93□□□□□ -1.78
VRK3-226ENST00000602029 ACTR3CQ9C0K3 210 aaPredicted RBP3.93□□□□□ -1.78
VRK3-226ENST00000602029 MAP1LC3BQ9GZQ8 125 aa3.93□□□□□ -1.78
VRK3-226ENST00000602029 RPRMQ9NS64 109 aa3.93□□□□□ -1.78
VRK3-226ENST00000602029 NAT8Q9UHE5 227 aa3.93□□□□□ -1.78
VRK3-226ENST00000602029 S4R3C0 116 aa3.93□□□□□ -1.78
VRK3-226ENST00000602029 FAT2Q9NYQ8 4349 aa3.93□□□□□ -1.78
VRK3-226ENST00000602029 DNAH17Q9UFH2 4485 aa3.92□□□□□ -1.78
VRK3-226ENST00000602029 LOC102724200A0A096LPH7 203 aaPredicted RBP3.92□□□□□ -1.78
VRK3-226ENST00000602029 A0A0G2JRQ6 117 aa3.92□□□□□ -1.78
VRK3-226ENST00000602029 FAM223BA6NKX1 122 aa3.92□□□□□ -1.78
VRK3-226ENST00000602029 MARCH11A6NNE9 402 aa3.92□□□□□ -1.78
VRK3-226ENST00000602029 F6UZH7 168 aa3.92□□□□□ -1.78
VRK3-226ENST00000602029 BMPR1BO00238 502 aa3.92□□□□□ -1.78
VRK3-226ENST00000602029 PPP1R2P9O14990 202 aa3.92□□□□□ -1.78
VRK3-226ENST00000602029 GGCTO75223 188 aaKnown RBP3.92□□□□□ -1.78
VRK3-226ENST00000602029 KBTBD11O94819 623 aa3.92□□□□□ -1.78
VRK3-226ENST00000602029 NDUFB8O95169 186 aa3.92□□□□□ -1.78
VRK3-226ENST00000602029 OR13C7P0DN81 318 aa3.92□□□□□ -1.78
VRK3-226ENST00000602029 NQO2P16083 231 aa3.92□□□□□ -1.78
VRK3-226ENST00000602029 S100PP25815 95 aa3.92□□□□□ -1.78
VRK3-226ENST00000602029 ARL3P36405 182 aa3.92□□□□□ -1.78
VRK3-226ENST00000602029 FHITP49789 147 aa3.92□□□□□ -1.78
VRK3-226ENST00000602029 AKR1D1P51857 326 aa3.92□□□□□ -1.78
VRK3-226ENST00000602029 APOC4P55056 127 aa3.92□□□□□ -1.78
VRK3-226ENST00000602029 ERVK-16P61578 105 aa3.92□□□□□ -1.78
VRK3-226ENST00000602029 RAB11AP62491 216 aa3.92□□□□□ -1.78
VRK3-226ENST00000602029 DLK1P80370 383 aa3.92□□□□□ -1.78
VRK3-226ENST00000602029 ELOBQ15370 118 aa3.92□□□□□ -1.78
VRK3-226ENST00000602029 DEFB135Q30KP9 77 aa3.92□□□□□ -1.78
VRK3-226ENST00000602029 C15orf32Q32M92 178 aa3.92□□□□□ -1.78
VRK3-226ENST00000602029 ACOT6Q3I5F7 207 aaPredicted RBP3.92□□□□□ -1.78
VRK3-226ENST00000602029 FAM106AQ4KMX7 169 aa3.92□□□□□ -1.78
VRK3-226ENST00000602029 C19orf54Q5BKX5 351 aa3.92□□□□□ -1.78
VRK3-226ENST00000602029 FAM90A2PQ658T7 463 aa3.92□□□□□ -1.78
VRK3-226ENST00000602029 ZNF343Q6P1L6 599 aa3.92□□□□□ -1.78
VRK3-226ENST00000602029 FAM223AQ8IWN6 122 aa3.92□□□□□ -1.78
VRK3-226ENST00000602029 TMEM217Q8N7C4 229 aa3.92□□□□□ -1.78
VRK3-226ENST00000602029 CYB561D1Q8N8Q1 229 aa3.92□□□□□ -1.78
VRK3-226ENST00000602029 ZNF383Q8NA42 475 aa3.92□□□□□ -1.78
VRK3-226ENST00000602029 OR4S2Q8NH73 311 aa3.92□□□□□ -1.78
VRK3-226ENST00000602029 SRSF12Q8WXF0 261 aaKnown RBP3.92□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms