RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 UHRF2Q96PU4 802 aa11.26□□□□□ -0.61
VRK3-212ENST00000596814 FUT9Q9Y231 359 aa11.26□□□□□ -0.61
VRK3-212ENST00000596814 EIF3GO75821 320 aaKnown RBP eCLIP11.25□□□□□ -0.61
VRK3-212ENST00000596814 H2AFB1P0C5Y9 115 aa11.25□□□□□ -0.61
VRK3-212ENST00000596814 KRTAP10-3P60369 221 aa11.25□□□□□ -0.61
VRK3-212ENST00000596814 AWAT1Q58HT5 328 aa11.25□□□□□ -0.61
VRK3-212ENST00000596814 SPATA31B1PQ5VZV4 182 aa11.25□□□□□ -0.61
VRK3-212ENST00000596814 C8orf86Q6ZUL3 223 aa11.25□□□□□ -0.61
VRK3-212ENST00000596814 MIR17HGQ75NE6 70 aa11.25□□□□□ -0.61
VRK3-212ENST00000596814 LINC00305Q7Z4B0 112 aa11.25□□□□□ -0.61
VRK3-212ENST00000596814 TMEM190Q8WZ59 177 aa11.25□□□□□ -0.61
VRK3-212ENST00000596814 RAB24Q969Q5 203 aa11.25□□□□□ -0.61
VRK3-212ENST00000596814 C20orf24Q9BUV8 137 aa11.25□□□□□ -0.61
VRK3-212ENST00000596814 MRPL27Q9P0M9 148 aaKnown RBP11.25□□□□□ -0.61
VRK3-212ENST00000596814 RABAC1Q9UI14 185 aa11.25□□□□□ -0.61
VRK3-212ENST00000596814 MAP1LC3B2A6NCE7 125 aa11.24□□□□□ -0.61
VRK3-212ENST00000596814 LINC01619G3V211 115 aa11.24□□□□□ -0.61
VRK3-212ENST00000596814 HMGB3O15347 200 aaKnown RBP11.24□□□□□ -0.61
VRK3-212ENST00000596814 ZP3P21754 424 aa11.24□□□□□ -0.61
VRK3-212ENST00000596814 FAM106AQ4KMX7 169 aa11.24□□□□□ -0.61
VRK3-212ENST00000596814 LCN15Q6UWW0 184 aa11.24□□□□□ -0.61
VRK3-212ENST00000596814 UNQ9165/PRO28630Q6UXU0 137 aa11.24□□□□□ -0.61
VRK3-212ENST00000596814 S100A7AQ86SG5 101 aa11.24□□□□□ -0.61
VRK3-212ENST00000596814 GPHB5Q86YW7 130 aa11.24□□□□□ -0.61
VRK3-212ENST00000596814 OR11H1Q8NG94 326 aa11.24□□□□□ -0.61
VRK3-212ENST00000596814 SFT2D1Q8WV19 159 aa11.24□□□□□ -0.61
VRK3-212ENST00000596814 DPF1Q92782 380 aa11.24□□□□□ -0.61
VRK3-212ENST00000596814 SLC25A39Q9BZJ4 359 aaPredicted RBP11.24□□□□□ -0.61
VRK3-212ENST00000596814 MAP1LC3BQ9GZQ8 125 aa11.24□□□□□ -0.61
VRK3-212ENST00000596814 H3BRN7 92 aa11.23□□□□□ -0.61
VRK3-212ENST00000596814 HOXD3P31249 432 aaPredicted RBP11.23□□□□□ -0.61
VRK3-212ENST00000596814 MORN5Q5VZ52 161 aa11.23□□□□□ -0.61
VRK3-212ENST00000596814 OR1N2Q8NGR9 330 aa11.23□□□□□ -0.61
VRK3-212ENST00000596814 MBD3L1Q8WWY6 194 aa11.23□□□□□ -0.61
VRK3-212ENST00000596814 METTL26Q96S19 204 aa11.23□□□□□ -0.61
VRK3-212ENST00000596814 A0A1B0GV50 99 aa11.23□□□□□ -0.61
VRK3-212ENST00000596814 TEX46H3BTG2 121 aa11.23□□□□□ -0.61
VRK3-212ENST00000596814 HBE1P02100 147 aa11.23□□□□□ -0.61
VRK3-212ENST00000596814 S100A7P31151 101 aa11.23□□□□□ -0.61
VRK3-212ENST00000596814 FGF8P55075 233 aaPredicted RBP11.23□□□□□ -0.61
VRK3-212ENST00000596814 TAS2R45P59539 299 aa11.23□□□□□ -0.61
VRK3-212ENST00000596814 KHDC3LQ587J8 217 aa11.23□□□□□ -0.61
VRK3-212ENST00000596814 SHANK2-AS3Q9BTD1 123 aa11.23□□□□□ -0.61
VRK3-212ENST00000596814 SCRT1Q9BWW7 348 aa11.23□□□□□ -0.61
VRK3-212ENST00000596814 HRH4Q9H3N8 390 aa11.23□□□□□ -0.61
VRK3-212ENST00000596814 TECRQ9NZ01 308 aaKnown RBP11.23□□□□□ -0.61
VRK3-212ENST00000596814 ATRQ13535 2644 aa11.23□□□□□ -0.61
VRK3-212ENST00000596814 ZNF320A2RRD8 509 aa11.22□□□□□ -0.61
VRK3-212ENST00000596814 ZNF207O43670 478 aaKnown RBP11.22□□□□□ -0.61
VRK3-212ENST00000596814 STAG3L2P0CL84 134 aa11.22□□□□□ -0.61
VRK3-212ENST00000596814 STAG3L3P0CL85 134 aa11.22□□□□□ -0.61
VRK3-212ENST00000596814 C8orf88P0DMB2 117 aa11.22□□□□□ -0.61
VRK3-212ENST00000596814 NDUFA11Q86Y39 141 aa11.22□□□□□ -0.61
VRK3-212ENST00000596814 DUX3Q96PT4 197 aa11.22□□□□□ -0.61
VRK3-212ENST00000596814 TRAV1-1A0A0B4J248 108 aa11.21□□□□□ -0.61
VRK3-212ENST00000596814 TRAV5A0A0B4J249 113 aa11.21□□□□□ -0.61
VRK3-212ENST00000596814 ADARB2-AS1A8MUL3 147 aa11.21□□□□□ -0.61
VRK3-212ENST00000596814 ARL14EPLP0DKL9 152 aa11.21□□□□□ -0.61
VRK3-212ENST00000596814 SLURP1P55000 103 aa11.21□□□□□ -0.61
VRK3-212ENST00000596814 NSUN5P1Q3KNT7 163 aa11.21□□□□□ -0.61
VRK3-212ENST00000596814 REC114Q7Z4M0 266 aa11.21□□□□□ -0.61
VRK3-212ENST00000596814 LYPD6BQ8NI32 183 aa11.21□□□□□ -0.61
VRK3-212ENST00000596814 RAX2Q96IS3 184 aa11.21□□□□□ -0.61
VRK3-212ENST00000596814 SLC25A2Q9BXI2 301 aa11.21□□□□□ -0.61
VRK3-212ENST00000596814 PFDN2Q9UHV9 154 aa11.21□□□□□ -0.61
VRK3-212ENST00000596814 ZNF98A6NK75 572 aa11.21□□□□□ -0.62
VRK3-212ENST00000596814 OR7C2O60412 319 aa11.21□□□□□ -0.62
VRK3-212ENST00000596814 CXorf1O96002 111 aa11.21□□□□□ -0.62
VRK3-212ENST00000596814 NPPCP23582 126 aa11.21□□□□□ -0.62
VRK3-212ENST00000596814 CRYBB3P26998 211 aa11.21□□□□□ -0.62
VRK3-212ENST00000596814 SYNJ2BPP57105 145 aa11.21□□□□□ -0.62
VRK3-212ENST00000596814 FHL3Q13643 280 aa11.21□□□□□ -0.62
VRK3-212ENST00000596814 LEMD1Q68G75 181 aa11.21□□□□□ -0.62
VRK3-212ENST00000596814 PQLC2Q6ZP29 291 aa11.21□□□□□ -0.62
VRK3-212ENST00000596814 C1QL4Q86Z23 238 aa11.21□□□□□ -0.62
VRK3-212ENST00000596814 IQCF2Q8IXL9 164 aa11.21□□□□□ -0.62
VRK3-212ENST00000596814 FAM167A-AS1Q96KT0 104 aa11.21□□□□□ -0.62
VRK3-212ENST00000596814 DAZ1Q9NQZ3 744 aaKnown RBP11.21□□□□□ -0.62
VRK3-212ENST00000596814 RNF24Q9Y225 148 aa11.21□□□□□ -0.62
VRK3-212ENST00000596814 UFC1Q9Y3C8 167 aa11.21□□□□□ -0.62
VRK3-212ENST00000596814 CCL24O00175 119 aa11.2□□□□□ -0.62
VRK3-212ENST00000596814 LGALS9O00182 355 aa11.2□□□□□ -0.62
VRK3-212ENST00000596814 NARS2Q96I59 477 aaKnown RBP11.2□□□□□ -0.62
VRK3-212ENST00000596814 A8MWP6 167 aa11.19□□□□□ -0.62
VRK3-212ENST00000596814 K7EMT4 169 aa11.19□□□□□ -0.62
VRK3-212ENST00000596814 KLF5Q13887 457 aaPredicted RBP11.19□□□□□ -0.62
VRK3-212ENST00000596814 IL34Q6ZMJ4 242 aa11.19□□□□□ -0.62
VRK3-212ENST00000596814 CITED1Q99966 193 aa11.19□□□□□ -0.62
VRK3-212ENST00000596814 IGHV3-49A0A0A0MS15 119 aa11.18□□□□□ -0.62
VRK3-212ENST00000596814 TM4SF20Q53R12 229 aa11.18□□□□□ -0.62
VRK3-212ENST00000596814 STXBP6Q8NFX7 210 aa11.18□□□□□ -0.62
VRK3-212ENST00000596814 TMEM158Q8WZ71 300 aa11.18□□□□□ -0.62
VRK3-212ENST00000596814 ZNF503Q96F45 646 aa11.18□□□□□ -0.62
VRK3-212ENST00000596814 PAXXQ9BUH6 204 aa11.18□□□□□ -0.62
VRK3-212ENST00000596814 OR51M1Q9H341 326 aa11.18□□□□□ -0.62
VRK3-212ENST00000596814 U3KQE9 123 aa11.18□□□□□ -0.62
VRK3-212ENST00000596814 TMEM213A2RRL7 107 aa11.18□□□□□ -0.62
VRK3-212ENST00000596814 BUB3O43684 328 aa11.18□□□□□ -0.62
VRK3-212ENST00000596814 APOHP02749 345 aaPredicted RBP11.18□□□□□ -0.62
VRK3-212ENST00000596814 PYYP10082 97 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms