RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 S100A11P31949 105 aa12.84□□□□□ -0.35
SHKBP1-212ENST00000596163 SLC38A11Q08AI6 406 aa12.84□□□□□ -0.35
SHKBP1-212ENST00000596163 RAB31Q13636 194 aa12.84□□□□□ -0.35
SHKBP1-212ENST00000596163 WWC2-AS2Q96NR7 200 aa12.84□□□□□ -0.35
SHKBP1-212ENST00000596163 TMEM147Q9BVK8 224 aa12.84□□□□□ -0.35
SHKBP1-212ENST00000596163 MAP6D1Q9H9H5 199 aa12.84□□□□□ -0.35
SHKBP1-212ENST00000596163 UBE2CO00762 179 aa12.83□□□□□ -0.36
SHKBP1-212ENST00000596163 CST7O76096 145 aa12.83□□□□□ -0.36
SHKBP1-212ENST00000596163 ARL16Q0P5N6 197 aa12.83□□□□□ -0.36
SHKBP1-212ENST00000596163 ATP6V1FQ16864 119 aa12.83□□□□□ -0.36
SHKBP1-212ENST00000596163 TMEM252Q8N6L7 170 aa12.83□□□□□ -0.36
SHKBP1-212ENST00000596163 OR1B1Q8NGR6 318 aa12.83□□□□□ -0.36
SHKBP1-212ENST00000596163 CITED4Q96RK1 184 aa12.83□□□□□ -0.36
SHKBP1-212ENST00000596163 SLC25A31Q9H0C2 315 aa12.83□□□□□ -0.36
SHKBP1-212ENST00000596163 SEPSECSQ9HD40 501 aaKnown RBP12.83□□□□□ -0.36
SHKBP1-212ENST00000596163 NRN1Q9NPD7 142 aa12.83□□□□□ -0.36
SHKBP1-212ENST00000596163 RNF24Q9Y225 148 aa12.83□□□□□ -0.36
SHKBP1-212ENST00000596163 KIR2DL5BA0A0G2JN68 375 aa12.82□□□□□ -0.36
SHKBP1-212ENST00000596163 KIR2DL5BA0A0G2JPC4 375 aa12.82□□□□□ -0.36
SHKBP1-212ENST00000596163 PET100P0DJ07 73 aa12.82□□□□□ -0.36
SHKBP1-212ENST00000596163 GATA2P23769 480 aaPredicted RBP12.82□□□□□ -0.36
SHKBP1-212ENST00000596163 DEFB131AP59861 70 aa12.82□□□□□ -0.36
SHKBP1-212ENST00000596163 RAP2BP61225 183 aa12.82□□□□□ -0.36
SHKBP1-212ENST00000596163 PXDC1Q5TGL8 231 aa12.82□□□□□ -0.36
SHKBP1-212ENST00000596163 ZNF546Q86UE3 836 aa12.82□□□□□ -0.36
SHKBP1-212ENST00000596163 APRG1Q8IVJ8 170 aa12.82□□□□□ -0.36
SHKBP1-212ENST00000596163 OR8I2Q8N0Y5 310 aa12.82□□□□□ -0.36
SHKBP1-212ENST00000596163 KIR2DL5AQ8N109 375 aa12.82□□□□□ -0.36
SHKBP1-212ENST00000596163 TMEM217Q8N7C4 229 aa12.82□□□□□ -0.36
SHKBP1-212ENST00000596163 STPG3Q8N7X2 389 aa12.82□□□□□ -0.36
SHKBP1-212ENST00000596163 KIR2DL5BQ8NHK3 375 aa12.82□□□□□ -0.36
SHKBP1-212ENST00000596163 DCANP1Q8TF63 244 aa12.82□□□□□ -0.36
SHKBP1-212ENST00000596163 GPR82Q96P67 336 aa12.82□□□□□ -0.36
SHKBP1-212ENST00000596163 UQCC1Q9NVA1 299 aa12.82□□□□□ -0.36
SHKBP1-212ENST00000596163 HYPMO75409 117 aa12.81□□□□□ -0.36
SHKBP1-212ENST00000596163 LINC00869P0C866 280 aa12.81□□□□□ -0.36
SHKBP1-212ENST00000596163 PLP1P60201 277 aa12.81□□□□□ -0.36
SHKBP1-212ENST00000596163 SNRPD3P62318 126 aaKnown RBP12.81□□□□□ -0.36
SHKBP1-212ENST00000596163 LRRC37A5PQ49AS3 106 aa12.81□□□□□ -0.36
SHKBP1-212ENST00000596163 TMEM182Q6ZP80 229 aaPredicted RBP12.81□□□□□ -0.36
SHKBP1-212ENST00000596163 HIGD1AQ9Y241 93 aa12.81□□□□□ -0.36
SHKBP1-212ENST00000596163 ALG5Q9Y673 324 aa12.81□□□□□ -0.36
SHKBP1-212ENST00000596163 IGSF23A1L1A6 192 aa12.8□□□□□ -0.36
SHKBP1-212ENST00000596163 AGPAT2O15120 278 aa12.8□□□□□ -0.36
SHKBP1-212ENST00000596163 ID1P41134 155 aa12.8□□□□□ -0.36
SHKBP1-212ENST00000596163 GALR1P47211 349 aa12.8□□□□□ -0.36
SHKBP1-212ENST00000596163 H2BFSP57053 126 aa12.8□□□□□ -0.36
SHKBP1-212ENST00000596163 SAMD13Q5VXD3 122 aa12.8□□□□□ -0.36
SHKBP1-212ENST00000596163 PPP1R1CQ8WVI7 109 aa12.8□□□□□ -0.36
SHKBP1-212ENST00000596163 ZNF98A6NK75 572 aa12.79□□□□□ -0.36
SHKBP1-212ENST00000596163 OR5G3P0C626 314 aa12.79□□□□□ -0.36
SHKBP1-212ENST00000596163 ZNF688P0C7X2 276 aa12.79□□□□□ -0.36
SHKBP1-212ENST00000596163 RPL35AP18077 110 aaKnown RBP12.79□□□□□ -0.36
SHKBP1-212ENST00000596163 CAMLGP49069 296 aa12.79□□□□□ -0.36
SHKBP1-212ENST00000596163 RGS21Q2M5E4 152 aa12.79□□□□□ -0.36
SHKBP1-212ENST00000596163 FAM24BQ8N5W8 94 aa12.79□□□□□ -0.36
SHKBP1-212ENST00000596163 MED28Q9H204 178 aa12.79□□□□□ -0.36
SHKBP1-212ENST00000596163 MEOX2P50222 304 aa12.78□□□□□ -0.36
SHKBP1-212ENST00000596163 BAXQ07812 192 aa12.78□□□□□ -0.36
SHKBP1-212ENST00000596163 VWC2Q2TAL6 325 aa12.78□□□□□ -0.36
SHKBP1-212ENST00000596163 LEMD1Q68G75 181 aa12.78□□□□□ -0.36
SHKBP1-212ENST00000596163 Q6ZRG5 221 aa12.78□□□□□ -0.36
SHKBP1-212ENST00000596163 Q6ZWC4 215 aa12.78□□□□□ -0.36
SHKBP1-212ENST00000596163 STHQ8IWL8 128 aa12.78□□□□□ -0.36
SHKBP1-212ENST00000596163 SLC25A39Q9BZJ4 359 aaPredicted RBP12.78□□□□□ -0.36
SHKBP1-212ENST00000596163 ARL6Q9H0F7 186 aa12.78□□□□□ -0.36
SHKBP1-212ENST00000596163 CSTL1Q9H114 145 aa12.78□□□□□ -0.36
SHKBP1-212ENST00000596163 SLC25A22Q9H936 323 aa12.78□□□□□ -0.36
SHKBP1-212ENST00000596163 OR5AC2Q9NZP5 309 aa12.78□□□□□ -0.36
SHKBP1-212ENST00000596163 DOK5Q9P104 306 aa12.78□□□□□ -0.36
SHKBP1-212ENST00000596163 WDR83OSQ9Y284 106 aa12.78□□□□□ -0.36
SHKBP1-212ENST00000596163 MPDU1O75352 247 aa12.77□□□□□ -0.37
SHKBP1-212ENST00000596163 MPC2O95563 127 aa12.77□□□□□ -0.37
SHKBP1-212ENST00000596163 ZNF124Q15973 351 aa12.77□□□□□ -0.37
SHKBP1-212ENST00000596163 PSMG4Q5JS54 123 aa12.77□□□□□ -0.37
SHKBP1-212ENST00000596163 MGST2Q99735 147 aa12.77□□□□□ -0.37
SHKBP1-212ENST00000596163 SHANK2-AS3Q9BTD1 123 aa12.77□□□□□ -0.37
SHKBP1-212ENST00000596163 TP53TG1Q9Y2A0 90 aa12.77□□□□□ -0.37
SHKBP1-212ENST00000596163 COL7A1Q02388 2944 aa12.77□□□□□ -0.37
SHKBP1-212ENST00000596163 ELOA3CA0A087WX78 387 aaPredicted RBP12.76□□□□□ -0.37
SHKBP1-212ENST00000596163 H0YIZ8 118 aa12.76□□□□□ -0.37
SHKBP1-212ENST00000596163 H3BRN7 92 aa12.76□□□□□ -0.37
SHKBP1-212ENST00000596163 RPL7P18124 248 aaKnown RBP12.76□□□□□ -0.37
SHKBP1-212ENST00000596163 EWSR1Q01844 656 aaKnown RBP eCLIP12.76□□□□□ -0.37
SHKBP1-212ENST00000596163 ARV1Q9H2C2 271 aa12.76□□□□□ -0.37
SHKBP1-212ENST00000596163 UBE2L5PA0A1B0GUS4 154 aa12.75□□□□□ -0.37
SHKBP1-212ENST00000596163 COX7A2P2O60397 106 aa12.75□□□□□ -0.37
SHKBP1-212ENST00000596163 PSMB3P49720 205 aa12.75□□□□□ -0.37
SHKBP1-212ENST00000596163 NHLH2Q02577 135 aa12.75□□□□□ -0.37
SHKBP1-212ENST00000596163 OR5C1Q8NGR4 320 aa12.75□□□□□ -0.37
SHKBP1-212ENST00000596163 CHAC2Q8WUX2 184 aa12.75□□□□□ -0.37
SHKBP1-212ENST00000596163 RSG1Q9BU20 258 aa12.75□□□□□ -0.37
SHKBP1-212ENST00000596163 RNF126Q9BV68 326 aa12.75□□□□□ -0.37
SHKBP1-212ENST00000596163 SLC25A32Q9H2D1 315 aa12.75□□□□□ -0.37
SHKBP1-212ENST00000596163 RETNQ9HD89 108 aa12.75□□□□□ -0.37
SHKBP1-212ENST00000596163 ISLRO14498 428 aa12.74□□□□□ -0.37
SHKBP1-212ENST00000596163 SPRY2O43597 315 aa12.74□□□□□ -0.37
SHKBP1-212ENST00000596163 ATF4P18848 351 aaPredicted RBP12.74□□□□□ -0.37
SHKBP1-212ENST00000596163 FGF7P21781 194 aa12.74□□□□□ -0.37
SHKBP1-212ENST00000596163 RPL29P47914 159 aaKnown RBP12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 198.5 ms