RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 OR5AC1P0C628 307 aa3.73□□□□□ -1.81
VPS53-219ENST00000576019 IL1RNP18510 177 aa3.73□□□□□ -1.81
VPS53-219ENST00000576019 CDK2P24941 298 aa3.73□□□□□ -1.81
VPS53-219ENST00000576019 CD34P28906 385 aa3.73□□□□□ -1.81
VPS53-219ENST00000576019 OR10J1P30954 320 aa3.73□□□□□ -1.81
VPS53-219ENST00000576019 MPIP34949 423 aa3.73□□□□□ -1.81
VPS53-219ENST00000576019 NDPQ00604 133 aa3.73□□□□□ -1.81
VPS53-219ENST00000576019 FABP9Q0Z7S8 132 aa3.73□□□□□ -1.81
VPS53-219ENST00000576019 IAH1Q2TAA2 248 aaPredicted RBP3.73□□□□□ -1.81
VPS53-219ENST00000576019 BAP18Q8IXM2 172 aa3.73□□□□□ -1.81
VPS53-219ENST00000576019 ANKRD29Q8N6D5 301 aa3.73□□□□□ -1.81
VPS53-219ENST00000576019 KRTCAP2Q8N6L1 136 aa3.73□□□□□ -1.81
VPS53-219ENST00000576019 OR52L1Q8NGH7 329 aa3.73□□□□□ -1.81
VPS53-219ENST00000576019 TSLPQ969D9 159 aa3.73□□□□□ -1.81
VPS53-219ENST00000576019 ZHX1-C8orf76Q96EF9 292 aa3.73□□□□□ -1.81
VPS53-219ENST00000576019 L3HYPDHQ96EM0 354 aa3.73□□□□□ -1.81
VPS53-219ENST00000576019 PHYHIPLQ96FC7 376 aa3.73□□□□□ -1.81
VPS53-219ENST00000576019 TRIB3Q96RU7 358 aa3.73□□□□□ -1.81
VPS53-219ENST00000576019 NDFIP1Q9BT67 221 aa3.73□□□□□ -1.81
VPS53-219ENST00000576019 C6orf62Q9GZU0 229 aaPredicted RBP3.73□□□□□ -1.81
VPS53-219ENST00000576019 PROK2Q9HC23 129 aa3.73□□□□□ -1.81
VPS53-219ENST00000576019 KCNIP2Q9NS61 270 aa3.73□□□□□ -1.81
VPS53-219ENST00000576019 COQ4Q9Y3A0 265 aa3.73□□□□□ -1.81
VPS53-219ENST00000576019 SOX21Q9Y651 276 aaPredicted RBP3.73□□□□□ -1.81
VPS53-219ENST00000576019 IGKV1-12A0A0C4DH73 117 aa3.72□□□□□ -1.81
VPS53-219ENST00000576019 hADV38S2A0JD32 116 aa3.72□□□□□ -1.81
VPS53-219ENST00000576019 OR4C45A6NMZ5 311 aa3.72□□□□□ -1.81
VPS53-219ENST00000576019 PANO1I0J062 215 aa3.72□□□□□ -1.81
VPS53-219ENST00000576019 GPR75O95800 540 aa3.72□□□□□ -1.81
VPS53-219ENST00000576019 NRASP01111 189 aa3.72□□□□□ -1.81
VPS53-219ENST00000576019 HRASP01112 189 aa3.72□□□□□ -1.81
VPS53-219ENST00000576019 KRASP01116 189 aa3.72□□□□□ -1.81
VPS53-219ENST00000576019 IGKV1D-12P01611 117 aa3.72□□□□□ -1.81
VPS53-219ENST00000576019 C1QAP02745 245 aa3.72□□□□□ -1.81
VPS53-219ENST00000576019 ZNF19P17023 458 aa3.72□□□□□ -1.81
VPS53-219ENST00000576019 ELK1P19419 428 aa3.72□□□□□ -1.81
VPS53-219ENST00000576019 RPS20P60866 119 aaKnown RBP3.72□□□□□ -1.81
VPS53-219ENST00000576019 SNRPFP62306 86 aaKnown RBP3.72□□□□□ -1.81
VPS53-219ENST00000576019 ZCWPW2Q504Y3 356 aa3.72□□□□□ -1.81
VPS53-219ENST00000576019 KIAA2026Q5HYC2 2103 aa3.72□□□□□ -1.81
VPS53-219ENST00000576019 Q6ZR03 302 aa3.72□□□□□ -1.81
VPS53-219ENST00000576019 Q6ZR54 194 aa3.72□□□□□ -1.81
VPS53-219ENST00000576019 TMPPEQ6ZT21 453 aa3.72□□□□□ -1.81
VPS53-219ENST00000576019 LRP11Q86VZ4 500 aa3.72□□□□□ -1.81
VPS53-219ENST00000576019 LYG1Q8N1E2 194 aa3.72□□□□□ -1.81
VPS53-219ENST00000576019 UMODL1-AS1Q8N2C9 162 aa3.72□□□□□ -1.81
VPS53-219ENST00000576019 ZNF433Q8N7K0 673 aaPredicted RBP3.72□□□□□ -1.81
VPS53-219ENST00000576019 OR13C6PQ8NH95 151 aa3.72□□□□□ -1.81
VPS53-219ENST00000576019 LYSMD1Q96S90 227 aa3.72□□□□□ -1.81
VPS53-219ENST00000576019 PEBP4Q96S96 227 aa3.72□□□□□ -1.81
VPS53-219ENST00000576019 TBX5Q99593 518 aa3.72□□□□□ -1.81
VPS53-219ENST00000576019 ZNF286AQ9HBT8 521 aa3.72□□□□□ -1.81
VPS53-219ENST00000576019 RPS10P5Q9NQ39 176 aa3.72□□□□□ -1.81
VPS53-219ENST00000576019 SS18L2Q9UHA2 77 aa3.72□□□□□ -1.81
VPS53-219ENST00000576019 ANGPT4Q9Y264 503 aa3.72□□□□□ -1.81
VPS53-219ENST00000576019 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.71□□□□□ -1.82
VPS53-219ENST00000576019 IGHV3-43A0A0B4J1X8 118 aa3.71□□□□□ -1.82
VPS53-219ENST00000576019 OR5H14A6NHG9 310 aa3.71□□□□□ -1.82
VPS53-219ENST00000576019 CCNKO75909 580 aa3.71□□□□□ -1.82
VPS53-219ENST00000576019 S1PR2O95136 353 aa3.71□□□□□ -1.82
VPS53-219ENST00000576019 MT-CO2P00403 227 aa3.71□□□□□ -1.82
VPS53-219ENST00000576019 SERPINB1P30740 379 aa3.71□□□□□ -1.82
VPS53-219ENST00000576019 ZNF133P52736 654 aaPredicted RBP3.71□□□□□ -1.82
VPS53-219ENST00000576019 WNT4P56705 351 aa3.71□□□□□ -1.82
VPS53-219ENST00000576019 SNRPD2P62316 118 aaKnown RBP3.71□□□□□ -1.82
VPS53-219ENST00000576019 MMDQ15546 238 aa3.71□□□□□ -1.82
VPS53-219ENST00000576019 LELP1Q5T871 98 aa3.71□□□□□ -1.82
VPS53-219ENST00000576019 C5orf46Q6UWT4 87 aa3.71□□□□□ -1.82
VPS53-219ENST00000576019 FER1L6-AS1Q8NA97 138 aa3.71□□□□□ -1.82
VPS53-219ENST00000576019 DEFB108BQ8NET1 73 aa3.71□□□□□ -1.82
VPS53-219ENST00000576019 OR8B12Q8NGG6 310 aa3.71□□□□□ -1.82
VPS53-219ENST00000576019 OR10K1Q8NGX5 313 aa3.71□□□□□ -1.82
VPS53-219ENST00000576019 FRZBQ92765 325 aa3.71□□□□□ -1.82
VPS53-219ENST00000576019 RBPMSQ93062 196 aaKnown RBP3.71□□□□□ -1.82
VPS53-219ENST00000576019 CNBD2Q96M20 576 aa3.71□□□□□ -1.82
VPS53-219ENST00000576019 BIN3Q9NQY0 253 aa3.71□□□□□ -1.82
VPS53-219ENST00000576019 MRPS16Q9Y3D3 137 aaKnown RBP3.71□□□□□ -1.82
VPS53-219ENST00000576019 TRAV26-2A0A0B4J265 109 aa3.7□□□□□ -1.82
VPS53-219ENST00000576019 PPP5D1E7EU14 171 aa3.7□□□□□ -1.82
VPS53-219ENST00000576019 K7ERS5 55 aa3.7□□□□□ -1.82
VPS53-219ENST00000576019 GSTZ1O43708 216 aaPredicted RBP3.7□□□□□ -1.82
VPS53-219ENST00000576019 APOMO95445 188 aa3.7□□□□□ -1.82
VPS53-219ENST00000576019 HLA-DRB1P01911 266 aa3.7□□□□□ -1.82
VPS53-219ENST00000576019 PAEPP09466 180 aa3.7□□□□□ -1.82
VPS53-219ENST00000576019 IL15RAQ13261 267 aa3.7□□□□□ -1.82
VPS53-219ENST00000576019 TSNQ15631 228 aaKnown RBP3.7□□□□□ -1.82
VPS53-219ENST00000576019 RNF212Q495C1 297 aa3.7□□□□□ -1.82
VPS53-219ENST00000576019 NDUFA11Q86Y39 141 aa3.7□□□□□ -1.82
VPS53-219ENST00000576019 AMN1Q8IY45 258 aa3.7□□□□□ -1.82
VPS53-219ENST00000576019 MIR7-3HGQ8N6C7 128 aa3.7□□□□□ -1.82
VPS53-219ENST00000576019 OR9A2Q8NGT5 310 aa3.7□□□□□ -1.82
VPS53-219ENST00000576019 CMBLQ96DG6 245 aa3.7□□□□□ -1.82
VPS53-219ENST00000576019 GNPNAT1Q96EK6 184 aaPredicted RBP3.7□□□□□ -1.82
VPS53-219ENST00000576019 TM2D3Q9BRN9 247 aa3.7□□□□□ -1.82
VPS53-219ENST00000576019 TMEM147Q9BVK8 224 aa3.7□□□□□ -1.82
VPS53-219ENST00000576019 RNF122Q9H9V4 155 aa3.7□□□□□ -1.82
VPS53-219ENST00000576019 ZNF586Q9NXT0 402 aa3.7□□□□□ -1.82
VPS53-219ENST00000576019 ERGIC3Q9Y282 383 aa3.7□□□□□ -1.82
VPS53-219ENST00000576019 IGHV3-21A0A0B4J1V1 117 aa3.69□□□□□ -1.82
VPS53-219ENST00000576019 OR11H12B2RN74 326 aa3.69□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 111.2 ms