RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 MIC13Q5XKP0 118 aa12.94□□□□□ -0.34
NUP88-210ENST00000574867 OR1B1Q8NGR6 318 aa12.94□□□□□ -0.34
NUP88-210ENST00000574867 GRAMD2BQ96HH9 432 aa12.94□□□□□ -0.34
NUP88-210ENST00000574867 ARPC5LQ9BPX5 153 aa12.94□□□□□ -0.34
NUP88-210ENST00000574867 SLC39A9Q9NUM3 307 aa12.94□□□□□ -0.34
NUP88-210ENST00000574867 U3KQE9 123 aa12.94□□□□□ -0.34
NUP88-210ENST00000574867 CHEK1O14757 476 aa12.93□□□□□ -0.34
NUP88-210ENST00000574867 HYPMO75409 117 aa12.93□□□□□ -0.34
NUP88-210ENST00000574867 JTBO76095 146 aa12.93□□□□□ -0.34
NUP88-210ENST00000574867 CXCL2P19875 107 aa12.93□□□□□ -0.34
NUP88-210ENST00000574867 OXLD1Q5BKU9 147 aa12.93□□□□□ -0.34
NUP88-210ENST00000574867 ARL6Q9H0F7 186 aa12.93□□□□□ -0.34
NUP88-210ENST00000574867 MLXQ9UH92 298 aa12.93□□□□□ -0.34
NUP88-210ENST00000574867 NOTCH3Q9UM47 2321 aa12.93□□□□□ -0.34
NUP88-210ENST00000574867 CD5P06127 495 aa12.93□□□□□ -0.34
NUP88-210ENST00000574867 ST8SIA2Q92186 375 aa12.93□□□□□ -0.34
NUP88-210ENST00000574867 PFDN5Q99471 154 aa12.93□□□□□ -0.34
NUP88-210ENST00000574867 RSG1Q9BU20 258 aa12.93□□□□□ -0.34
NUP88-210ENST00000574867 DOK5Q9P104 306 aa12.93□□□□□ -0.34
NUP88-210ENST00000574867 ZMAT5Q9UDW3 170 aaKnown RBP12.93□□□□□ -0.34
NUP88-210ENST00000574867 HIGD1AQ9Y241 93 aa12.93□□□□□ -0.34
NUP88-210ENST00000574867 TIMM9Q9Y5J7 89 aa12.93□□□□□ -0.34
NUP88-210ENST00000574867 MGAM2Q2M2H8 2515 aa12.92□□□□□ -0.34
NUP88-210ENST00000574867 ELOA3CA0A087WX78 387 aaPredicted RBP12.92□□□□□ -0.34
NUP88-210ENST00000574867 IGHV3-49A0A0A0MS15 119 aa12.92□□□□□ -0.34
NUP88-210ENST00000574867 KANTRA0A1W2PQU2 76 aa12.92□□□□□ -0.34
NUP88-210ENST00000574867 BCL2L11O43521 198 aa12.92□□□□□ -0.34
NUP88-210ENST00000574867 DEFB114Q30KQ6 69 aa12.92□□□□□ -0.34
NUP88-210ENST00000574867 RPL7L1Q6DKI1 246 aaKnown RBP12.92□□□□□ -0.34
NUP88-210ENST00000574867 OR1L4Q8NGR5 311 aa12.92□□□□□ -0.34
NUP88-210ENST00000574867 PPP1R14BQ96C90 147 aa12.92□□□□□ -0.34
NUP88-210ENST00000574867 COX7A2P2O60397 106 aa12.92□□□□□ -0.34
NUP88-210ENST00000574867 PFDN1O60925 122 aa12.92□□□□□ -0.34
NUP88-210ENST00000574867 APOHP02749 345 aaPredicted RBP12.92□□□□□ -0.34
NUP88-210ENST00000574867 OR5G3P0C626 314 aa12.92□□□□□ -0.34
NUP88-210ENST00000574867 LCN12Q6JVE5 192 aa12.92□□□□□ -0.34
NUP88-210ENST00000574867 RNF24Q9Y225 148 aa12.92□□□□□ -0.34
NUP88-210ENST00000574867 IGHV3OR16-13A0A075B7E8 117 aa12.91□□□□□ -0.34
NUP88-210ENST00000574867 IGHV3-74A0A0B4J1X5 117 aa12.91□□□□□ -0.34
NUP88-210ENST00000574867 G3V4G9 280 aa12.91□□□□□ -0.34
NUP88-210ENST00000574867 BUB3O43684 328 aa12.91□□□□□ -0.34
NUP88-210ENST00000574867 CD300EQ496F6 205 aaPredicted RBP12.91□□□□□ -0.34
NUP88-210ENST00000574867 LAMTOR1Q6IAA8 161 aa12.91□□□□□ -0.34
NUP88-210ENST00000574867 HSD17B11Q8NBQ5 300 aa12.91□□□□□ -0.34
NUP88-210ENST00000574867 PSMG3Q9BT73 122 aaPredicted RBP12.91□□□□□ -0.34
NUP88-210ENST00000574867 ARV1Q9H2C2 271 aa12.91□□□□□ -0.34
NUP88-210ENST00000574867 TRAV25A0A0B4J276 109 aa12.9□□□□□ -0.34
NUP88-210ENST00000574867 C1orf194Q5T5A4 169 aa12.9□□□□□ -0.34
NUP88-210ENST00000574867 TMUB2Q71RG4 321 aa12.9□□□□□ -0.34
NUP88-210ENST00000574867 GNPNAT1Q96EK6 184 aaPredicted RBP12.9□□□□□ -0.34
NUP88-210ENST00000574867 RNF2Q99496 336 aa12.9□□□□□ -0.34
NUP88-210ENST00000574867 CYTL1Q9NRR1 136 aa12.9□□□□□ -0.34
NUP88-210ENST00000574867 IGHV3-66A0A0C4DH42 116 aa12.9□□□□□ -0.34
NUP88-210ENST00000574867 H3BRN7 92 aa12.9□□□□□ -0.34
NUP88-210ENST00000574867 EGFEM1PQ0D2K5 195 aa12.9□□□□□ -0.34
NUP88-210ENST00000574867 C10orf113Q5VZT2 155 aa12.9□□□□□ -0.34
NUP88-210ENST00000574867 C16orf54Q6UWD8 224 aa12.9□□□□□ -0.34
NUP88-210ENST00000574867 PATE2Q6UY27 113 aa12.9□□□□□ -0.34
NUP88-210ENST00000574867 GATAD1Q8WUU5 269 aa12.9□□□□□ -0.34
NUP88-210ENST00000574867 SHANK2-AS3Q9BTD1 123 aa12.9□□□□□ -0.34
NUP88-210ENST00000574867 SLC25A39Q9BZJ4 359 aaPredicted RBP12.9□□□□□ -0.34
NUP88-210ENST00000574867 DNAJC4Q9NNZ3 241 aa12.9□□□□□ -0.34
NUP88-210ENST00000574867 LGALSLQ3ZCW2 172 aaPredicted RBP12.89□□□□□ -0.35
NUP88-210ENST00000574867 RBPMS2Q6ZRY4 209 aaKnown RBP12.89□□□□□ -0.35
NUP88-210ENST00000574867 TMEM61Q8N0U2 210 aa12.89□□□□□ -0.35
NUP88-210ENST00000574867 OR2G3Q8NGZ4 309 aa12.89□□□□□ -0.35
NUP88-210ENST00000574867 HELTA6NFD8 242 aa12.89□□□□□ -0.35
NUP88-210ENST00000574867 ZNF98A6NK75 572 aa12.89□□□□□ -0.35
NUP88-210ENST00000574867 ATP6V0CP27449 155 aa12.89□□□□□ -0.35
NUP88-210ENST00000574867 EIF5AP63241 154 aaKnown RBP12.89□□□□□ -0.35
NUP88-210ENST00000574867 FFAR4Q5NUL3 377 aa12.89□□□□□ -0.35
NUP88-210ENST00000574867 LINC00305Q7Z4B0 112 aa12.89□□□□□ -0.35
NUP88-210ENST00000574867 GLMPQ8WWB7 406 aa12.89□□□□□ -0.35
NUP88-210ENST00000574867 TMEM37Q8WXS4 190 aa12.89□□□□□ -0.35
NUP88-210ENST00000574867 UHRF2Q96PU4 802 aa12.89□□□□□ -0.35
NUP88-210ENST00000574867 CMYA5Q8N3K9 4069 aa12.88□□□□□ -0.35
NUP88-210ENST00000574867 C4BPBP20851 252 aa12.88□□□□□ -0.35
NUP88-210ENST00000574867 KPRPQ5T749 579 aaPredicted RBP12.88□□□□□ -0.35
NUP88-210ENST00000574867 TCF24Q7RTU0 167 aa12.88□□□□□ -0.35
NUP88-210ENST00000574867 C9orf62Q8N4C0 152 aa12.88□□□□□ -0.35
NUP88-210ENST00000574867 GPR82Q96P67 336 aa12.88□□□□□ -0.35
NUP88-210ENST00000574867 ZNF471Q9BX82 626 aaPredicted RBP12.88□□□□□ -0.35
NUP88-210ENST00000574867 TSPAN4O14817 238 aa12.87□□□□□ -0.35
NUP88-210ENST00000574867 SERF2P84101 59 aa12.87□□□□□ -0.35
NUP88-210ENST00000574867 FAM90A2PQ658T7 463 aa12.87□□□□□ -0.35
NUP88-210ENST00000574867 SCRT1Q9BWW7 348 aa12.87□□□□□ -0.35
NUP88-210ENST00000574867 BEAN1Q3B7T3 259 aa12.87□□□□□ -0.35
NUP88-210ENST00000574867 SIGLEC15Q6ZMC9 328 aa12.87□□□□□ -0.35
NUP88-210ENST00000574867 OR8I2Q8N0Y5 310 aa12.87□□□□□ -0.35
NUP88-210ENST00000574867 SPAG8Q99932 426 aaPredicted RBP12.87□□□□□ -0.35
NUP88-210ENST00000574867 SLC25A22Q9H936 323 aa12.87□□□□□ -0.35
NUP88-210ENST00000574867 ACOT6Q3I5F7 207 aaPredicted RBP12.86□□□□□ -0.35
NUP88-210ENST00000574867 MRPL32Q9BYC8 188 aaKnown RBP12.86□□□□□ -0.35
NUP88-210ENST00000574867 SH3BGRL3Q9H299 93 aa12.86□□□□□ -0.35
NUP88-210ENST00000574867 ZNF256Q9Y2P7 627 aaPredicted RBP12.86□□□□□ -0.35
NUP88-210ENST00000574867 IZUMO1RA6ND01 250 aa12.85□□□□□ -0.35
NUP88-210ENST00000574867 GCSAMLQ5JQS6 135 aa12.85□□□□□ -0.35
NUP88-210ENST00000574867 STOML3Q8TAV4 291 aa12.85□□□□□ -0.35
NUP88-210ENST00000574867 SELENOKQ9Y6D0 94 aa12.85□□□□□ -0.35
NUP88-210ENST00000574867 MBP02144 154 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms