RNA–Protein interactions for RNA: ENST00000572750.1

CHD3-215, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 750 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-215ENST00000572750 C16orf54Q6UWD8 224 aa11.78□□□□□ -0.52
CHD3-215ENST00000572750 WFDC3Q8IUB2 231 aa11.78□□□□□ -0.52
CHD3-215ENST00000572750 STPG3Q8N7X2 389 aa11.78□□□□□ -0.52
CHD3-215ENST00000572750 STXBP6Q8NFX7 210 aa11.78□□□□□ -0.52
CHD3-215ENST00000572750 DOK5Q9P104 306 aa11.78□□□□□ -0.52
CHD3-215ENST00000572750 STAB2Q8WWQ8 2551 aa11.78□□□□□ -0.52
CHD3-215ENST00000572750 A8MZ25 164 aa11.77□□□□□ -0.53
CHD3-215ENST00000572750 BUB3O43684 328 aa11.77□□□□□ -0.53
CHD3-215ENST00000572750 CD5P06127 495 aa11.77□□□□□ -0.53
CHD3-215ENST00000572750 LINC00869P0C866 280 aa11.77□□□□□ -0.53
CHD3-215ENST00000572750 PET100P0DJ07 73 aa11.77□□□□□ -0.53
CHD3-215ENST00000572750 ORM2P19652 201 aa11.77□□□□□ -0.53
CHD3-215ENST00000572750 HBG1P69891 147 aa11.77□□□□□ -0.53
CHD3-215ENST00000572750 HBG2P69892 147 aa11.77□□□□□ -0.53
CHD3-215ENST00000572750 SBSPONQ8IVN8 264 aa11.77□□□□□ -0.53
CHD3-215ENST00000572750 FAM24BQ8N5W8 94 aa11.77□□□□□ -0.53
CHD3-215ENST00000572750 OR1B1Q8NGR6 318 aa11.77□□□□□ -0.53
CHD3-215ENST00000572750 PPP1R14BQ96C90 147 aa11.77□□□□□ -0.53
CHD3-215ENST00000572750 MGST2Q99735 147 aa11.77□□□□□ -0.53
CHD3-215ENST00000572750 TMEM147Q9BVK8 224 aa11.77□□□□□ -0.53
CHD3-215ENST00000572750 UQCC1Q9NVA1 299 aa11.77□□□□□ -0.53
CHD3-215ENST00000572750 MBD2Q9UBB5 411 aa11.77□□□□□ -0.53
CHD3-215ENST00000572750 HELTA6NFD8 242 aa11.76□□□□□ -0.53
CHD3-215ENST00000572750 DNASE2O00115 360 aaPredicted RBP11.76□□□□□ -0.53
CHD3-215ENST00000572750 AGPAT2O15120 278 aa11.76□□□□□ -0.53
CHD3-215ENST00000572750 CFDP00746 253 aaPredicted RBP11.76□□□□□ -0.53
CHD3-215ENST00000572750 NUP62P37198 522 aaPredicted RBP11.76□□□□□ -0.53
CHD3-215ENST00000572750 PAFAH1B2P68402 229 aa11.76□□□□□ -0.53
CHD3-215ENST00000572750 NHLH2Q02577 135 aa11.76□□□□□ -0.53
CHD3-215ENST00000572750 VWC2Q2TAL6 325 aa11.76□□□□□ -0.53
CHD3-215ENST00000572750 SIGLEC15Q6ZMC9 328 aa11.76□□□□□ -0.53
CHD3-215ENST00000572750 ZNF546Q86UE3 836 aa11.76□□□□□ -0.53
CHD3-215ENST00000572750 CITED4Q96RK1 184 aa11.76□□□□□ -0.53
CHD3-215ENST00000572750 RNF126Q9BV68 326 aa11.76□□□□□ -0.53
CHD3-215ENST00000572750 RBMY1BA6NDE4 496 aaKnown RBP11.75□□□□□ -0.53
CHD3-215ENST00000572750 RBMY1EA6NEQ0 496 aaKnown RBP11.75□□□□□ -0.53
CHD3-215ENST00000572750 RBMY1DP0C7P1 496 aaKnown RBP11.75□□□□□ -0.53
CHD3-215ENST00000572750 S100A11P31949 105 aa11.75□□□□□ -0.53
CHD3-215ENST00000572750 SELENOTP62341 195 aa11.75□□□□□ -0.53
CHD3-215ENST00000572750 BAXQ07812 192 aa11.75□□□□□ -0.53
CHD3-215ENST00000572750 ZNF124Q15973 351 aa11.75□□□□□ -0.53
CHD3-215ENST00000572750 APRG1Q8IVJ8 170 aa11.75□□□□□ -0.53
CHD3-215ENST00000572750 OR5C1Q8NGR4 320 aa11.75□□□□□ -0.53
CHD3-215ENST00000572750 SLC25A31Q9H0C2 315 aa11.75□□□□□ -0.53
CHD3-215ENST00000572750 MAP6D1Q9H9H5 199 aa11.75□□□□□ -0.53
CHD3-215ENST00000572750 WDR83OSQ9Y284 106 aa11.75□□□□□ -0.53
CHD3-215ENST00000572750 CAMLGP49069 296 aa11.74□□□□□ -0.53
CHD3-215ENST00000572750 CLINT1Q14677 625 aa11.74□□□□□ -0.53
CHD3-215ENST00000572750 DCANP1Q8TF63 244 aa11.74□□□□□ -0.53
CHD3-215ENST00000572750 SCRT1Q9BWW7 348 aa11.74□□□□□ -0.53
CHD3-215ENST00000572750 ARL6Q9H0F7 186 aa11.74□□□□□ -0.53
CHD3-215ENST00000572750 SLC25A22Q9H936 323 aa11.74□□□□□ -0.53
CHD3-215ENST00000572750 PFDN2Q9UHV9 154 aa11.74□□□□□ -0.53
CHD3-215ENST00000572750 SLC45A2Q9UMX9 530 aa11.74□□□□□ -0.53
CHD3-215ENST00000572750 TRAV2A0A0B4J234 112 aa11.73□□□□□ -0.53
CHD3-215ENST00000572750 K7EQG2 157 aa11.73□□□□□ -0.53
CHD3-215ENST00000572750 OR5G3P0C626 314 aa11.73□□□□□ -0.53
CHD3-215ENST00000572750 FGF7P21781 194 aa11.73□□□□□ -0.53
CHD3-215ENST00000572750 LEMD1Q68G75 181 aa11.73□□□□□ -0.53
CHD3-215ENST00000572750 THAP6Q8TBB0 222 aa11.73□□□□□ -0.53
CHD3-215ENST00000572750 UHRF2Q96PU4 802 aa11.73□□□□□ -0.53
CHD3-215ENST00000572750 GGTLC1Q9BX51 225 aa11.73□□□□□ -0.53
CHD3-215ENST00000572750 SLC25A32Q9H2D1 315 aa11.73□□□□□ -0.53
CHD3-215ENST00000572750 HIGD1AQ9Y241 93 aa11.73□□□□□ -0.53
CHD3-215ENST00000572750 ZNF98A6NK75 572 aa11.72□□□□□ -0.53
CHD3-215ENST00000572750 H3BRN7 92 aa11.72□□□□□ -0.53
CHD3-215ENST00000572750 HYPMO75409 117 aa11.72□□□□□ -0.53
CHD3-215ENST00000572750 ZNF688P0C7X2 276 aa11.72□□□□□ -0.53
CHD3-215ENST00000572750 RAP2BP61225 183 aa11.72□□□□□ -0.53
CHD3-215ENST00000572750 HAGHQ16775 308 aa11.72□□□□□ -0.53
CHD3-215ENST00000572750 C1orf194Q5T5A4 169 aa11.72□□□□□ -0.53
CHD3-215ENST00000572750 MIC13Q5XKP0 118 aa11.72□□□□□ -0.53
CHD3-215ENST00000572750 LINC00322Q6ZN03 302 aaPredicted RBP11.72□□□□□ -0.53
CHD3-215ENST00000572750 OR8I2Q8N0Y5 310 aa11.72□□□□□ -0.53
CHD3-215ENST00000572750 FAM110AQ9BQ89 295 aa11.72□□□□□ -0.53
CHD3-215ENST00000572750 NRN1Q9NPD7 142 aa11.72□□□□□ -0.53
CHD3-215ENST00000572750 GIPP09681 153 aaPredicted RBP11.71□□□□□ -0.53
CHD3-215ENST00000572750 LYL1P12980 280 aa11.71□□□□□ -0.53
CHD3-215ENST00000572750 RPL12P30050 165 aaKnown RBP11.71□□□□□ -0.53
CHD3-215ENST00000572750 AP2S1P53680 142 aaPredicted RBP11.71□□□□□ -0.53
CHD3-215ENST00000572750 DEFB131AP59861 70 aa11.71□□□□□ -0.53
CHD3-215ENST00000572750 PLP1P60201 277 aa11.71□□□□□ -0.53
CHD3-215ENST00000572750 RAB31Q13636 194 aa11.71□□□□□ -0.53
CHD3-215ENST00000572750 OPCMLQ14982 345 aa11.71□□□□□ -0.53
CHD3-215ENST00000572750 ATP6V1FQ16864 119 aa11.71□□□□□ -0.53
CHD3-215ENST00000572750 PATE2Q6UY27 113 aa11.71□□□□□ -0.53
CHD3-215ENST00000572750 SHANK2-AS3Q9BTD1 123 aa11.71□□□□□ -0.53
CHD3-215ENST00000572750 SLC25A39Q9BZJ4 359 aaPredicted RBP11.71□□□□□ -0.53
CHD3-215ENST00000572750 SMIM3Q9BZL3 60 aa11.71□□□□□ -0.53
CHD3-215ENST00000572750 FBXL17Q9UF56 701 aa11.71□□□□□ -0.53
CHD3-215ENST00000572750 HSPB11Q9Y547 144 aa11.71□□□□□ -0.53
CHD3-215ENST00000572750 COX7A2P2O60397 106 aa11.7□□□□□ -0.54
CHD3-215ENST00000572750 NHLRC4P0CG21 123 aaPredicted RBP11.7□□□□□ -0.54
CHD3-215ENST00000572750 PRR20EP86478 221 aa11.7□□□□□ -0.54
CHD3-215ENST00000572750 PRR20CP86479 221 aa11.7□□□□□ -0.54
CHD3-215ENST00000572750 PRR20DP86480 221 aa11.7□□□□□ -0.54
CHD3-215ENST00000572750 PRR20BP86481 221 aa11.7□□□□□ -0.54
CHD3-215ENST00000572750 PRR20AP86496 221 aa11.7□□□□□ -0.54
CHD3-215ENST00000572750 Q5BKY6 102 aa11.7□□□□□ -0.54
CHD3-215ENST00000572750 ATP5SQ99766 215 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms