RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 SNRPGP15A8MWD9 76 aa5.99□□□□□ -1.45
VPS53-214ENST00000572607 H3BP45 60 aa5.99□□□□□ -1.45
VPS53-214ENST00000572607 SSSCA1O60232 199 aa5.99□□□□□ -1.45
VPS53-214ENST00000572607 LYZP61626 148 aa5.99□□□□□ -1.45
VPS53-214ENST00000572607 POLR2GP62487 172 aaKnown RBP eCLIP5.99□□□□□ -1.45
VPS53-214ENST00000572607 IAH1Q2TAA2 248 aaPredicted RBP5.99□□□□□ -1.45
VPS53-214ENST00000572607 LEMD1Q68G75 181 aa5.99□□□□□ -1.45
VPS53-214ENST00000572607 C16orf54Q6UWD8 224 aa5.99□□□□□ -1.45
VPS53-214ENST00000572607 SIGLEC15Q6ZMC9 328 aa5.99□□□□□ -1.45
VPS53-214ENST00000572607 STHQ8IWL8 128 aa5.99□□□□□ -1.45
VPS53-214ENST00000572607 TMEM217Q8N7C4 229 aa5.99□□□□□ -1.45
VPS53-214ENST00000572607 MITD1Q8WV92 249 aa5.99□□□□□ -1.45
VPS53-214ENST00000572607 TRGV9Q99603 122 aa5.99□□□□□ -1.45
VPS53-214ENST00000572607 OVOL2Q9BRP0 275 aa5.99□□□□□ -1.45
VPS53-214ENST00000572607 WDR12Q9GZL7 423 aaKnown RBP5.99□□□□□ -1.45
VPS53-214ENST00000572607 CSTL1Q9H114 145 aa5.99□□□□□ -1.45
VPS53-214ENST00000572607 GSKIPQ9P0R6 139 aa5.99□□□□□ -1.45
VPS53-214ENST00000572607 FBXL17Q9UF56 701 aa5.99□□□□□ -1.45
VPS53-214ENST00000572607 TRAV6A0A075B6T7 132 aa5.98□□□□□ -1.45
VPS53-214ENST00000572607 FAM240BA0A1B0GVZ2 78 aa5.98□□□□□ -1.45
VPS53-214ENST00000572607 K7EQG2 157 aa5.98□□□□□ -1.45
VPS53-214ENST00000572607 L7N2F9 121 aa5.98□□□□□ -1.45
VPS53-214ENST00000572607 PLA2G10O15496 165 aa5.98□□□□□ -1.45
VPS53-214ENST00000572607 BUB3O43684 328 aa5.98□□□□□ -1.45
VPS53-214ENST00000572607 TCRBP04435 133 aa5.98□□□□□ -1.45
VPS53-214ENST00000572607 ZNF688P0C7X2 276 aa5.98□□□□□ -1.45
VPS53-214ENST00000572607 SNRPD3P62318 126 aaKnown RBP5.98□□□□□ -1.45
VPS53-214ENST00000572607 VAMP2P63027 116 aa5.98□□□□□ -1.45
VPS53-214ENST00000572607 ZNF90Q03938 601 aa5.98□□□□□ -1.45
VPS53-214ENST00000572607 OR2F1Q13607 317 aa5.98□□□□□ -1.45
VPS53-214ENST00000572607 LCE5AQ5TCM9 118 aa5.98□□□□□ -1.45
VPS53-214ENST00000572607 BPIFCQ8NFQ6 507 aa5.98□□□□□ -1.45
VPS53-214ENST00000572607 OR4D5Q8NGN0 318 aa5.98□□□□□ -1.45
VPS53-214ENST00000572607 GLMPQ8WWB7 406 aa5.98□□□□□ -1.45
VPS53-214ENST00000572607 RNF183Q96D59 192 aa5.98□□□□□ -1.45
VPS53-214ENST00000572607 RAB40CQ96S21 281 aa5.98□□□□□ -1.45
VPS53-214ENST00000572607 KRTAP4-5Q9BYR2 181 aa5.98□□□□□ -1.45
VPS53-214ENST00000572607 NRN1Q9NPD7 142 aa5.98□□□□□ -1.45
VPS53-214ENST00000572607 NUDT15Q9NV35 164 aa5.98□□□□□ -1.45
VPS53-214ENST00000572607 IGKV1D-37A0A075B6S9 117 aa5.97□□□□□ -1.45
VPS53-214ENST00000572607 LCE6AA0A183 80 aa5.97□□□□□ -1.45
VPS53-214ENST00000572607 C5orf51A6NDU8 294 aa5.97□□□□□ -1.45
VPS53-214ENST00000572607 FAM25EA8MYX2 175 aa5.97□□□□□ -1.45
VPS53-214ENST00000572607 CA1P00915 261 aaPredicted RBP5.97□□□□□ -1.45
VPS53-214ENST00000572607 TMEM41BQ5BJD5 291 aa5.97□□□□□ -1.45
VPS53-214ENST00000572607 PSMG4Q5JS54 123 aa5.97□□□□□ -1.45
VPS53-214ENST00000572607 SAMD13Q5VXD3 122 aa5.97□□□□□ -1.45
VPS53-214ENST00000572607 MORN3Q6PF18 240 aaPredicted RBP5.97□□□□□ -1.45
VPS53-214ENST00000572607 ACOT7LQ6ZUV0 252 aa5.97□□□□□ -1.45
VPS53-214ENST00000572607 C12orf45Q8N5I9 185 aaPredicted RBP5.97□□□□□ -1.45
VPS53-214ENST00000572607 FAM24BQ8N5W8 94 aa5.97□□□□□ -1.45
VPS53-214ENST00000572607 THAP8Q8NA92 274 aa5.97□□□□□ -1.45
VPS53-214ENST00000572607 ZBTB8BQ8NAP8 495 aaPredicted RBP5.97□□□□□ -1.45
VPS53-214ENST00000572607 ENKURQ8TC29 256 aa5.97□□□□□ -1.45
VPS53-214ENST00000572607 ZNF431Q8TF32 576 aaPredicted RBP5.97□□□□□ -1.45
VPS53-214ENST00000572607 GATAD1Q8WUU5 269 aa5.97□□□□□ -1.45
VPS53-214ENST00000572607 SMIM8Q96KF7 97 aa5.97□□□□□ -1.45
VPS53-214ENST00000572607 TMEM147Q9BVK8 224 aa5.97□□□□□ -1.45
VPS53-214ENST00000572607 SEPSECSQ9HD40 501 aaKnown RBP5.97□□□□□ -1.45
VPS53-214ENST00000572607 PTTG2Q9NZH5 202 aa5.97□□□□□ -1.45
VPS53-214ENST00000572607 MGAT4CQ9UBM8 478 aa5.97□□□□□ -1.45
VPS53-214ENST00000572607 A0A0J9YWU9 116 aa5.96□□□□□ -1.46
VPS53-214ENST00000572607 TSC22D2O75157 780 aa5.96□□□□□ -1.46
VPS53-214ENST00000572607 IL5P05113 134 aa5.96□□□□□ -1.46
VPS53-214ENST00000572607 SPP1P10451 314 aa5.96□□□□□ -1.46
VPS53-214ENST00000572607 PVALBP20472 110 aaPredicted RBP5.96□□□□□ -1.46
VPS53-214ENST00000572607 ID1P41134 155 aa5.96□□□□□ -1.46
VPS53-214ENST00000572607 BCAP31P51572 246 aa5.96□□□□□ -1.46
VPS53-214ENST00000572607 TAS2R30P59541 319 aa5.96□□□□□ -1.46
VPS53-214ENST00000572607 RAP2BP61225 183 aa5.96□□□□□ -1.46
VPS53-214ENST00000572607 ACTL10Q5JWF8 245 aa5.96□□□□□ -1.46
VPS53-214ENST00000572607 C1orf194Q5T5A4 169 aa5.96□□□□□ -1.46
VPS53-214ENST00000572607 S100A7AQ86SG5 101 aa5.96□□□□□ -1.46
VPS53-214ENST00000572607 OR8I2Q8N0Y5 310 aa5.96□□□□□ -1.46
VPS53-214ENST00000572607 OR10P1Q8NGE3 313 aa5.96□□□□□ -1.46
VPS53-214ENST00000572607 DCANP1Q8TF63 244 aa5.96□□□□□ -1.46
VPS53-214ENST00000572607 RARRES2Q99969 163 aa5.96□□□□□ -1.46
VPS53-214ENST00000572607 GPN1Q9HCN4 374 aaPredicted RBP5.96□□□□□ -1.46
VPS53-214ENST00000572607 SLC45A2Q9UMX9 530 aa5.96□□□□□ -1.46
VPS53-214ENST00000572607 CXorf65A6NEN9 183 aa5.95□□□□□ -1.46
VPS53-214ENST00000572607 KNCNA6PVL3 124 aa5.95□□□□□ -1.46
VPS53-214ENST00000572607 PRSS46E5RG02 174 aa5.95□□□□□ -1.46
VPS53-214ENST00000572607 CCSO14618 274 aa5.95□□□□□ -1.46
VPS53-214ENST00000572607 JTBO76095 146 aa5.95□□□□□ -1.46
VPS53-214ENST00000572607 METTL15P1P0C7V9 234 aa5.95□□□□□ -1.46
VPS53-214ENST00000572607 ORM2P19652 201 aa5.95□□□□□ -1.46
VPS53-214ENST00000572607 GALR1P47211 349 aa5.95□□□□□ -1.46
VPS53-214ENST00000572607 MEOX2P50222 304 aa5.95□□□□□ -1.46
VPS53-214ENST00000572607 DEFA1P59665 94 aa5.95□□□□□ -1.46
VPS53-214ENST00000572607 DEFA3P59666 94 aa5.95□□□□□ -1.46
VPS53-214ENST00000572607 NUTF2P61970 127 aaKnown RBP5.95□□□□□ -1.46
VPS53-214ENST00000572607 RRAS2P62070 204 aaPredicted RBP5.95□□□□□ -1.46
VPS53-214ENST00000572607 SELENOTP62341 195 aa5.95□□□□□ -1.46
VPS53-214ENST00000572607 DLK1P80370 383 aa5.95□□□□□ -1.46
VPS53-214ENST00000572607 ASAH1Q13510 395 aa5.95□□□□□ -1.46
VPS53-214ENST00000572607 TMEM14EPQ6UXP3 125 aa5.95□□□□□ -1.46
VPS53-214ENST00000572607 GSG1LQ6UXU4 331 aa5.95□□□□□ -1.46
VPS53-214ENST00000572607 CYP2G1PQ6ZSU1 146 aa5.95□□□□□ -1.46
VPS53-214ENST00000572607 TMEM144Q7Z5S9 345 aa5.95□□□□□ -1.46
VPS53-214ENST00000572607 OR1B1Q8NGR6 318 aa5.95□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms