RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 TMEM61Q8N0U2 210 aa6.98□□□□□ -1.29
VPS35-211ENST00000569950 C9orf62Q8N4C0 152 aa6.98□□□□□ -1.29
VPS35-211ENST00000569950 BPIFCQ8NFQ6 507 aa6.98□□□□□ -1.29
VPS35-211ENST00000569950 Q8WTZ3 238 aa6.98□□□□□ -1.29
VPS35-211ENST00000569950 GLMPQ8WWB7 406 aa6.98□□□□□ -1.29
VPS35-211ENST00000569950 RNF2Q99496 336 aa6.98□□□□□ -1.29
VPS35-211ENST00000569950 ELOVL1Q9BW60 279 aa6.98□□□□□ -1.29
VPS35-211ENST00000569950 RHPN1-AS1Q9BWJ2 59 aa6.98□□□□□ -1.29
VPS35-211ENST00000569950 MFFQ9GZY8 342 aa6.98□□□□□ -1.29
VPS35-211ENST00000569950 AGRNO00468 2067 aa6.97□□□□□ -1.29
VPS35-211ENST00000569950 IGHV3-66A0A0C4DH42 116 aa6.97□□□□□ -1.29
VPS35-211ENST00000569950 H3BRN7 92 aa6.97□□□□□ -1.29
VPS35-211ENST00000569950 MPDU1O75352 247 aa6.97□□□□□ -1.29
VPS35-211ENST00000569950 EIF2B2P49770 351 aaKnown RBP6.97□□□□□ -1.29
VPS35-211ENST00000569950 INSL3P51460 131 aa6.97□□□□□ -1.29
VPS35-211ENST00000569950 AP2S1P53680 142 aaPredicted RBP6.97□□□□□ -1.29
VPS35-211ENST00000569950 LYZP61626 148 aa6.97□□□□□ -1.29
VPS35-211ENST00000569950 SELENOTP62341 195 aa6.97□□□□□ -1.29
VPS35-211ENST00000569950 MARC2Q969Z3 335 aa6.97□□□□□ -1.29
VPS35-211ENST00000569950 UHRF2Q96PU4 802 aa6.97□□□□□ -1.29
VPS35-211ENST00000569950 MCRIP2Q9BUT9 160 aaKnown RBP6.97□□□□□ -1.29
VPS35-211ENST00000569950 SCRT1Q9BWW7 348 aa6.97□□□□□ -1.29
VPS35-211ENST00000569950 SH3BGRL3Q9H299 93 aa6.97□□□□□ -1.29
VPS35-211ENST00000569950 SLC39A9Q9NUM3 307 aa6.97□□□□□ -1.29
VPS35-211ENST00000569950 DOK5Q9P104 306 aa6.97□□□□□ -1.29
VPS35-211ENST00000569950 PEMTQ9UBM1 199 aa6.97□□□□□ -1.29
VPS35-211ENST00000569950 ZNF256Q9Y2P7 627 aaPredicted RBP6.97□□□□□ -1.29
VPS35-211ENST00000569950 PXMP4Q9Y6I8 212 aa6.97□□□□□ -1.29
VPS35-211ENST00000569950 SMAD5-AS1Q9Y6J3 95 aa6.97□□□□□ -1.29
VPS35-211ENST00000569950 NBEAL2Q6ZNJ1 2754 aa6.97□□□□□ -1.29
VPS35-211ENST00000569950 DNAH9Q9NYC9 4486 aa6.96□□□□□ -1.3
VPS35-211ENST00000569950 DFFBO76075 338 aa6.96□□□□□ -1.3
VPS35-211ENST00000569950 HNRNPCP07910 306 aaKnown RBP eCLIP6.96□□□□□ -1.3
VPS35-211ENST00000569950 NPPCP23582 126 aa6.96□□□□□ -1.3
VPS35-211ENST00000569950 ATP6V0CP27449 155 aa6.96□□□□□ -1.3
VPS35-211ENST00000569950 SPATA31B1PQ5VZV4 182 aa6.96□□□□□ -1.3
VPS35-211ENST00000569950 INO80EQ8NBZ0 244 aaPredicted RBP6.96□□□□□ -1.3
VPS35-211ENST00000569950 GINS3Q9BRX5 216 aa6.96□□□□□ -1.3
VPS35-211ENST00000569950 SHANK2-AS3Q9BTD1 123 aa6.96□□□□□ -1.3
VPS35-211ENST00000569950 PBDC1Q9BVG4 233 aa6.96□□□□□ -1.3
VPS35-211ENST00000569950 SLC25A39Q9BZJ4 359 aaPredicted RBP6.96□□□□□ -1.3
VPS35-211ENST00000569950 ARL6Q9H0F7 186 aa6.96□□□□□ -1.3
VPS35-211ENST00000569950 C19orf73Q9NVV2 129 aa6.96□□□□□ -1.3
VPS35-211ENST00000569950 TECRQ9NZ01 308 aaKnown RBP6.96□□□□□ -1.3
VPS35-211ENST00000569950 TGP01266 2768 aa6.95□□□□□ -1.3
VPS35-211ENST00000569950 ZNF98A6NK75 572 aa6.95□□□□□ -1.3
VPS35-211ENST00000569950 BCL2L11O43521 198 aa6.95□□□□□ -1.3
VPS35-211ENST00000569950 CFDP00746 253 aaPredicted RBP6.95□□□□□ -1.3
VPS35-211ENST00000569950 FABP1P07148 127 aa6.95□□□□□ -1.3
VPS35-211ENST00000569950 ORM2P19652 201 aa6.95□□□□□ -1.3
VPS35-211ENST00000569950 NKX2-5P52952 324 aaPredicted RBP6.95□□□□□ -1.3
VPS35-211ENST00000569950 B2MP61769 119 aa6.95□□□□□ -1.3
VPS35-211ENST00000569950 LEMD1Q68G75 181 aa6.95□□□□□ -1.3
VPS35-211ENST00000569950 TMUB2Q71RG4 321 aa6.95□□□□□ -1.3
VPS35-211ENST00000569950 Q8N1Y9 231 aa6.95□□□□□ -1.3
VPS35-211ENST00000569950 FAM24BQ8N5W8 94 aa6.95□□□□□ -1.3
VPS35-211ENST00000569950 HSD17B11Q8NBQ5 300 aa6.95□□□□□ -1.3
VPS35-211ENST00000569950 OR1B1Q8NGR6 318 aa6.95□□□□□ -1.3
VPS35-211ENST00000569950 OR2G3Q8NGZ4 309 aa6.95□□□□□ -1.3
VPS35-211ENST00000569950 DCANP1Q8TF63 244 aa6.95□□□□□ -1.3
VPS35-211ENST00000569950 FAM167A-AS1Q96KT0 104 aa6.95□□□□□ -1.3
VPS35-211ENST00000569950 HYLS1Q96M11 299 aa6.95□□□□□ -1.3
VPS35-211ENST00000569950 METTL26Q96S19 204 aa6.95□□□□□ -1.3
VPS35-211ENST00000569950 SLC25A32Q9H2D1 315 aa6.95□□□□□ -1.3
VPS35-211ENST00000569950 SEPSECSQ9HD40 501 aaKnown RBP6.95□□□□□ -1.3
VPS35-211ENST00000569950 RABAC1Q9UI14 185 aa6.95□□□□□ -1.3
VPS35-211ENST00000569950 TIMM9Q9Y5J7 89 aa6.95□□□□□ -1.3
VPS35-211ENST00000569950 TRAV5A0A0B4J249 113 aa6.94□□□□□ -1.3
VPS35-211ENST00000569950 A0A0D9SG52 128 aa6.94□□□□□ -1.3
VPS35-211ENST00000569950 SOCS3O14543 225 aa6.94□□□□□ -1.3
VPS35-211ENST00000569950 TSPAN4O14817 238 aa6.94□□□□□ -1.3
VPS35-211ENST00000569950 HYPMO75409 117 aa6.94□□□□□ -1.3
VPS35-211ENST00000569950 SCGB2A1O75556 95 aa6.94□□□□□ -1.3
VPS35-211ENST00000569950 EIF3GO75821 320 aaKnown RBP eCLIP6.94□□□□□ -1.3
VPS35-211ENST00000569950 PRB2P02812 416 aaPredicted RBP6.94□□□□□ -1.3
VPS35-211ENST00000569950 OR5G3P0C626 314 aa6.94□□□□□ -1.3
VPS35-211ENST00000569950 RAB2AP61019 212 aa6.94□□□□□ -1.3
VPS35-211ENST00000569950 PXDC1Q5TGL8 231 aa6.94□□□□□ -1.3
VPS35-211ENST00000569950 SSX7Q7RTT5 188 aa6.94□□□□□ -1.3
VPS35-211ENST00000569950 TCF24Q7RTU0 167 aa6.94□□□□□ -1.3
VPS35-211ENST00000569950 OR2K2Q8NGT1 345 aa6.94□□□□□ -1.3
VPS35-211ENST00000569950 ZNF503Q96F45 646 aa6.94□□□□□ -1.3
VPS35-211ENST00000569950 ARPC5LQ9BPX5 153 aa6.94□□□□□ -1.3
VPS35-211ENST00000569950 PSMG3Q9BT73 122 aaPredicted RBP6.94□□□□□ -1.3
VPS35-211ENST00000569950 HIGD1AQ9Y241 93 aa6.94□□□□□ -1.3
VPS35-211ENST00000569950 TRAV25A0A0B4J276 109 aa6.93□□□□□ -1.3
VPS35-211ENST00000569950 BOLA2-SMG1P6H3BVE0 249 aa6.93□□□□□ -1.3
VPS35-211ENST00000569950 K7EIL1 84 aa6.93□□□□□ -1.3
VPS35-211ENST00000569950 TAAR5O14804 337 aa6.93□□□□□ -1.3
VPS35-211ENST00000569950 IFNA5P01569 189 aa6.93□□□□□ -1.3
VPS35-211ENST00000569950 SPP1P10451 314 aa6.93□□□□□ -1.3
VPS35-211ENST00000569950 GP9P14770 177 aa6.93□□□□□ -1.3
VPS35-211ENST00000569950 NUP62P37198 522 aaPredicted RBP6.93□□□□□ -1.3
VPS35-211ENST00000569950 ZNF266Q14584 549 aa6.93□□□□□ -1.3
VPS35-211ENST00000569950 ZNF726P1Q15940 193 aa6.93□□□□□ -1.3
VPS35-211ENST00000569950 ODF3L2Q3SX64 289 aa6.93□□□□□ -1.3
VPS35-211ENST00000569950 ZFP69Q49AA0 526 aa6.93□□□□□ -1.3
VPS35-211ENST00000569950 C1orf194Q5T5A4 169 aa6.93□□□□□ -1.3
VPS35-211ENST00000569950 MIR17HGQ75NE6 70 aa6.93□□□□□ -1.3
VPS35-211ENST00000569950 LINC00305Q7Z4B0 112 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 85.6 ms