RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 LINC00869P0C866 280 aa9.67□□□□□ -0.86
CLK3-224ENST00000568605 RAP2BP61225 183 aa9.67□□□□□ -0.86
CLK3-224ENST00000568605 RAB31Q13636 194 aa9.67□□□□□ -0.86
CLK3-224ENST00000568605 LRRC37A5PQ49AS3 106 aa9.67□□□□□ -0.86
CLK3-224ENST00000568605 C1orf194Q5T5A4 169 aa9.67□□□□□ -0.86
CLK3-224ENST00000568605 SAMD13Q5VXD3 122 aa9.67□□□□□ -0.86
CLK3-224ENST00000568605 WWC2-AS2Q96NR7 200 aa9.67□□□□□ -0.86
CLK3-224ENST00000568605 SLC25A31Q9H0C2 315 aa9.67□□□□□ -0.86
CLK3-224ENST00000568605 C11orf1Q9H5F2 150 aa9.67□□□□□ -0.86
CLK3-224ENST00000568605 NRN1Q9NPD7 142 aa9.67□□□□□ -0.86
CLK3-224ENST00000568605 UQCC1Q9NVA1 299 aa9.67□□□□□ -0.86
CLK3-224ENST00000568605 RBMY1BA6NDE4 496 aaKnown RBP9.66□□□□□ -0.86
CLK3-224ENST00000568605 RBMY1EA6NEQ0 496 aaKnown RBP9.66□□□□□ -0.86
CLK3-224ENST00000568605 FAM24AA6NFZ4 105 aa9.66□□□□□ -0.86
CLK3-224ENST00000568605 K7EQG2 157 aa9.66□□□□□ -0.86
CLK3-224ENST00000568605 RBMY1DP0C7P1 496 aaKnown RBP9.66□□□□□ -0.86
CLK3-224ENST00000568605 ORM2P19652 201 aa9.66□□□□□ -0.86
CLK3-224ENST00000568605 S100A11P31949 105 aa9.66□□□□□ -0.86
CLK3-224ENST00000568605 SNRPD3P62318 126 aaKnown RBP9.66□□□□□ -0.86
CLK3-224ENST00000568605 RGS21Q2M5E4 152 aa9.66□□□□□ -0.86
CLK3-224ENST00000568605 PXDC1Q5TGL8 231 aa9.66□□□□□ -0.86
CLK3-224ENST00000568605 LINC00322Q6ZN03 302 aaPredicted RBP9.66□□□□□ -0.86
CLK3-224ENST00000568605 OR8I2Q8N0Y5 310 aa9.66□□□□□ -0.86
CLK3-224ENST00000568605 TMEM252Q8N6L7 170 aa9.66□□□□□ -0.86
CLK3-224ENST00000568605 TMEM217Q8N7C4 229 aa9.66□□□□□ -0.86
CLK3-224ENST00000568605 OR1B1Q8NGR6 318 aa9.66□□□□□ -0.86
CLK3-224ENST00000568605 GPR82Q96P67 336 aa9.66□□□□□ -0.86
CLK3-224ENST00000568605 ALG5Q9Y673 324 aa9.66□□□□□ -0.86
CLK3-224ENST00000568605 STAB2Q8WWQ8 2551 aa9.66□□□□□ -0.86
CLK3-224ENST00000568605 GALR1P47211 349 aa9.65□□□□□ -0.86
CLK3-224ENST00000568605 MEOX2P50222 304 aa9.65□□□□□ -0.86
CLK3-224ENST00000568605 H2BFSP57053 126 aa9.65□□□□□ -0.86
CLK3-224ENST00000568605 BAXQ07812 192 aa9.65□□□□□ -0.86
CLK3-224ENST00000568605 ATP6V1FQ16864 119 aa9.65□□□□□ -0.86
CLK3-224ENST00000568605 STPG3Q8N7X2 389 aa9.65□□□□□ -0.86
CLK3-224ENST00000568605 DCANP1Q8TF63 244 aa9.65□□□□□ -0.86
CLK3-224ENST00000568605 PPP1R1CQ8WVI7 109 aa9.65□□□□□ -0.86
CLK3-224ENST00000568605 SEPSECSQ9HD40 501 aaKnown RBP9.65□□□□□ -0.86
CLK3-224ENST00000568605 HIGD1AQ9Y241 93 aa9.65□□□□□ -0.86
CLK3-224ENST00000568605 HUWE1Q7Z6Z7 4374 aaKnown RBP9.65□□□□□ -0.87
CLK3-224ENST00000568605 TENM3Q9P273 2699 aa9.64□□□□□ -0.87
CLK3-224ENST00000568605 KIR2DL5BA0A0G2JN68 375 aa9.64□□□□□ -0.87
CLK3-224ENST00000568605 KIR2DL5BA0A0G2JPC4 375 aa9.64□□□□□ -0.87
CLK3-224ENST00000568605 UBE2L5PA0A1B0GUS4 154 aa9.64□□□□□ -0.87
CLK3-224ENST00000568605 IGSF23A1L1A6 192 aa9.64□□□□□ -0.87
CLK3-224ENST00000568605 UBE2CO00762 179 aa9.64□□□□□ -0.87
CLK3-224ENST00000568605 AGPAT2O15120 278 aa9.64□□□□□ -0.87
CLK3-224ENST00000568605 HYPMO75409 117 aa9.64□□□□□ -0.87
CLK3-224ENST00000568605 OR5G3P0C626 314 aa9.64□□□□□ -0.87
CLK3-224ENST00000568605 GATA2P23769 480 aaPredicted RBP9.64□□□□□ -0.87
CLK3-224ENST00000568605 DEFB131AP59861 70 aa9.64□□□□□ -0.87
CLK3-224ENST00000568605 PLP1P60201 277 aa9.64□□□□□ -0.87
CLK3-224ENST00000568605 ARL16Q0P5N6 197 aa9.64□□□□□ -0.87
CLK3-224ENST00000568605 APRG1Q8IVJ8 170 aa9.64□□□□□ -0.87
CLK3-224ENST00000568605 KIR2DL5AQ8N109 375 aa9.64□□□□□ -0.87
CLK3-224ENST00000568605 KIR2DL5BQ8NHK3 375 aa9.64□□□□□ -0.87
CLK3-224ENST00000568605 MED28Q9H204 178 aa9.64□□□□□ -0.87
CLK3-224ENST00000568605 SLC25A22Q9H936 323 aa9.64□□□□□ -0.87
CLK3-224ENST00000568605 ZNF98A6NK75 572 aa9.63□□□□□ -0.87
CLK3-224ENST00000568605 MPDU1O75352 247 aa9.63□□□□□ -0.87
CLK3-224ENST00000568605 ZNF688P0C7X2 276 aa9.63□□□□□ -0.87
CLK3-224ENST00000568605 ID1P41134 155 aa9.63□□□□□ -0.87
CLK3-224ENST00000568605 CAMLGP49069 296 aa9.63□□□□□ -0.87
CLK3-224ENST00000568605 EWSR1Q01844 656 aaKnown RBP eCLIP9.63□□□□□ -0.873e-7■□□□□ 11.1
CLK3-224ENST00000568605 VWC2Q2TAL6 325 aa9.63□□□□□ -0.87
CLK3-224ENST00000568605 STHQ8IWL8 128 aa9.63□□□□□ -0.87
CLK3-224ENST00000568605 CITED4Q96RK1 184 aa9.63□□□□□ -0.87
CLK3-224ENST00000568605 ARL6Q9H0F7 186 aa9.63□□□□□ -0.87
CLK3-224ENST00000568605 KCNIP2Q9NS61 270 aa9.63□□□□□ -0.87
CLK3-224ENST00000568605 DOK5Q9P104 306 aa9.63□□□□□ -0.87
CLK3-224ENST00000568605 H3BRN7 92 aa9.62□□□□□ -0.87
CLK3-224ENST00000568605 COX7A2P2O60397 106 aa9.62□□□□□ -0.87
CLK3-224ENST00000568605 MPC2O95563 127 aa9.62□□□□□ -0.87
CLK3-224ENST00000568605 RPL35AP18077 110 aaKnown RBP9.62□□□□□ -0.87
CLK3-224ENST00000568605 RPL7P18124 248 aaKnown RBP9.62□□□□□ -0.87
CLK3-224ENST00000568605 PSMB3P49720 205 aa9.62□□□□□ -0.87
CLK3-224ENST00000568605 PSMG4Q5JS54 123 aa9.62□□□□□ -0.87
CLK3-224ENST00000568605 LEMD1Q68G75 181 aa9.62□□□□□ -0.87
CLK3-224ENST00000568605 TMEM182Q6ZP80 229 aaPredicted RBP9.62□□□□□ -0.87
CLK3-224ENST00000568605 Q6ZRG5 221 aa9.62□□□□□ -0.87
CLK3-224ENST00000568605 Q6ZWC4 215 aa9.62□□□□□ -0.87
CLK3-224ENST00000568605 OR5C1Q8NGR4 320 aa9.62□□□□□ -0.87
CLK3-224ENST00000568605 ASB13Q8WXK3 278 aa9.62□□□□□ -0.87
CLK3-224ENST00000568605 PFDN5Q99471 154 aa9.62□□□□□ -0.87
CLK3-224ENST00000568605 MGST2Q99735 147 aa9.62□□□□□ -0.87
CLK3-224ENST00000568605 SHANK2-AS3Q9BTD1 123 aa9.62□□□□□ -0.87
CLK3-224ENST00000568605 SLC25A39Q9BZJ4 359 aaPredicted RBP9.62□□□□□ -0.87
CLK3-224ENST00000568605 OR5AC2Q9NZP5 309 aa9.62□□□□□ -0.87
CLK3-224ENST00000568605 WDR83OSQ9Y284 106 aa9.62□□□□□ -0.87
CLK3-224ENST00000568605 ATF4P18848 351 aaPredicted RBP9.61□□□□□ -0.87
CLK3-224ENST00000568605 FGF7P21781 194 aa9.61□□□□□ -0.87
CLK3-224ENST00000568605 FAM24BQ8N5W8 94 aa9.61□□□□□ -0.87
CLK3-224ENST00000568605 OR1L4Q8NGR5 311 aa9.61□□□□□ -0.87
CLK3-224ENST00000568605 THAP6Q8TBB0 222 aa9.61□□□□□ -0.87
CLK3-224ENST00000568605 SCRT1Q9BWW7 348 aa9.61□□□□□ -0.87
CLK3-224ENST00000568605 ARV1Q9H2C2 271 aa9.61□□□□□ -0.87
CLK3-224ENST00000568605 SLC25A32Q9H2D1 315 aa9.61□□□□□ -0.87
CLK3-224ENST00000568605 TP53TG1Q9Y2A0 90 aa9.61□□□□□ -0.87
CLK3-224ENST00000568605 ELOA3CA0A087WX78 387 aaPredicted RBP9.6□□□□□ -0.87
CLK3-224ENST00000568605 ISLRO14498 428 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 125.9 ms