RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 AP3S2P59780 193 aa11.54□□□□□ -0.56
CLN3-229ENST00000567963 FOXI2Q6ZQN5 318 aa11.54□□□□□ -0.56
CLN3-229ENST00000567963 IGKV3-20P01619 116 aa11.53□□□□□ -0.56
CLN3-229ENST00000567963 IAPPP10997 89 aa11.53□□□□□ -0.56
CLN3-229ENST00000567963 FXYD7P58549 80 aa11.53□□□□□ -0.56
CLN3-229ENST00000567963 OR2F1Q13607 317 aa11.53□□□□□ -0.56
CLN3-229ENST00000567963 PYDC2Q56P42 97 aa11.53□□□□□ -0.56
CLN3-229ENST00000567963 ZNF709Q8N972 641 aa11.53□□□□□ -0.56
CLN3-229ENST00000567963 CLUHP3Q96NS8 147 aa11.53□□□□□ -0.56
CLN3-229ENST00000567963 SMIM9A6NGZ8 99 aa11.52□□□□□ -0.56
CLN3-229ENST00000567963 MED6O75586 246 aa11.52□□□□□ -0.56
CLN3-229ENST00000567963 AMBPP02760 352 aa11.52□□□□□ -0.56
CLN3-229ENST00000567963 VAMP1P23763 118 aa11.52□□□□□ -0.56
CLN3-229ENST00000567963 GSG1LQ6UXU4 331 aa11.52□□□□□ -0.56
CLN3-229ENST00000567963 OR8I2Q8N0Y5 310 aa11.52□□□□□ -0.56
CLN3-229ENST00000567963 THAP8Q8NA92 274 aa11.52□□□□□ -0.56
CLN3-229ENST00000567963 COQ8AQ8NI60 647 aa11.52□□□□□ -0.56
CLN3-229ENST00000567963 PPP1R14BQ96C90 147 aa11.52□□□□□ -0.56
CLN3-229ENST00000567963 SLC25A21Q9BQT8 299 aaPredicted RBP11.52□□□□□ -0.56
CLN3-229ENST00000567963 PAIP2BQ9ULR5 123 aaKnown RBP11.52□□□□□ -0.56
CLN3-229ENST00000567963 TMED3Q9Y3Q3 217 aa11.52□□□□□ -0.56
CLN3-229ENST00000567963 RPP30P78346 268 aaKnown RBP11.51□□□□□ -0.57
CLN3-229ENST00000567963 ZNF79Q15937 498 aa11.51□□□□□ -0.57
CLN3-229ENST00000567963 SPATA31B1PQ5VZV4 182 aa11.51□□□□□ -0.57
CLN3-229ENST00000567963 OR4B1Q8NGF8 309 aa11.51□□□□□ -0.57
CLN3-229ENST00000567963 DEDD2Q8WXF8 326 aa11.51□□□□□ -0.57
CLN3-229ENST00000567963 CIB3Q96Q77 187 aaPredicted RBP11.51□□□□□ -0.57
CLN3-229ENST00000567963 SCRT1Q9BWW7 348 aa11.51□□□□□ -0.57
CLN3-229ENST00000567963 IGHV3OR16-12A0A075B7B8 117 aa11.51□□□□□ -0.57
CLN3-229ENST00000567963 TMEM189A5PLL7 270 aa11.51□□□□□ -0.57
CLN3-229ENST00000567963 PRSS46E5RG02 174 aa11.51□□□□□ -0.57
CLN3-229ENST00000567963 ISLRO14498 428 aa11.51□□□□□ -0.57
CLN3-229ENST00000567963 SYNGR2O43760 224 aa11.51□□□□□ -0.57
CLN3-229ENST00000567963 SFT2D2O95562 160 aa11.51□□□□□ -0.57
CLN3-229ENST00000567963 CFDP00746 253 aaPredicted RBP11.51□□□□□ -0.57
CLN3-229ENST00000567963 SPART-AS1P0CW21 52 aa11.51□□□□□ -0.57
CLN3-229ENST00000567963 PAX9P55771 341 aa11.51□□□□□ -0.57
CLN3-229ENST00000567963 PPP1R1AQ13522 171 aa11.51□□□□□ -0.57
CLN3-229ENST00000567963 SPANXN2Q5MJ10 180 aa11.51□□□□□ -0.57
CLN3-229ENST00000567963 GGNBP1Q5YKI7 109 aa11.51□□□□□ -0.57
CLN3-229ENST00000567963 S100ZQ8WXG8 99 aa11.51□□□□□ -0.57
CLN3-229ENST00000567963 NDUFAF3Q9BU61 184 aa11.51□□□□□ -0.57
CLN3-229ENST00000567963 MAGT1Q9H0U3 335 aa11.51□□□□□ -0.57
CLN3-229ENST00000567963 F6UB75 175 aa11.5□□□□□ -0.57
CLN3-229ENST00000567963 WRBO00258 174 aa11.5□□□□□ -0.57
CLN3-229ENST00000567963 EMP1P54849 157 aa11.5□□□□□ -0.57
CLN3-229ENST00000567963 FAM78BQ5VT40 261 aa11.5□□□□□ -0.57
CLN3-229ENST00000567963 EBLN2Q6P2I7 272 aa11.5□□□□□ -0.57
CLN3-229ENST00000567963 SLC35B3Q9H1N7 401 aa11.5□□□□□ -0.57
CLN3-229ENST00000567963 A0A0J9YX75 114 aa11.49□□□□□ -0.57
CLN3-229ENST00000567963 HOXB5P09067 269 aa11.49□□□□□ -0.57
CLN3-229ENST00000567963 P0DMU3 169 aa11.49□□□□□ -0.57
CLN3-229ENST00000567963 FAM231AP0DMU4 169 aa11.49□□□□□ -0.57
CLN3-229ENST00000567963 FAM231CP0DMU5 169 aa11.49□□□□□ -0.57
CLN3-229ENST00000567963 MEOX2P50222 304 aa11.49□□□□□ -0.57
CLN3-229ENST00000567963 PSG9Q00887 426 aa11.49□□□□□ -0.57
CLN3-229ENST00000567963 SAMD13Q5VXD3 122 aa11.49□□□□□ -0.57
CLN3-229ENST00000567963 POM121L12Q8N7R1 296 aa11.49□□□□□ -0.57
CLN3-229ENST00000567963 C17orf77Q96MU5 243 aa11.49□□□□□ -0.57
CLN3-229ENST00000567963 SRRQ9GZT4 340 aa11.49□□□□□ -0.57
CLN3-229ENST00000567963 RPRMQ9NS64 109 aa11.49□□□□□ -0.57
CLN3-229ENST00000567963 SLC45A2Q9UMX9 530 aa11.49□□□□□ -0.57
CLN3-229ENST00000567963 RFNGQ9Y644 331 aa11.49□□□□□ -0.57
CLN3-229ENST00000567963 HERC2O95714 4834 aa11.48□□□□□ -0.57
CLN3-229ENST00000567963 ZNF98A6NK75 572 aa11.48□□□□□ -0.57
CLN3-229ENST00000567963 GALR1P47211 349 aa11.48□□□□□ -0.57
CLN3-229ENST00000567963 SPANXN5Q5MJ07 72 aa11.48□□□□□ -0.57
CLN3-229ENST00000567963 TMEM182Q6ZP80 229 aaPredicted RBP11.48□□□□□ -0.57
CLN3-229ENST00000567963 C16orf92Q96LL3 132 aa11.48□□□□□ -0.57
CLN3-229ENST00000567963 C20orf173Q96LM9 149 aa11.48□□□□□ -0.57
CLN3-229ENST00000567963 SLC25A32Q9H2D1 315 aa11.48□□□□□ -0.57
CLN3-229ENST00000567963 SLC25A22Q9H936 323 aa11.48□□□□□ -0.57
CLN3-229ENST00000567963 DKK2Q9UBU2 259 aa11.48□□□□□ -0.57
CLN3-229ENST00000567963 DNAH2Q9P225 4427 aa11.47□□□□□ -0.57
CLN3-229ENST00000567963 GATA2P23769 480 aaPredicted RBP11.47□□□□□ -0.57
CLN3-229ENST00000567963 C1orf158Q8N1D5 194 aa11.47□□□□□ -0.57
CLN3-229ENST00000567963 BPIFCQ8NFQ6 507 aa11.47□□□□□ -0.57
CLN3-229ENST00000567963 OR4D5Q8NGN0 318 aa11.47□□□□□ -0.57
CLN3-229ENST00000567963 SDHCQ99643 169 aaPredicted RBP11.47□□□□□ -0.57
CLN3-229ENST00000567963 RSG1Q9BU20 258 aa11.47□□□□□ -0.57
CLN3-229ENST00000567963 KRTAP17-1Q9BYP8 105 aa11.47□□□□□ -0.57
CLN3-229ENST00000567963 FAT2Q9NYQ8 4349 aa11.47□□□□□ -0.57
CLN3-229ENST00000567963 ORM2P19652 201 aa11.46□□□□□ -0.57
CLN3-229ENST00000567963 FAM222AQ5U5X8 452 aa11.46□□□□□ -0.57
CLN3-229ENST00000567963 LINC00336Q6ZUF6 198 aa11.46□□□□□ -0.57
CLN3-229ENST00000567963 NIPSNAP3BQ9BS92 247 aa11.46□□□□□ -0.57
CLN3-229ENST00000567963 DOK5Q9P104 306 aa11.46□□□□□ -0.57
CLN3-229ENST00000567963 GOLT1BQ9Y3E0 138 aa11.46□□□□□ -0.57
CLN3-229ENST00000567963 STRAPQ9Y3F4 350 aaKnown RBP11.46□□□□□ -0.57
CLN3-229ENST00000567963 TEX48A0A1B0GUV7 120 aa11.45□□□□□ -0.58
CLN3-229ENST00000567963 H3BP45 60 aa11.45□□□□□ -0.58
CLN3-229ENST00000567963 ID3Q02535 119 aa11.45□□□□□ -0.58
CLN3-229ENST00000567963 AKR1C1Q04828 323 aa11.45□□□□□ -0.58
CLN3-229ENST00000567963 ZNF846Q147U1 533 aa11.45□□□□□ -0.58
CLN3-229ENST00000567963 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.45□□□□□ -0.58
CLN3-229ENST00000567963 OR1B1Q8NGR6 318 aa11.45□□□□□ -0.58
CLN3-229ENST00000567963 GPR82Q96P67 336 aa11.45□□□□□ -0.58
CLN3-229ENST00000567963 C7orf50Q9BRJ6 194 aaKnown RBP11.45□□□□□ -0.58
CLN3-229ENST00000567963 PLA2G2EQ9NZK7 142 aa11.45□□□□□ -0.58
CLN3-229ENST00000567963 A8MTW9 85 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms