RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 K7EQG2 157 aa6.81□□□□□ -1.32
VPS35-206ENST00000565228 SOCS3O14543 225 aa6.81□□□□□ -1.32
VPS35-206ENST00000565228 SSNA1O43805 119 aa6.81□□□□□ -1.32
VPS35-206ENST00000565228 MPC2O95563 127 aa6.81□□□□□ -1.32
VPS35-206ENST00000565228 PRB4P10163 310 aaPredicted RBP6.81□□□□□ -1.32
VPS35-206ENST00000565228 LYL1P12980 280 aa6.81□□□□□ -1.32
VPS35-206ENST00000565228 BCAP31P51572 246 aa6.81□□□□□ -1.32
VPS35-206ENST00000565228 CAV2P51636 162 aa6.81□□□□□ -1.32
VPS35-206ENST00000565228 RPP30P78346 268 aaKnown RBP6.81□□□□□ -1.32
VPS35-206ENST00000565228 EWSR1Q01844 656 aaKnown RBP eCLIP6.81□□□□□ -1.32
VPS35-206ENST00000565228 AKR1C1Q04828 323 aa6.81□□□□□ -1.32
VPS35-206ENST00000565228 LEMD1Q68G75 181 aa6.81□□□□□ -1.32
VPS35-206ENST00000565228 BPIFCQ8NFQ6 507 aa6.81□□□□□ -1.32
VPS35-206ENST00000565228 OR10P1Q8NGE3 313 aa6.81□□□□□ -1.32
VPS35-206ENST00000565228 METTL26Q96S19 204 aa6.81□□□□□ -1.32
VPS35-206ENST00000565228 TM2D3Q9BRN9 247 aa6.81□□□□□ -1.32
VPS35-206ENST00000565228 GINS3Q9BRX5 216 aa6.81□□□□□ -1.32
VPS35-206ENST00000565228 PBDC1Q9BVG4 233 aa6.81□□□□□ -1.32
VPS35-206ENST00000565228 SCRT1Q9BWW7 348 aa6.81□□□□□ -1.32
VPS35-206ENST00000565228 MAP6D1Q9H9H5 199 aa6.81□□□□□ -1.32
VPS35-206ENST00000565228 DOK5Q9P104 306 aa6.81□□□□□ -1.32
VPS35-206ENST00000565228 ZMAT5Q9UDW3 170 aaKnown RBP6.81□□□□□ -1.32
VPS35-206ENST00000565228 DNAH1Q9P2D7 4330 aa6.81□□□□□ -1.32
VPS35-206ENST00000565228 H3BRN7 92 aa6.8□□□□□ -1.32
VPS35-206ENST00000565228 L7N2F9 121 aa6.8□□□□□ -1.32
VPS35-206ENST00000565228 AGPAT2O15120 278 aa6.8□□□□□ -1.32
VPS35-206ENST00000565228 MRPS12O15235 138 aaKnown RBP6.8□□□□□ -1.32
VPS35-206ENST00000565228 GIG44P09565 113 aaPredicted RBP6.8□□□□□ -1.32
VPS35-206ENST00000565228 EIF2B2P49770 351 aaKnown RBP6.8□□□□□ -1.32
VPS35-206ENST00000565228 SULT1A1P50225 295 aa6.8□□□□□ -1.32
VPS35-206ENST00000565228 PLP1P60201 277 aa6.8□□□□□ -1.32
VPS35-206ENST00000565228 VAMP2P63027 116 aa6.8□□□□□ -1.32
VPS35-206ENST00000565228 TMEM37Q8WXS4 190 aa6.8□□□□□ -1.32
VPS35-206ENST00000565228 C20orf173Q96LM9 149 aa6.8□□□□□ -1.32
VPS35-206ENST00000565228 UHRF2Q96PU4 802 aa6.8□□□□□ -1.32
VPS35-206ENST00000565228 GGTLC1Q9BX51 225 aa6.8□□□□□ -1.32
VPS35-206ENST00000565228 SLC25A32Q9H2D1 315 aa6.8□□□□□ -1.32
VPS35-206ENST00000565228 NPVFQ9HCQ7 196 aa6.8□□□□□ -1.32
VPS35-206ENST00000565228 MBD2Q9UBB5 411 aa6.8□□□□□ -1.32
VPS35-206ENST00000565228 RABAC1Q9UI14 185 aa6.8□□□□□ -1.32
VPS35-206ENST00000565228 WDR83OSQ9Y284 106 aa6.8□□□□□ -1.32
VPS35-206ENST00000565228 HYDINQ4G0P3 5121 aa6.79□□□□□ -1.32
VPS35-206ENST00000565228 FNDC10F2Z333 226 aa6.79□□□□□ -1.32
VPS35-206ENST00000565228 ORM2P19652 201 aa6.79□□□□□ -1.32
VPS35-206ENST00000565228 RGS21Q2M5E4 152 aa6.79□□□□□ -1.32
VPS35-206ENST00000565228 GCSAMLQ5JQS6 135 aa6.79□□□□□ -1.32
VPS35-206ENST00000565228 MIC13Q5XKP0 118 aa6.79□□□□□ -1.32
VPS35-206ENST00000565228 IGFL4Q6B9Z1 124 aa6.79□□□□□ -1.32
VPS35-206ENST00000565228 GTSCR1Q86UQ5 136 aa6.79□□□□□ -1.32
VPS35-206ENST00000565228 FAM110AQ9BQ89 295 aa6.79□□□□□ -1.32
VPS35-206ENST00000565228 GGACTQ9BVM4 153 aa6.79□□□□□ -1.32
VPS35-206ENST00000565228 TRAV8-2A0A0B4J237 113 aa6.78□□□□□ -1.32
VPS35-206ENST00000565228 TRAV5A0A0B4J249 113 aa6.78□□□□□ -1.32
VPS35-206ENST00000565228 UBE2L5PA0A1B0GUS4 154 aa6.78□□□□□ -1.32
VPS35-206ENST00000565228 ZNF98A6NK75 572 aa6.78□□□□□ -1.32
VPS35-206ENST00000565228 KNCNA6PVL3 124 aa6.78□□□□□ -1.32
VPS35-206ENST00000565228 E5RGE8 158 aa6.78□□□□□ -1.32
VPS35-206ENST00000565228 SMLR1H3BR10 107 aa6.78□□□□□ -1.32
VPS35-206ENST00000565228 SNRPCP09234 159 aaKnown RBP6.78□□□□□ -1.32
VPS35-206ENST00000565228 ZNF688P0C7X2 276 aa6.78□□□□□ -1.32
VPS35-206ENST00000565228 RPL35AP18077 110 aaKnown RBP6.78□□□□□ -1.32
VPS35-206ENST00000565228 HLA-DMBP28068 263 aa6.78□□□□□ -1.32
VPS35-206ENST00000565228 DEFB131AP59861 70 aa6.78□□□□□ -1.32
VPS35-206ENST00000565228 OPCMLQ14982 345 aa6.78□□□□□ -1.32
VPS35-206ENST00000565228 GDF5OSQ5U4N7 250 aa6.78□□□□□ -1.32
VPS35-206ENST00000565228 LAMTOR1Q6IAA8 161 aa6.78□□□□□ -1.32
VPS35-206ENST00000565228 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa6.78□□□□□ -1.32
VPS35-206ENST00000565228 SIGLEC15Q6ZMC9 328 aa6.78□□□□□ -1.32
VPS35-206ENST00000565228 STXBP6Q8NFX7 210 aa6.78□□□□□ -1.32
VPS35-206ENST00000565228 OR5C1Q8NGR4 320 aa6.78□□□□□ -1.32
VPS35-206ENST00000565228 OR1B1Q8NGR6 318 aa6.78□□□□□ -1.32
VPS35-206ENST00000565228 THAP6Q8TBB0 222 aa6.78□□□□□ -1.32
VPS35-206ENST00000565228 SLC25A39Q9BZJ4 359 aaPredicted RBP6.78□□□□□ -1.32
VPS35-206ENST00000565228 TRAV2A0A0B4J234 112 aa6.77□□□□□ -1.33
VPS35-206ENST00000565228 EIF3GO75821 320 aaKnown RBP eCLIP6.77□□□□□ -1.33
VPS35-206ENST00000565228 SMCPP49901 116 aaPredicted RBP6.77□□□□□ -1.33
VPS35-206ENST00000565228 CLINT1Q14677 625 aa6.77□□□□□ -1.33
VPS35-206ENST00000565228 SPATA31B1PQ5VZV4 182 aa6.77□□□□□ -1.33
VPS35-206ENST00000565228 TEPPQ6URK8 271 aa6.77□□□□□ -1.33
VPS35-206ENST00000565228 SHANK2-AS3Q9BTD1 123 aa6.77□□□□□ -1.33
VPS35-206ENST00000565228 TMEM147Q9BVK8 224 aa6.77□□□□□ -1.33
VPS35-206ENST00000565228 SMIM3Q9BZL3 60 aa6.77□□□□□ -1.33
VPS35-206ENST00000565228 ARL6Q9H0F7 186 aa6.77□□□□□ -1.33
VPS35-206ENST00000565228 MED28Q9H204 178 aa6.77□□□□□ -1.33
VPS35-206ENST00000565228 UQCC1Q9NVA1 299 aa6.77□□□□□ -1.33
VPS35-206ENST00000565228 HSPB11Q9Y547 144 aa6.77□□□□□ -1.33
VPS35-206ENST00000565228 PLECQ15149 4684 aaKnown RBP6.77□□□□□ -1.33
VPS35-206ENST00000565228 RYR1P21817 5038 aa6.76□□□□□ -1.33
VPS35-206ENST00000565228 A0A1W2PS18 150 aa6.76□□□□□ -1.33
VPS35-206ENST00000565228 RNF222A6NCQ9 220 aa6.76□□□□□ -1.33
VPS35-206ENST00000565228 OR4C46A6NHA9 309 aa6.76□□□□□ -1.33
VPS35-206ENST00000565228 PVALBP20472 110 aaPredicted RBP6.76□□□□□ -1.33
VPS35-206ENST00000565228 C4BPBP20851 252 aa6.76□□□□□ -1.33
VPS35-206ENST00000565228 FGF7P21781 194 aa6.76□□□□□ -1.33
VPS35-206ENST00000565228 S100A11P31949 105 aa6.76□□□□□ -1.33
VPS35-206ENST00000565228 CAMLGP49069 296 aa6.76□□□□□ -1.33
VPS35-206ENST00000565228 RPL11P62913 178 aaKnown RBP6.76□□□□□ -1.33
VPS35-206ENST00000565228 CYCSP99999 105 aaKnown RBP6.76□□□□□ -1.33
VPS35-206ENST00000565228 RCHY1Q96PM5 261 aa6.76□□□□□ -1.33
VPS35-206ENST00000565228 OVOL2Q9BRP0 275 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms