RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 CELA1Q9UNI1 258 aa12.38□□□□□ -0.43
VPS9D1-203ENST00000563798 IGHV4-4A0A075B6R2 117 aa12.37□□□□□ -0.43
VPS9D1-203ENST00000563798 SMIM9A6NGZ8 99 aa12.37□□□□□ -0.43
VPS9D1-203ENST00000563798 ISLRO14498 428 aa12.37□□□□□ -0.43
VPS9D1-203ENST00000563798 SYNGR2O43760 224 aa12.37□□□□□ -0.43
VPS9D1-203ENST00000563798 IAPPP10997 89 aa12.37□□□□□ -0.43
VPS9D1-203ENST00000563798 PAX9P55771 341 aa12.37□□□□□ -0.43
VPS9D1-203ENST00000563798 LYZP61626 148 aa12.37□□□□□ -0.43
VPS9D1-203ENST00000563798 RPP30P78346 268 aaKnown RBP12.37□□□□□ -0.43
VPS9D1-203ENST00000563798 PPP1R1AQ13522 171 aa12.37□□□□□ -0.43
VPS9D1-203ENST00000563798 GDF5OSQ5U4N7 250 aa12.37□□□□□ -0.43
VPS9D1-203ENST00000563798 DNAH6Q9C0G6 4158 aa12.37□□□□□ -0.43
VPS9D1-203ENST00000563798 AMBPP02760 352 aa12.36□□□□□ -0.43
VPS9D1-203ENST00000563798 S100A5P33763 92 aa12.36□□□□□ -0.43
VPS9D1-203ENST00000563798 UBE2MP61081 183 aaKnown RBP12.36□□□□□ -0.43
VPS9D1-203ENST00000563798 GGNBP1Q5YKI7 109 aa12.36□□□□□ -0.43
VPS9D1-203ENST00000563798 ZNF709Q8N972 641 aa12.36□□□□□ -0.43
VPS9D1-203ENST00000563798 TMEM189A5PLL7 270 aa12.35□□□□□ -0.43
VPS9D1-203ENST00000563798 MEOX2P50222 304 aa12.35□□□□□ -0.43
VPS9D1-203ENST00000563798 OR2F1Q13607 317 aa12.35□□□□□ -0.43
VPS9D1-203ENST00000563798 OR8I2Q8N0Y5 310 aa12.35□□□□□ -0.43
VPS9D1-203ENST00000563798 LINC00052Q96N35 136 aa12.35□□□□□ -0.43
VPS9D1-203ENST00000563798 RBM38Q9H0Z9 239 aaKnown RBP12.35□□□□□ -0.43
VPS9D1-203ENST00000563798 DEFB131BA0A096LNP1 70 aa12.34□□□□□ -0.43
VPS9D1-203ENST00000563798 A8MTW9 85 aa12.34□□□□□ -0.43
VPS9D1-203ENST00000563798 DEFB1P60022 68 aa12.34□□□□□ -0.43
VPS9D1-203ENST00000563798 ID3Q02535 119 aa12.34□□□□□ -0.43
VPS9D1-203ENST00000563798 OR4D5Q8NGN0 318 aa12.34□□□□□ -0.43
VPS9D1-203ENST00000563798 COQ8AQ8NI60 647 aa12.34□□□□□ -0.43
VPS9D1-203ENST00000563798 C17orf77Q96MU5 243 aa12.34□□□□□ -0.43
VPS9D1-203ENST00000563798 ZNF701M0R085 212 aaPredicted RBP12.33□□□□□ -0.44
VPS9D1-203ENST00000563798 WRBO00258 174 aa12.33□□□□□ -0.44
VPS9D1-203ENST00000563798 HOXB5P09067 269 aa12.33□□□□□ -0.44
VPS9D1-203ENST00000563798 PPP1R14BQ96C90 147 aa12.33□□□□□ -0.44
VPS9D1-203ENST00000563798 SRRQ9GZT4 340 aa12.33□□□□□ -0.44
VPS9D1-203ENST00000563798 MAGT1Q9H0U3 335 aa12.33□□□□□ -0.44
VPS9D1-203ENST00000563798 A0A0J9YX75 114 aa12.32□□□□□ -0.44
VPS9D1-203ENST00000563798 ZNF98A6NK75 572 aa12.32□□□□□ -0.44
VPS9D1-203ENST00000563798 SPART-AS1P0CW21 52 aa12.32□□□□□ -0.44
VPS9D1-203ENST00000563798 GALR1P47211 349 aa12.32□□□□□ -0.44
VPS9D1-203ENST00000563798 PSG9Q00887 426 aa12.32□□□□□ -0.44
VPS9D1-203ENST00000563798 BPIFCQ8NFQ6 507 aa12.32□□□□□ -0.44
VPS9D1-203ENST00000563798 GPR82Q96P67 336 aa12.32□□□□□ -0.44
VPS9D1-203ENST00000563798 SLC25A32Q9H2D1 315 aa12.32□□□□□ -0.44
VPS9D1-203ENST00000563798 PAIP2BQ9ULR5 123 aaKnown RBP12.32□□□□□ -0.44
VPS9D1-203ENST00000563798 STRAPQ9Y3F4 350 aaKnown RBP12.32□□□□□ -0.44
VPS9D1-203ENST00000563798 RFNGQ9Y644 331 aa12.32□□□□□ -0.44
VPS9D1-203ENST00000563798 TEX48A0A1B0GUV7 120 aa12.31□□□□□ -0.44
VPS9D1-203ENST00000563798 C9orf170A2RU37 121 aa12.31□□□□□ -0.44
VPS9D1-203ENST00000563798 NAP1L6A6NFF2 107 aa12.31□□□□□ -0.44
VPS9D1-203ENST00000563798 NDUFB6O95139 128 aa12.31□□□□□ -0.44
VPS9D1-203ENST00000563798 IGKV3-20P01619 116 aa12.31□□□□□ -0.44
VPS9D1-203ENST00000563798 S100A7P31151 101 aa12.31□□□□□ -0.44
VPS9D1-203ENST00000563798 SPANXN5Q5MJ07 72 aa12.31□□□□□ -0.44
VPS9D1-203ENST00000563798 SPANXN2Q5MJ10 180 aa12.31□□□□□ -0.44
VPS9D1-203ENST00000563798 FAM78BQ5VT40 261 aa12.31□□□□□ -0.44
VPS9D1-203ENST00000563798 EBLN2Q6P2I7 272 aa12.31□□□□□ -0.44
VPS9D1-203ENST00000563798 TMEM182Q6ZP80 229 aaPredicted RBP12.31□□□□□ -0.44
VPS9D1-203ENST00000563798 ZNF767PQ75MW2 155 aa12.31□□□□□ -0.44
VPS9D1-203ENST00000563798 TMEM144Q7Z5S9 345 aa12.31□□□□□ -0.44
VPS9D1-203ENST00000563798 OR4B1Q8NGF8 309 aa12.31□□□□□ -0.44
VPS9D1-203ENST00000563798 OR1B1Q8NGR6 318 aa12.31□□□□□ -0.44
VPS9D1-203ENST00000563798 RPRMQ9NS64 109 aa12.31□□□□□ -0.44
VPS9D1-203ENST00000563798 HERC2O95714 4834 aa12.31□□□□□ -0.44
VPS9D1-203ENST00000563798 FXYD7P58549 80 aa12.3□□□□□ -0.44
VPS9D1-203ENST00000563798 OXA1LQ15070 435 aa12.3□□□□□ -0.44
VPS9D1-203ENST00000563798 C1orf158Q8N1D5 194 aa12.3□□□□□ -0.44
VPS9D1-203ENST00000563798 FAM210BQ96KR6 192 aa12.3□□□□□ -0.44
VPS9D1-203ENST00000563798 C16orf92Q96LL3 132 aa12.3□□□□□ -0.44
VPS9D1-203ENST00000563798 C20orf173Q96LM9 149 aa12.3□□□□□ -0.44
VPS9D1-203ENST00000563798 NDUFAF3Q9BU61 184 aa12.3□□□□□ -0.44
VPS9D1-203ENST00000563798 SLC35B3Q9H1N7 401 aa12.3□□□□□ -0.44
VPS9D1-203ENST00000563798 DKK2Q9UBU2 259 aa12.3□□□□□ -0.44
VPS9D1-203ENST00000563798 HECTD4Q9Y4D8 3996 aa12.3□□□□□ -0.44
VPS9D1-203ENST00000563798 CCDC160A6NGH7 325 aa12.29□□□□□ -0.44
VPS9D1-203ENST00000563798 PMS2P5A8MQ11 134 aa12.29□□□□□ -0.44
VPS9D1-203ENST00000563798 F6UB75 175 aa12.29□□□□□ -0.44
VPS9D1-203ENST00000563798 ADAP1O75689 374 aa12.29□□□□□ -0.44
VPS9D1-203ENST00000563798 P0DMU3 169 aa12.29□□□□□ -0.44
VPS9D1-203ENST00000563798 FAM231AP0DMU4 169 aa12.29□□□□□ -0.44
VPS9D1-203ENST00000563798 FAM231CP0DMU5 169 aa12.29□□□□□ -0.44
VPS9D1-203ENST00000563798 GATA2P23769 480 aaPredicted RBP12.29□□□□□ -0.44
VPS9D1-203ENST00000563798 AMTNQ6UX39 209 aa12.29□□□□□ -0.44
VPS9D1-203ENST00000563798 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.29□□□□□ -0.44
VPS9D1-203ENST00000563798 ACOT7LQ6ZUV0 252 aa12.29□□□□□ -0.44
VPS9D1-203ENST00000563798 RSG1Q9BU20 258 aa12.29□□□□□ -0.44
VPS9D1-203ENST00000563798 SCRT1Q9BWW7 348 aa12.29□□□□□ -0.44
VPS9D1-203ENST00000563798 DOK5Q9P104 306 aa12.29□□□□□ -0.44
VPS9D1-203ENST00000563798 GOLT1BQ9Y3E0 138 aa12.29□□□□□ -0.44
VPS9D1-203ENST00000563798 ORM2P19652 201 aa12.28□□□□□ -0.44
VPS9D1-203ENST00000563798 PLP1P60201 277 aa12.28□□□□□ -0.44
VPS9D1-203ENST00000563798 POLR2GP62487 172 aaKnown RBP eCLIP12.28□□□□□ -0.44
VPS9D1-203ENST00000563798 AKR1C1Q04828 323 aa12.28□□□□□ -0.44
VPS9D1-203ENST00000563798 BAK1Q16611 211 aa12.28□□□□□ -0.44
VPS9D1-203ENST00000563798 POM121L12Q8N7R1 296 aa12.28□□□□□ -0.44
VPS9D1-203ENST00000563798 SMIM8Q96KF7 97 aa12.28□□□□□ -0.44
VPS9D1-203ENST00000563798 TMEM147Q9BVK8 224 aa12.28□□□□□ -0.44
VPS9D1-203ENST00000563798 SLC25A22Q9H936 323 aa12.28□□□□□ -0.44
VPS9D1-203ENST00000563798 FNDC10F2Z333 226 aa12.27□□□□□ -0.45
VPS9D1-203ENST00000563798 H3BP45 60 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms