RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 DYNLT3P51808 116 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 PLP1P60201 277 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 KRTDAPP60985 99 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 OR8B8Q15620 311 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 ZNF141Q15928 474 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 ZNF726P1Q15940 193 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 MPV17L2Q567V2 206 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 PSMG4Q5JS54 123 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 MRPL2Q5T653 305 aaKnown RBP1.94□□□□□ -2.1
VPS13C-208ENST00000559119 FAM78BQ5VT40 261 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 CARD17Q5XLA6 110 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 Q6ZS49 121 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 OLIG3Q7RTU3 272 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 LYZL2Q7Z4W2 148 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 S100A7AQ86SG5 101 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 OR8I2Q8N0Y5 310 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 FAM58AQ8N1B3 248 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 CDRT4Q8N9R6 151 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 NECAP1Q8NC96 275 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 ZNF439Q8NDP4 499 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 OR2Z1Q8NG97 314 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 OR5D14Q8NGL3 314 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 OR10G9Q8NGN4 311 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 OR5C1Q8NGR4 320 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 OR2K2Q8NGT1 345 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 VSTM2AQ8TAG5 236 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 SCGB1C1Q8TD33 95 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 ZNF418Q8TF45 676 aaPredicted RBP1.94□□□□□ -2.1
VPS13C-208ENST00000559119 RTN4IP1Q8WWV3 396 aaPredicted RBP1.94□□□□□ -2.1
VPS13C-208ENST00000559119 CACNG8Q8WXS5 425 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 FGF14Q92915 247 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 RAB1CQ92928 201 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 TIMD4Q96H15 378 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 SMIM10Q96HG1 83 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 DERL1Q9BUN8 251 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 TTTY10Q9BZA0 68 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 ULBP3Q9BZM4 244 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 WDR61Q9GZS3 305 aaKnown RBP1.94□□□□□ -2.1
VPS13C-208ENST00000559119 GEMIN7Q9H840 131 aaKnown RBP1.94□□□□□ -2.1
VPS13C-208ENST00000559119 ZNF160Q9HCG1 818 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 KCNIP2Q9NS61 270 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 RPRMQ9NS64 109 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 SLC39A9Q9NUM3 307 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 KCNIP1Q9NZI2 227 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 TAAR3PQ9P1P4 343 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 ERG28Q9UKR5 140 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 TRAPPC2LQ9UL33 140 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 BOKQ9UMX3 212 aaPredicted RBP1.94□□□□□ -2.1
VPS13C-208ENST00000559119 HS3ST2Q9Y278 367 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 SLC17A4Q9Y2C5 497 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 WASHC3Q9Y3C0 194 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 RFNGQ9Y644 331 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 ZNF780BQ9Y6R6 833 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 NUP210LQ5VU65 1888 aa1.94□□□□□ -2.1
VPS13C-208ENST00000559119 NUP214P35658 2090 aaPredicted RBP1.94□□□□□ -2.1
VPS13C-208ENST00000559119 IGLV1-36A0A0B4J1U3 117 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 MUC21A0A0G2JKD1 596 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 MUC21A0A140T8X8 626 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 C3orf85A0A1B0GTC6 90 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 A0A1B0GUS0 222 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 A0A1B0GV50 99 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 MDFIC2A0A1B0GVS7 189 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 C7orf71A4D174 169 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 GRIFINA4D1Z8 144 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 C2orf70A6NJV1 201 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 CD300LBA8K4G0 201 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 C9JCJ5 164 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP1.93□□□□□ -2.1
VPS13C-208ENST00000559119 SDCBPO00560 298 aaPredicted RBP1.93□□□□□ -2.1
VPS13C-208ENST00000559119 SOCS1O15524 211 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 XRCC2O43543 280 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 IGHMP01871 453 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 HLA-DQA1P01909 254 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 OR5AL1P0C617 328 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 CISD3P0C7P0 127 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 PMCHP20382 165 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 CCL1P22362 96 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 LEPP41159 167 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 PTGDSP41222 190 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 SSR2P43308 183 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 UBE2G1P62253 170 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 RPS24P62847 133 aaKnown RBP1.93□□□□□ -2.1
VPS13C-208ENST00000559119 HBG1P69891 147 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 HBG2P69892 147 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 ZNF90Q03938 601 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 PRDX1Q06830 199 aaKnown RBP1.93□□□□□ -2.1
VPS13C-208ENST00000559119 AESQ08117 197 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 PLCXD2Q0VAA5 305 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 SMAGPQ0VAQ4 97 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 KLRB1Q12918 225 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 C1orf61Q13536 156 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 GABRA6Q16445 453 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 LTC4SQ16873 150 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 TMEM97Q5BJF2 176 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 NMSQ5H8A3 153 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 TMEM42Q69YG0 159 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 RNASEKQ6P5S7 137 aaKnown RBP1.93□□□□□ -2.1
VPS13C-208ENST00000559119 GLIPR1L1Q6UWM5 242 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 LCN15Q6UWW0 184 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 Q6ZSR3 168 aa1.93□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms