RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 FAM215AQ9Y5M1 114 aa13.06□□□□□ -0.32
SHMT2-232ENST00000557487 PRR14LQ5THK1 2151 aa13.06□□□□□ -0.32
SHMT2-232ENST00000557487 A0A1B0GW15 77 aa13.05□□□□□ -0.32
SHMT2-232ENST00000557487 C22orf46C9J442 243 aa13.05□□□□□ -0.32
SHMT2-232ENST00000557487 CHEK1O14757 476 aa13.05□□□□□ -0.32
SHMT2-232ENST00000557487 PCP4P48539 62 aa13.05□□□□□ -0.32
SHMT2-232ENST00000557487 FBLN7Q53RD9 439 aa13.05□□□□□ -0.32
SHMT2-232ENST00000557487 SLC25A34Q6PIV7 304 aa13.05□□□□□ -0.32
SHMT2-232ENST00000557487 BLNKQ8WV28 456 aa13.05□□□□□ -0.32
SHMT2-232ENST00000557487 GTSF1Q8WW33 167 aa13.05□□□□□ -0.32
SHMT2-232ENST00000557487 MAP1LC3CQ9BXW4 147 aa13.05□□□□□ -0.32
SHMT2-232ENST00000557487 Q9H3A6 140 aa13.05□□□□□ -0.32
SHMT2-232ENST00000557487 MRPL36Q9P0J6 103 aaKnown RBP13.05□□□□□ -0.32
SHMT2-232ENST00000557487 PPIAL4EA0A075B759 164 aa13.05□□□□□ -0.32
SHMT2-232ENST00000557487 C17orf100A8MU93 164 aa13.05□□□□□ -0.32
SHMT2-232ENST00000557487 PPIAL4DF5H284 164 aa13.05□□□□□ -0.32
SHMT2-232ENST00000557487 NDUFB3O43676 98 aa13.05□□□□□ -0.32
SHMT2-232ENST00000557487 PPIAL4FP0DN26 164 aa13.05□□□□□ -0.32
SHMT2-232ENST00000557487 CCL3L1P16619 93 aa13.05□□□□□ -0.32
SHMT2-232ENST00000557487 C10orf55Q5SWW7 151 aa13.05□□□□□ -0.32
SHMT2-232ENST00000557487 C16orf54Q6UWD8 224 aa13.05□□□□□ -0.32
SHMT2-232ENST00000557487 TMEM108Q6UXF1 575 aa13.05□□□□□ -0.32
SHMT2-232ENST00000557487 CLEC5AQ9NY25 188 aa13.05□□□□□ -0.32
SHMT2-232ENST00000557487 RNF24Q9Y225 148 aa13.05□□□□□ -0.32
SHMT2-232ENST00000557487 IGFL3Q6UXB1 125 aa13.04□□□□□ -0.32
SHMT2-232ENST00000557487 GATD1Q8NB37 220 aa13.04□□□□□ -0.32
SHMT2-232ENST00000557487 TNFRSF14Q92956 283 aa13.04□□□□□ -0.32
SHMT2-232ENST00000557487 PGLYRP4Q96LB8 373 aa13.04□□□□□ -0.32
SHMT2-232ENST00000557487 PMCHL2Q9BQD1 86 aa13.04□□□□□ -0.32
SHMT2-232ENST00000557487 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13.03□□□□□ -0.32
SHMT2-232ENST00000557487 SLC25A17O43808 307 aa13.03□□□□□ -0.32
SHMT2-232ENST00000557487 PLAUP00749 431 aa13.03□□□□□ -0.32
SHMT2-232ENST00000557487 CEACAM8P31997 349 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-232ENST00000557487 RPL27AP46776 148 aaKnown RBP13.03□□□□□ -0.32
SHMT2-232ENST00000557487 SPATA12Q7Z6I5 190 aa13.03□□□□□ -0.32
SHMT2-232ENST00000557487 Q86TA4 180 aa13.03□□□□□ -0.32
SHMT2-232ENST00000557487 HIGD1AQ9Y241 93 aa13.03□□□□□ -0.32
SHMT2-232ENST00000557487 DMXL2Q8TDJ6 3036 aa13.03□□□□□ -0.32
SHMT2-232ENST00000557487 RHOGP84095 191 aa13.03□□□□□ -0.32
SHMT2-232ENST00000557487 LINC00322Q6ZN03 302 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-232ENST00000557487 KIR3DL3Q8N743 410 aa13.03□□□□□ -0.32
SHMT2-232ENST00000557487 GSX1Q9H4S2 264 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-232ENST00000557487 KMT2BQ9UMN6 2715 aaPredicted RBP13.02□□□□□ -0.32
SHMT2-232ENST00000557487 TMEM178BH3BS89 294 aa13.02□□□□□ -0.32
SHMT2-232ENST00000557487 TNFRSF13BO14836 293 aaPredicted RBP13.02□□□□□ -0.32
SHMT2-232ENST00000557487 HOXB4P17483 251 aaPredicted RBP13.02□□□□□ -0.32
SHMT2-232ENST00000557487 COL8A1P27658 744 aa13.02□□□□□ -0.32
SHMT2-232ENST00000557487 CDKN1BP46527 198 aa13.02□□□□□ -0.32
SHMT2-232ENST00000557487 ASPHD1Q5U4P2 390 aa13.02□□□□□ -0.32
SHMT2-232ENST00000557487 OR4C5Q8NGB2 326 aa13.02□□□□□ -0.32
SHMT2-232ENST00000557487 DYSFO75923 2080 aa13.02□□□□□ -0.33
SHMT2-232ENST00000557487 RBX1P62877 108 aa13.01□□□□□ -0.33
SHMT2-232ENST00000557487 CCL8P80075 99 aa13.01□□□□□ -0.33
SHMT2-232ENST00000557487 RIGQ13278 110 aa13.01□□□□□ -0.33
SHMT2-232ENST00000557487 MRGPRG-AS1Q2M3A8 158 aa13.01□□□□□ -0.33
SHMT2-232ENST00000557487 DEFB109BQ30KR1 87 aa13.01□□□□□ -0.33
SHMT2-232ENST00000557487 Q6AWC8 147 aa13.01□□□□□ -0.33
SHMT2-232ENST00000557487 KAAG1Q9UBP8 84 aa13.01□□□□□ -0.33
SHMT2-232ENST00000557487 RPH3ALQ9UNE2 315 aa13.01□□□□□ -0.33
SHMT2-232ENST00000557487 EPG5Q9HCE0 2579 aa13.01□□□□□ -0.33
SHMT2-232ENST00000557487 ANKRD11Q6UB99 2663 aaPredicted RBP13.01□□□□□ -0.33
SHMT2-232ENST00000557487 APOHP02749 345 aaPredicted RBP13.01□□□□□ -0.33
SHMT2-232ENST00000557487 DLX6P56179 175 aa13.01□□□□□ -0.33
SHMT2-232ENST00000557487 DEFB125Q8N687 156 aa13.01□□□□□ -0.33
SHMT2-232ENST00000557487 H1FXQ92522 213 aaKnown RBP13.01□□□□□ -0.33
SHMT2-232ENST00000557487 SCRT2Q9NQ03 307 aa13.01□□□□□ -0.33
SHMT2-232ENST00000557487 ZNF835Q9Y2P0 537 aa13.01□□□□□ -0.33
SHMT2-232ENST00000557487 VSTM5A8MXK1 200 aa13□□□□□ -0.33
SHMT2-232ENST00000557487 IGHV3-48P01763 117 aa13□□□□□ -0.33
SHMT2-232ENST00000557487 CRYGBP07316 175 aa13□□□□□ -0.33
SHMT2-232ENST00000557487 TMEM155Q4W5P6 130 aa13□□□□□ -0.33
SHMT2-232ENST00000557487 BVES-AS1Q5T3Y7 98 aa13□□□□□ -0.33
SHMT2-232ENST00000557487 SRSF8Q9BRL6 282 aaKnown RBP13□□□□□ -0.33
SHMT2-232ENST00000557487 F11RQ9Y624 299 aaKnown RBP13□□□□□ -0.33
SHMT2-232ENST00000557487 PKD1L2Q7Z442 2459 aa13□□□□□ -0.33
SHMT2-232ENST00000557487 PTPRQQ9UMZ3 2332 aa13□□□□□ -0.33
SHMT2-232ENST00000557487 LOC105371242A0A075B767 164 aa13□□□□□ -0.33
SHMT2-232ENST00000557487 A0A1B0GUT8 65 aa13□□□□□ -0.33
SHMT2-232ENST00000557487 TOX4O94842 621 aa13□□□□□ -0.33
SHMT2-232ENST00000557487 FAM87AP0C7U9 286 aa13□□□□□ -0.33
SHMT2-232ENST00000557487 HIST1H1AQ02539 215 aaPredicted RBP13□□□□□ -0.33
SHMT2-232ENST00000557487 VAMP3Q15836 100 aa13□□□□□ -0.33
SHMT2-232ENST00000557487 SAPCD1Q5SSQ6 148 aa13□□□□□ -0.33
SHMT2-232ENST00000557487 LINC01545Q5VT33 79 aa13□□□□□ -0.33
SHMT2-232ENST00000557487 LYPD1Q8N2G4 141 aa13□□□□□ -0.33
SHMT2-232ENST00000557487 RNASE8Q8TDE3 154 aaKnown RBP13□□□□□ -0.33
SHMT2-232ENST00000557487 DPF1Q92782 380 aa13□□□□□ -0.33
SHMT2-232ENST00000557487 K7EQM0 130 aa12.99□□□□□ -0.33
SHMT2-232ENST00000557487 HTR1DP28221 377 aa12.99□□□□□ -0.33
SHMT2-232ENST00000557487 RBPJQ06330 500 aa12.99□□□□□ -0.33
SHMT2-232ENST00000557487 FAM27E3Q08E93 113 aa12.99□□□□□ -0.33
SHMT2-232ENST00000557487 DIAPH2-AS1Q14236 149 aa12.99□□□□□ -0.33
SHMT2-232ENST00000557487 ADIPOQQ15848 244 aa12.99□□□□□ -0.33
SHMT2-232ENST00000557487 MPV17L2Q567V2 206 aa12.99□□□□□ -0.33
SHMT2-232ENST00000557487 HCP5Q6MZN7 132 aa12.99□□□□□ -0.33
SHMT2-232ENST00000557487 TMEM75Q8N9X5 138 aa12.99□□□□□ -0.33
SHMT2-232ENST00000557487 SGK494Q96LW2 274 aa12.99□□□□□ -0.33
SHMT2-232ENST00000557487 SH2D7A6NKC9 451 aaPredicted RBP12.98□□□□□ -0.33
SHMT2-232ENST00000557487 CD5LO43866 347 aa12.98□□□□□ -0.33
SHMT2-232ENST00000557487 NUDT3O95989 172 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms