RNA–Protein interactions for RNA: ENST00000557342.5

SLIRP-209, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 1 (best) BASIC

Gene SLIRP, Length 408 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-209ENST00000557342 COL7A1Q02388 2944 aa9.26□□□□□ -0.93
SLIRP-209ENST00000557342 KIR2DL5BA0A0G2JN68 375 aa9.26□□□□□ -0.93
SLIRP-209ENST00000557342 KIR2DL5BA0A0G2JPC4 375 aa9.26□□□□□ -0.93
SLIRP-209ENST00000557342 UBE2CO00762 179 aa9.26□□□□□ -0.93
SLIRP-209ENST00000557342 S100A7AQ86SG5 101 aa9.26□□□□□ -0.93
SLIRP-209ENST00000557342 STX12Q86Y82 276 aa9.26□□□□□ -0.93
SLIRP-209ENST00000557342 APRG1Q8IVJ8 170 aa9.26□□□□□ -0.93
SLIRP-209ENST00000557342 KIR2DL5AQ8N109 375 aa9.26□□□□□ -0.93
SLIRP-209ENST00000557342 KIR2DL5BQ8NHK3 375 aa9.26□□□□□ -0.93
SLIRP-209ENST00000557342 DCANP1Q8TF63 244 aa9.26□□□□□ -0.93
SLIRP-209ENST00000557342 TMEM147Q9BVK8 224 aa9.26□□□□□ -0.93
SLIRP-209ENST00000557342 SEPSECSQ9HD40 501 aaKnown RBP9.26□□□□□ -0.93
SLIRP-209ENST00000557342 LYRM2Q9NU23 88 aaPredicted RBP9.26□□□□□ -0.93
SLIRP-209ENST00000557342 FAM24AA6NFZ4 105 aa9.25□□□□□ -0.93
SLIRP-209ENST00000557342 SIX6O95475 246 aa9.25□□□□□ -0.93
SLIRP-209ENST00000557342 ORM2P19652 201 aa9.25□□□□□ -0.93
SLIRP-209ENST00000557342 DEFB131AP59861 70 aa9.25□□□□□ -0.93
SLIRP-209ENST00000557342 HBG1P69891 147 aa9.25□□□□□ -0.93
SLIRP-209ENST00000557342 HBG2P69892 147 aa9.25□□□□□ -0.93
SLIRP-209ENST00000557342 SLC38A11Q08AI6 406 aa9.25□□□□□ -0.93
SLIRP-209ENST00000557342 ARL16Q0P5N6 197 aa9.25□□□□□ -0.93
SLIRP-209ENST00000557342 FCN2Q15485 313 aa9.25□□□□□ -0.93
SLIRP-209ENST00000557342 TMEM252Q8N6L7 170 aa9.25□□□□□ -0.93
SLIRP-209ENST00000557342 OR11H7Q8NGC8 314 aa9.25□□□□□ -0.93
SLIRP-209ENST00000557342 ASB13Q8WXK3 278 aa9.25□□□□□ -0.93
SLIRP-209ENST00000557342 NRN1Q9NPD7 142 aa9.25□□□□□ -0.93
SLIRP-209ENST00000557342 E5RGE8 158 aa9.24□□□□□ -0.93
SLIRP-209ENST00000557342 CST7O76096 145 aa9.24□□□□□ -0.93
SLIRP-209ENST00000557342 GATA2P23769 480 aaPredicted RBP9.24□□□□□ -0.93
SLIRP-209ENST00000557342 S100A11P31949 105 aa9.24□□□□□ -0.93
SLIRP-209ENST00000557342 SULT1A1P50225 295 aa9.24□□□□□ -0.93
SLIRP-209ENST00000557342 PLP1P60201 277 aa9.24□□□□□ -0.93
SLIRP-209ENST00000557342 RAP2BP61225 183 aa9.24□□□□□ -0.93
SLIRP-209ENST00000557342 SNRPD3P62318 126 aaKnown RBP9.24□□□□□ -0.93
SLIRP-209ENST00000557342 RAB31Q13636 194 aa9.24□□□□□ -0.93
SLIRP-209ENST00000557342 TMEM182Q6ZP80 229 aaPredicted RBP9.24□□□□□ -0.93
SLIRP-209ENST00000557342 ZNF546Q86UE3 836 aa9.24□□□□□ -0.93
SLIRP-209ENST00000557342 AKAP14Q86UN6 197 aa9.24□□□□□ -0.93
SLIRP-209ENST00000557342 OR8I2Q8N0Y5 310 aa9.24□□□□□ -0.93
SLIRP-209ENST00000557342 FAM24BQ8N5W8 94 aa9.24□□□□□ -0.93
SLIRP-209ENST00000557342 STPG3Q8N7X2 389 aa9.24□□□□□ -0.93
SLIRP-209ENST00000557342 OR1B1Q8NGR6 318 aa9.24□□□□□ -0.93
SLIRP-209ENST00000557342 RNF24Q9Y225 148 aa9.24□□□□□ -0.93
SLIRP-209ENST00000557342 ZNF98A6NK75 572 aa9.23□□□□□ -0.93
SLIRP-209ENST00000557342 HYPMO75409 117 aa9.23□□□□□ -0.93
SLIRP-209ENST00000557342 ZNF688P0C7X2 276 aa9.23□□□□□ -0.93
SLIRP-209ENST00000557342 LINC00869P0C866 280 aa9.23□□□□□ -0.93
SLIRP-209ENST00000557342 PET100P0DJ07 73 aa9.23□□□□□ -0.93
SLIRP-209ENST00000557342 RPL35AP18077 110 aaKnown RBP9.23□□□□□ -0.93
SLIRP-209ENST00000557342 CXCL3P19876 107 aa9.23□□□□□ -0.93
SLIRP-209ENST00000557342 GALR1P47211 349 aa9.23□□□□□ -0.93
SLIRP-209ENST00000557342 ZNF124Q15973 351 aa9.23□□□□□ -0.93
SLIRP-209ENST00000557342 ATP6V1FQ16864 119 aa9.23□□□□□ -0.93
SLIRP-209ENST00000557342 PXDC1Q5TGL8 231 aa9.23□□□□□ -0.93
SLIRP-209ENST00000557342 SAMD13Q5VXD3 122 aa9.23□□□□□ -0.93
SLIRP-209ENST00000557342 LEMD1Q68G75 181 aa9.23□□□□□ -0.93
SLIRP-209ENST00000557342 Q6ZWC4 215 aa9.23□□□□□ -0.93
SLIRP-209ENST00000557342 STHQ8IWL8 128 aa9.23□□□□□ -0.93
SLIRP-209ENST00000557342 TMEM217Q8N7C4 229 aa9.23□□□□□ -0.93
SLIRP-209ENST00000557342 GPR82Q96P67 336 aa9.23□□□□□ -0.93
SLIRP-209ENST00000557342 SLC25A31Q9H0C2 315 aa9.23□□□□□ -0.93
SLIRP-209ENST00000557342 UQCC1Q9NVA1 299 aa9.23□□□□□ -0.93
SLIRP-209ENST00000557342 HIGD1AQ9Y241 93 aa9.23□□□□□ -0.93
SLIRP-209ENST00000557342 TP53TG1Q9Y2A0 90 aa9.23□□□□□ -0.93
SLIRP-209ENST00000557342 IGSF23A1L1A6 192 aa9.22□□□□□ -0.93
SLIRP-209ENST00000557342 AGPAT2O15120 278 aa9.22□□□□□ -0.93
SLIRP-209ENST00000557342 GIPP09681 153 aaPredicted RBP9.22□□□□□ -0.93
SLIRP-209ENST00000557342 ID1P41134 155 aa9.22□□□□□ -0.93
SLIRP-209ENST00000557342 MEOX2P50222 304 aa9.22□□□□□ -0.93
SLIRP-209ENST00000557342 H2BFSP57053 126 aa9.22□□□□□ -0.93
SLIRP-209ENST00000557342 VWC2Q2TAL6 325 aa9.22□□□□□ -0.93
SLIRP-209ENST00000557342 LRRC37A5PQ49AS3 106 aa9.22□□□□□ -0.93
SLIRP-209ENST00000557342 CSTL1Q9H114 145 aa9.22□□□□□ -0.93
SLIRP-209ENST00000557342 SLC25A22Q9H936 323 aa9.22□□□□□ -0.93
SLIRP-209ENST00000557342 RETNQ9HD89 108 aa9.22□□□□□ -0.93
SLIRP-209ENST00000557342 DOK5Q9P104 306 aa9.22□□□□□ -0.93
SLIRP-209ENST00000557342 H3BRN7 92 aa9.21□□□□□ -0.94
SLIRP-209ENST00000557342 PFDN1O60925 122 aa9.21□□□□□ -0.94
SLIRP-209ENST00000557342 OR5G3P0C626 314 aa9.21□□□□□ -0.94
SLIRP-209ENST00000557342 PSMG4Q5JS54 123 aa9.21□□□□□ -0.94
SLIRP-209ENST00000557342 TCTE3Q8IZS6 198 aa9.21□□□□□ -0.94
SLIRP-209ENST00000557342 PPP1R1CQ8WVI7 109 aa9.21□□□□□ -0.94
SLIRP-209ENST00000557342 ST6GAL2Q96JF0 529 aa9.21□□□□□ -0.94
SLIRP-209ENST00000557342 MGST2Q99735 147 aa9.21□□□□□ -0.94
SLIRP-209ENST00000557342 SHANK2-AS3Q9BTD1 123 aa9.21□□□□□ -0.94
SLIRP-209ENST00000557342 SLC25A39Q9BZJ4 359 aaPredicted RBP9.21□□□□□ -0.94
SLIRP-209ENST00000557342 ARL6Q9H0F7 186 aa9.21□□□□□ -0.94
SLIRP-209ENST00000557342 SLC25A32Q9H2D1 315 aa9.21□□□□□ -0.94
SLIRP-209ENST00000557342 WDR83OSQ9Y284 106 aa9.21□□□□□ -0.94
SLIRP-209ENST00000557342 SPRY2O43597 315 aa9.2□□□□□ -0.94
SLIRP-209ENST00000557342 MPDU1O75352 247 aa9.2□□□□□ -0.94
SLIRP-209ENST00000557342 RPL7P18124 248 aaKnown RBP9.2□□□□□ -0.94
SLIRP-209ENST00000557342 CAMLGP49069 296 aa9.2□□□□□ -0.94
SLIRP-209ENST00000557342 PSMB3P49720 205 aa9.2□□□□□ -0.94
SLIRP-209ENST00000557342 EWSR1Q01844 656 aaKnown RBP eCLIP9.2□□□□□ -0.94
SLIRP-209ENST00000557342 BAXQ07812 192 aa9.2□□□□□ -0.94
SLIRP-209ENST00000557342 Q6ZRG5 221 aa9.2□□□□□ -0.94
SLIRP-209ENST00000557342 OVOL2Q9BRP0 275 aa9.2□□□□□ -0.94
SLIRP-209ENST00000557342 ARV1Q9H2C2 271 aa9.2□□□□□ -0.94
SLIRP-209ENST00000557342 EDA2RQ9HAV5 297 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms