RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 RNF24Q9Y225 148 aa9.8□□□□□ -0.84
CCDC88C-211ENST00000556726 ZNF257Q9Y2Q1 563 aa9.8□□□□□ -0.84
CCDC88C-211ENST00000556726 ZNF292O60281 2723 aa9.8□□□□□ -0.84
CCDC88C-211ENST00000556726 USP9XQ93008 2570 aaPredicted RBP9.8□□□□□ -0.84
CCDC88C-211ENST00000556726 ZNF324O75467 553 aaPredicted RBP9.8□□□□□ -0.84
CCDC88C-211ENST00000556726 C3orf79P0CE67 100 aa9.8□□□□□ -0.84
CCDC88C-211ENST00000556726 CX3CL1P78423 397 aa9.8□□□□□ -0.84
CCDC88C-211ENST00000556726 MEF2CQ06413 473 aaPredicted RBP9.8□□□□□ -0.84
CCDC88C-211ENST00000556726 Q6ZVH6 145 aa9.8□□□□□ -0.84
CCDC88C-211ENST00000556726 PIP4P1Q86T03 277 aa9.8□□□□□ -0.84
CCDC88C-211ENST00000556726 CHRDL1Q9BU40 450 aa9.8□□□□□ -0.84
CCDC88C-211ENST00000556726 MRPL32Q9BYC8 188 aaKnown RBP9.8□□□□□ -0.84
CCDC88C-211ENST00000556726 OSTCQ9NRP0 149 aa9.8□□□□□ -0.84
CCDC88C-211ENST00000556726 LINC00527Q9UJ94 153 aa9.8□□□□□ -0.84
CCDC88C-211ENST00000556726 TET2Q6N021 2002 aaPredicted RBP9.8□□□□□ -0.84
CCDC88C-211ENST00000556726 IGHV2-26A0A0B4J1V2 119 aa9.79□□□□□ -0.84
CCDC88C-211ENST00000556726 LHBP01229 141 aa9.79□□□□□ -0.84
CCDC88C-211ENST00000556726 OR5AL1P0C617 328 aa9.79□□□□□ -0.84
CCDC88C-211ENST00000556726 APOBEC3AP31941 199 aaPredicted RBP9.79□□□□□ -0.84
CCDC88C-211ENST00000556726 ASCL5Q7RTU5 278 aa9.79□□□□□ -0.84
CCDC88C-211ENST00000556726 AP1S3Q96PC3 154 aa9.79□□□□□ -0.84
CCDC88C-211ENST00000556726 NDUFA4L2Q9NRX3 87 aa9.79□□□□□ -0.84
CCDC88C-211ENST00000556726 IZUMO1RA6ND01 250 aa9.79□□□□□ -0.84
CCDC88C-211ENST00000556726 BMPR1BO00238 502 aa9.79□□□□□ -0.84
CCDC88C-211ENST00000556726 PTTG1IPP53801 180 aa9.79□□□□□ -0.84
CCDC88C-211ENST00000556726 SPACA3Q8IXA5 215 aa9.79□□□□□ -0.84
CCDC88C-211ENST00000556726 KCNS1Q96KK3 526 aa9.79□□□□□ -0.84
CCDC88C-211ENST00000556726 SLC25A2Q9BXI2 301 aa9.79□□□□□ -0.84
CCDC88C-211ENST00000556726 GOLT1BQ9Y3E0 138 aa9.79□□□□□ -0.84
CCDC88C-211ENST00000556726 SONP18583 2426 aaKnown RBP9.79□□□□□ -0.84
CCDC88C-211ENST00000556726 LEPROTL1O95214 131 aa9.78□□□□□ -0.84
CCDC88C-211ENST00000556726 TYMSP04818 313 aa9.78□□□□□ -0.84
CCDC88C-211ENST00000556726 LOXP28300 417 aaPredicted RBP9.78□□□□□ -0.84
CCDC88C-211ENST00000556726 PPIFP30405 207 aaKnown RBP9.78□□□□□ -0.84
CCDC88C-211ENST00000556726 LGALS7P47929 136 aa9.78□□□□□ -0.84
CCDC88C-211ENST00000556726 C1orf194Q5T5A4 169 aa9.78□□□□□ -0.84
CCDC88C-211ENST00000556726 HIVEP3Q5T1R4 2406 aa9.78□□□□□ -0.84
CCDC88C-211ENST00000556726 ZZEF1O43149 2961 aa9.78□□□□□ -0.84
CCDC88C-211ENST00000556726 C9JCJ5 164 aa9.78□□□□□ -0.84
CCDC88C-211ENST00000556726 GPX1P07203 203 aa9.78□□□□□ -0.84
CCDC88C-211ENST00000556726 NHLH1Q02575 133 aa9.78□□□□□ -0.84
CCDC88C-211ENST00000556726 Q8N7P7 452 aa9.78□□□□□ -0.84
CCDC88C-211ENST00000556726 C5orf17Q8NAS9 161 aa9.78□□□□□ -0.84
CCDC88C-211ENST00000556726 STXBP6Q8NFX7 210 aa9.78□□□□□ -0.84
CCDC88C-211ENST00000556726 GPR82Q96P67 336 aa9.78□□□□□ -0.84
CCDC88C-211ENST00000556726 DIRC2Q96SL1 478 aa9.78□□□□□ -0.84
CCDC88C-211ENST00000556726 A0A1W2PS18 150 aa9.78□□□□□ -0.84
CCDC88C-211ENST00000556726 SIAH2O43255 324 aa9.78□□□□□ -0.84
CCDC88C-211ENST00000556726 BPIFA4PQ86YQ2 179 aa9.78□□□□□ -0.84
CCDC88C-211ENST00000556726 TMEM167AQ8TBQ9 72 aa9.78□□□□□ -0.84
CCDC88C-211ENST00000556726 GNB1LQ9BYB4 327 aa9.78□□□□□ -0.84
CCDC88C-211ENST00000556726 RAB1BQ9H0U4 201 aa9.78□□□□□ -0.84
CCDC88C-211ENST00000556726 OR2T8A6NH00 312 aa9.77□□□□□ -0.85
CCDC88C-211ENST00000556726 CFHR2P36980 270 aa9.77□□□□□ -0.85
CCDC88C-211ENST00000556726 TMEM136Q6ZRR5 245 aa9.77□□□□□ -0.85
CCDC88C-211ENST00000556726 OR4B1Q8NGF8 309 aa9.77□□□□□ -0.85
CCDC88C-211ENST00000556726 ZNF596Q8TC21 504 aa9.77□□□□□ -0.85
CCDC88C-211ENST00000556726 ZNF503Q96F45 646 aa9.77□□□□□ -0.85
CCDC88C-211ENST00000556726 IGHV1-3A0A0C4DH29 117 aa9.77□□□□□ -0.85
CCDC88C-211ENST00000556726 UQCRFS1P47985 274 aa9.77□□□□□ -0.85
CCDC88C-211ENST00000556726 HBBP68871 147 aa9.77□□□□□ -0.85
CCDC88C-211ENST00000556726 GUSBP1Q15486 140 aa9.77□□□□□ -0.85
CCDC88C-211ENST00000556726 ZNF329Q86UD4 541 aa9.77□□□□□ -0.85
CCDC88C-211ENST00000556726 PRSS33Q8NF86 280 aa9.77□□□□□ -0.85
CCDC88C-211ENST00000556726 RNASEH2CQ8TDP1 164 aaKnown RBP9.77□□□□□ -0.85
CCDC88C-211ENST00000556726 C17orf77Q96MU5 243 aa9.77□□□□□ -0.85
CCDC88C-211ENST00000556726 MIEN1Q9BRT3 115 aa9.77□□□□□ -0.85
CCDC88C-211ENST00000556726 C19orf24Q9BVV8 132 aa9.77□□□□□ -0.85
CCDC88C-211ENST00000556726 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.76□□□□□ -0.85
CCDC88C-211ENST00000556726 PATE2Q6UY27 113 aa9.76□□□□□ -0.85
CCDC88C-211ENST00000556726 C1orf159Q96HA4 380 aa9.76□□□□□ -0.85
CCDC88C-211ENST00000556726 GRAMD2BQ96HH9 432 aa9.76□□□□□ -0.85
CCDC88C-211ENST00000556726 RPP21Q9H633 154 aaKnown RBP9.76□□□□□ -0.85
CCDC88C-211ENST00000556726 THBDP07204 575 aa9.76□□□□□ -0.85
CCDC88C-211ENST00000556726 ZNF672Q499Z4 452 aaPredicted RBP9.76□□□□□ -0.85
CCDC88C-211ENST00000556726 NIT1Q86X76 327 aa9.76□□□□□ -0.85
CCDC88C-211ENST00000556726 OR5AN1Q8NGI8 311 aa9.76□□□□□ -0.85
CCDC88C-211ENST00000556726 TSKUQ8WUA8 353 aa9.76□□□□□ -0.85
CCDC88C-211ENST00000556726 SIGLEC9Q9Y336 463 aa9.76□□□□□ -0.85
CCDC88C-211ENST00000556726 CLEC3BP05452 202 aa9.76□□□□□ -0.85
CCDC88C-211ENST00000556726 GATA4P43694 442 aa9.76□□□□□ -0.85
CCDC88C-211ENST00000556726 NUTF2P61970 127 aaKnown RBP9.76□□□□□ -0.85
CCDC88C-211ENST00000556726 COL5A1-AS1Q5SY13 56 aa9.76□□□□□ -0.85
CCDC88C-211ENST00000556726 IGFL2Q6UWQ7 119 aa9.76□□□□□ -0.85
CCDC88C-211ENST00000556726 Q8TAT8 98 aa9.76□□□□□ -0.85
CCDC88C-211ENST00000556726 UQCR10Q9UDW1 63 aa9.76□□□□□ -0.85
CCDC88C-211ENST00000556726 B9A039 149 aa9.75□□□□□ -0.85
CCDC88C-211ENST00000556726 CEACAM8P31997 349 aaPredicted RBP9.75□□□□□ -0.85
CCDC88C-211ENST00000556726 LURAP1LQ8IV03 231 aa9.75□□□□□ -0.85
CCDC88C-211ENST00000556726 C18orf15Q96N68 181 aa9.75□□□□□ -0.85
CCDC88C-211ENST00000556726 UFC1Q9Y3C8 167 aa9.75□□□□□ -0.85
CCDC88C-211ENST00000556726 hDV102S1A0JD36 115 aa9.75□□□□□ -0.85
CCDC88C-211ENST00000556726 LIPFP07098 398 aa9.75□□□□□ -0.85
CCDC88C-211ENST00000556726 YPEL3P61236 119 aaPredicted RBP9.75□□□□□ -0.85
CCDC88C-211ENST00000556726 DEFB104AQ8WTQ1 72 aa9.75□□□□□ -0.85
CCDC88C-211ENST00000556726 TP73-AS1Q9UF72 201 aa9.75□□□□□ -0.85
CCDC88C-211ENST00000556726 RAXQ9Y2V3 346 aa9.75□□□□□ -0.85
CCDC88C-211ENST00000556726 OR4C46A6NHA9 309 aa9.75□□□□□ -0.85
CCDC88C-211ENST00000556726 CEACAM3P40198 252 aa9.75□□□□□ -0.85
CCDC88C-211ENST00000556726 ZNF841Q6ZN19 808 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms