RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 RBMY1BA6NDE4 496 aaKnown RBP10.5□□□□□ -0.73
PTCH1-226ENST00000553011 RBMY1EA6NEQ0 496 aaKnown RBP10.5□□□□□ -0.73
PTCH1-226ENST00000553011 AGPAT2O15120 278 aa10.5□□□□□ -0.73
PTCH1-226ENST00000553011 RBMY1DP0C7P1 496 aaKnown RBP10.5□□□□□ -0.73
PTCH1-226ENST00000553011 LINC00869P0C866 280 aa10.5□□□□□ -0.73
PTCH1-226ENST00000553011 S100A11P31949 105 aa10.5□□□□□ -0.73
PTCH1-226ENST00000553011 HBG1P69891 147 aa10.5□□□□□ -0.73
PTCH1-226ENST00000553011 HBG2P69892 147 aa10.5□□□□□ -0.73
PTCH1-226ENST00000553011 EWSR1Q01844 656 aaKnown RBP eCLIP10.5□□□□□ -0.73
PTCH1-226ENST00000553011 VWC2Q2TAL6 325 aa10.5□□□□□ -0.73
PTCH1-226ENST00000553011 FAM24BQ8N5W8 94 aa10.5□□□□□ -0.73
PTCH1-226ENST00000553011 OR1B1Q8NGR6 318 aa10.5□□□□□ -0.73
PTCH1-226ENST00000553011 MGST2Q99735 147 aa10.5□□□□□ -0.73
PTCH1-226ENST00000553011 TMEM147Q9BVK8 224 aa10.5□□□□□ -0.73
PTCH1-226ENST00000553011 SLC25A31Q9H0C2 315 aa10.5□□□□□ -0.73
PTCH1-226ENST00000553011 UQCC1Q9NVA1 299 aa10.5□□□□□ -0.73
PTCH1-226ENST00000553011 MBD2Q9UBB5 411 aa10.5□□□□□ -0.73
PTCH1-226ENST00000553011 UBE2L5PA0A1B0GUS4 154 aa10.49□□□□□ -0.73
PTCH1-226ENST00000553011 HELTA6NFD8 242 aa10.49□□□□□ -0.73
PTCH1-226ENST00000553011 K7EQG2 157 aa10.49□□□□□ -0.73
PTCH1-226ENST00000553011 PET100P0DJ07 73 aa10.49□□□□□ -0.73
PTCH1-226ENST00000553011 NUP62P37198 522 aaPredicted RBP10.49□□□□□ -0.73
PTCH1-226ENST00000553011 SELENOTP62341 195 aa10.49□□□□□ -0.73
PTCH1-226ENST00000553011 ZNF124Q15973 351 aa10.49□□□□□ -0.73
PTCH1-226ENST00000553011 SIGLEC15Q6ZMC9 328 aa10.49□□□□□ -0.73
PTCH1-226ENST00000553011 LINC00322Q6ZN03 302 aaPredicted RBP10.49□□□□□ -0.73
PTCH1-226ENST00000553011 MAP6D1Q9H9H5 199 aa10.49□□□□□ -0.73
PTCH1-226ENST00000553011 PFDN2Q9UHV9 154 aa10.49□□□□□ -0.73
PTCH1-226ENST00000553011 SLC45A2Q9UMX9 530 aa10.49□□□□□ -0.73
PTCH1-226ENST00000553011 WDR83OSQ9Y284 106 aa10.49□□□□□ -0.73
PTCH1-226ENST00000553011 TRAV2A0A0B4J234 112 aa10.48□□□□□ -0.73
PTCH1-226ENST00000553011 PLP1P60201 277 aa10.48□□□□□ -0.73
PTCH1-226ENST00000553011 HAGHQ16775 308 aa10.48□□□□□ -0.73
PTCH1-226ENST00000553011 ATP6V1FQ16864 119 aa10.48□□□□□ -0.73
PTCH1-226ENST00000553011 ZNF546Q86UE3 836 aa10.48□□□□□ -0.73
PTCH1-226ENST00000553011 APRG1Q8IVJ8 170 aa10.48□□□□□ -0.73
PTCH1-226ENST00000553011 OR5C1Q8NGR4 320 aa10.48□□□□□ -0.73
PTCH1-226ENST00000553011 DCANP1Q8TF63 244 aa10.48□□□□□ -0.73
PTCH1-226ENST00000553011 ZNF98A6NK75 572 aa10.47□□□□□ -0.73
PTCH1-226ENST00000553011 HYPMO75409 117 aa10.47□□□□□ -0.73
PTCH1-226ENST00000553011 OR5G3P0C626 314 aa10.47□□□□□ -0.73
PTCH1-226ENST00000553011 NHLRC4P0CG21 123 aaPredicted RBP10.47□□□□□ -0.73
PTCH1-226ENST00000553011 CAMLGP49069 296 aa10.47□□□□□ -0.73
PTCH1-226ENST00000553011 AP2S1P53680 142 aaPredicted RBP10.47□□□□□ -0.73
PTCH1-226ENST00000553011 DEFB131AP59861 70 aa10.47□□□□□ -0.73
PTCH1-226ENST00000553011 BAXQ07812 192 aa10.47□□□□□ -0.73
PTCH1-226ENST00000553011 CLINT1Q14677 625 aa10.47□□□□□ -0.73
PTCH1-226ENST00000553011 C1orf194Q5T5A4 169 aa10.47□□□□□ -0.73
PTCH1-226ENST00000553011 MIC13Q5XKP0 118 aa10.47□□□□□ -0.73
PTCH1-226ENST00000553011 PATE2Q6UY27 113 aa10.47□□□□□ -0.73
PTCH1-226ENST00000553011 OR8I2Q8N0Y5 310 aa10.47□□□□□ -0.73
PTCH1-226ENST00000553011 FAM110AQ9BQ89 295 aa10.47□□□□□ -0.73
PTCH1-226ENST00000553011 SCRT1Q9BWW7 348 aa10.47□□□□□ -0.73
PTCH1-226ENST00000553011 GGTLC1Q9BX51 225 aa10.47□□□□□ -0.73
PTCH1-226ENST00000553011 ARL6Q9H0F7 186 aa10.47□□□□□ -0.73
PTCH1-226ENST00000553011 SLC25A22Q9H936 323 aa10.47□□□□□ -0.73
PTCH1-226ENST00000553011 NRN1Q9NPD7 142 aa10.47□□□□□ -0.73
PTCH1-226ENST00000553011 HIGD1AQ9Y241 93 aa10.47□□□□□ -0.73
PTCH1-226ENST00000553011 H3BRN7 92 aa10.46□□□□□ -0.73
PTCH1-226ENST00000553011 GIPP09681 153 aaPredicted RBP10.46□□□□□ -0.73
PTCH1-226ENST00000553011 ZNF688P0C7X2 276 aa10.46□□□□□ -0.73
PTCH1-226ENST00000553011 LYL1P12980 280 aa10.46□□□□□ -0.73
PTCH1-226ENST00000553011 FGF7P21781 194 aa10.46□□□□□ -0.73
PTCH1-226ENST00000553011 RPL12P30050 165 aaKnown RBP10.46□□□□□ -0.73
PTCH1-226ENST00000553011 CMC4P56277 68 aaPredicted RBP10.46□□□□□ -0.73
PTCH1-226ENST00000553011 RAP2BP61225 183 aa10.46□□□□□ -0.73
PTCH1-226ENST00000553011 RAB31Q13636 194 aa10.46□□□□□ -0.73
PTCH1-226ENST00000553011 LEMD1Q68G75 181 aa10.46□□□□□ -0.73
PTCH1-226ENST00000553011 THAP6Q8TBB0 222 aa10.46□□□□□ -0.73
PTCH1-226ENST00000553011 UHRF2Q96PU4 802 aa10.46□□□□□ -0.73
PTCH1-226ENST00000553011 SLC25A39Q9BZJ4 359 aaPredicted RBP10.46□□□□□ -0.73
PTCH1-226ENST00000553011 SLC25A32Q9H2D1 315 aa10.46□□□□□ -0.73
PTCH1-226ENST00000553011 HSPB11Q9Y547 144 aa10.46□□□□□ -0.73
PTCH1-226ENST00000553011 OPCMLQ14982 345 aa10.45□□□□□ -0.74
PTCH1-226ENST00000553011 Q5BKY6 102 aa10.45□□□□□ -0.74
PTCH1-226ENST00000553011 TM2D3Q9BRN9 247 aa10.45□□□□□ -0.74
PTCH1-226ENST00000553011 SHANK2-AS3Q9BTD1 123 aa10.45□□□□□ -0.74
PTCH1-226ENST00000553011 SMIM3Q9BZL3 60 aa10.45□□□□□ -0.74
PTCH1-226ENST00000553011 ARV1Q9H2C2 271 aa10.45□□□□□ -0.74
PTCH1-226ENST00000553011 FBXL17Q9UF56 701 aa10.45□□□□□ -0.74
PTCH1-226ENST00000553011 HUWE1Q7Z6Z7 4374 aaKnown RBP10.44□□□□□ -0.74
PTCH1-226ENST00000553011 LOC102724200A0A096LPH7 203 aaPredicted RBP10.44□□□□□ -0.74
PTCH1-226ENST00000553011 RPL35AP18077 110 aaKnown RBP10.44□□□□□ -0.74
PTCH1-226ENST00000553011 PRR20EP86478 221 aa10.44□□□□□ -0.74
PTCH1-226ENST00000553011 PRR20CP86479 221 aa10.44□□□□□ -0.74
PTCH1-226ENST00000553011 PRR20DP86480 221 aa10.44□□□□□ -0.74
PTCH1-226ENST00000553011 PRR20BP86481 221 aa10.44□□□□□ -0.74
PTCH1-226ENST00000553011 PRR20AP86496 221 aa10.44□□□□□ -0.74
PTCH1-226ENST00000553011 PXDC1Q5TGL8 231 aa10.44□□□□□ -0.74
PTCH1-226ENST00000553011 TMEM37Q8WXS4 190 aa10.44□□□□□ -0.74
PTCH1-226ENST00000553011 NPCDR1Q9BY65 106 aa10.44□□□□□ -0.74
PTCH1-226ENST00000553011 RETNQ9HD89 108 aa10.44□□□□□ -0.74
PTCH1-226ENST00000553011 U3KQK5 164 aa10.44□□□□□ -0.74
PTCH1-226ENST00000553011 COX7A2P2O60397 106 aa10.43□□□□□ -0.74
PTCH1-226ENST00000553011 S100A7P31151 101 aa10.43□□□□□ -0.74
PTCH1-226ENST00000553011 GALR1P47211 349 aa10.43□□□□□ -0.74
PTCH1-226ENST00000553011 RPL29P47914 159 aaKnown RBP10.43□□□□□ -0.74
PTCH1-226ENST00000553011 B2MP61769 119 aa10.43□□□□□ -0.74
PTCH1-226ENST00000553011 PSMG4Q5JS54 123 aa10.43□□□□□ -0.74
PTCH1-226ENST00000553011 CHAC2Q8WUX2 184 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms