RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 C20orf144Q9BQM9 153 aa6.42□□□□□ -1.38
VPS13D-211ENST00000543710 VCYO14598 125 aa6.42□□□□□ -1.38
VPS13D-211ENST00000543710 RNF183Q96D59 192 aa6.42□□□□□ -1.38
VPS13D-211ENST00000543710 HIST1H2BLQ99880 126 aa6.42□□□□□ -1.38
VPS13D-211ENST00000543710 RPUSD1Q9UJJ7 312 aaKnown RBP6.42□□□□□ -1.38
VPS13D-211ENST00000543710 GRIFINA4D1Z8 144 aa6.41□□□□□ -1.38
VPS13D-211ENST00000543710 PRSS46E5RG02 174 aa6.41□□□□□ -1.38
VPS13D-211ENST00000543710 TGFBR3LH3BV60 316 aa6.41□□□□□ -1.38
VPS13D-211ENST00000543710 GAGE13Q4V321 117 aa6.41□□□□□ -1.38
VPS13D-211ENST00000543710 ST6GALNAC6Q969X2 333 aa6.41□□□□□ -1.38
VPS13D-211ENST00000543710 SLC25A15Q9Y619 301 aa6.41□□□□□ -1.38
VPS13D-211ENST00000543710 SPTBN2O15020 2390 aa6.41□□□□□ -1.38
VPS13D-211ENST00000543710 TCF20Q9UGU0 1960 aaKnown RBP6.41□□□□□ -1.38
VPS13D-211ENST00000543710 APOMO95445 188 aa6.41□□□□□ -1.38
VPS13D-211ENST00000543710 ZFAND6Q6FIF0 208 aa6.41□□□□□ -1.38
VPS13D-211ENST00000543710 TRGV2A0A075B6R0 118 aa6.41□□□□□ -1.38
VPS13D-211ENST00000543710 GCSAMLQ5JQS6 135 aa6.41□□□□□ -1.38
VPS13D-211ENST00000543710 UTF1Q5T230 341 aa6.41□□□□□ -1.38
VPS13D-211ENST00000543710 Q6P435 159 aa6.41□□□□□ -1.38
VPS13D-211ENST00000543710 C1QL2Q7Z5L3 287 aa6.41□□□□□ -1.38
VPS13D-211ENST00000543710 VWCEQ96DN2 955 aa6.41□□□□□ -1.38
VPS13D-211ENST00000543710 GGTLC1Q9BX51 225 aa6.41□□□□□ -1.38
VPS13D-211ENST00000543710 TRBV20-1A0A075B6N2 111 aa6.41□□□□□ -1.38
VPS13D-211ENST00000543710 YPEL3P61236 119 aaPredicted RBP6.41□□□□□ -1.38
VPS13D-211ENST00000543710 Q5BKY6 102 aa6.41□□□□□ -1.38
VPS13D-211ENST00000543710 GGNQ86UU5 652 aa6.41□□□□□ -1.38
VPS13D-211ENST00000543710 DLX4Q92988 240 aaPredicted RBP6.41□□□□□ -1.38
VPS13D-211ENST00000543710 IFI27L1Q96BM0 104 aa6.41□□□□□ -1.38
VPS13D-211ENST00000543710 TSSC4Q9Y5U2 329 aaPredicted RBP6.41□□□□□ -1.38
VPS13D-211ENST00000543710 F11RQ9Y624 299 aaKnown RBP6.41□□□□□ -1.38
VPS13D-211ENST00000543710 M0R2P5 195 aa6.41□□□□□ -1.38
VPS13D-211ENST00000543710 ZNF562Q6V9R5 426 aa6.41□□□□□ -1.38
VPS13D-211ENST00000543710 WIPF2Q8TF74 440 aaPredicted RBP6.41□□□□□ -1.38
VPS13D-211ENST00000543710 COQ2Q96H96 371 aa6.41□□□□□ -1.38
VPS13D-211ENST00000543710 ERG28Q9UKR5 140 aa6.41□□□□□ -1.38
VPS13D-211ENST00000543710 ANKRD12Q6UB98 2062 aa6.4□□□□□ -1.38
VPS13D-211ENST00000543710 LHBP01229 141 aa6.4□□□□□ -1.38
VPS13D-211ENST00000543710 C1QCP02747 245 aa6.4□□□□□ -1.38
VPS13D-211ENST00000543710 PAX8Q06710 450 aa6.4□□□□□ -1.38
VPS13D-211ENST00000543710 ZNF585BQ52M93 769 aa6.4□□□□□ -1.38
VPS13D-211ENST00000543710 LDLRAD2Q5SZI1 272 aa6.4□□□□□ -1.38
VPS13D-211ENST00000543710 BPESC1Q9GZL8 116 aa6.4□□□□□ -1.38
VPS13D-211ENST00000543710 RBAKDNA6NC62 111 aa6.4□□□□□ -1.38
VPS13D-211ENST00000543710 RAMP3O60896 148 aa6.4□□□□□ -1.38
VPS13D-211ENST00000543710 PAX2Q02962 417 aa6.4□□□□□ -1.38
VPS13D-211ENST00000543710 TRPT1Q86TN4 253 aaKnown RBP6.4□□□□□ -1.38
VPS13D-211ENST00000543710 IGKV1-9A0A0C4DH69 117 aa6.4□□□□□ -1.39
VPS13D-211ENST00000543710 MYMXA0A1B0GTQ4 84 aa6.4□□□□□ -1.39
VPS13D-211ENST00000543710 NPIPB5A8MRT5 1133 aa6.4□□□□□ -1.39
VPS13D-211ENST00000543710 H0YJW9 148 aa6.4□□□□□ -1.39
VPS13D-211ENST00000543710 TIAF1O95411 115 aa6.4□□□□□ -1.39
VPS13D-211ENST00000543710 TBX6O95947 436 aaPredicted RBP6.4□□□□□ -1.39
VPS13D-211ENST00000543710 CD55P08174 381 aa6.4□□□□□ -1.39
VPS13D-211ENST00000543710 OTX1P32242 354 aaPredicted RBP6.4□□□□□ -1.39
VPS13D-211ENST00000543710 IGHV3-21A0A0B4J1V1 117 aa6.4□□□□□ -1.39
VPS13D-211ENST00000543710 IGHV3-7P01780 117 aa6.4□□□□□ -1.39
VPS13D-211ENST00000543710 TCRAP04437 139 aa6.4□□□□□ -1.39
VPS13D-211ENST00000543710 PRR30Q53SZ7 412 aaPredicted RBP6.4□□□□□ -1.39
VPS13D-211ENST00000543710 ZNF833PQ6ZTB9 187 aa6.4□□□□□ -1.39
VPS13D-211ENST00000543710 ZCCHC24Q8N2G6 241 aaKnown RBP6.4□□□□□ -1.39
VPS13D-211ENST00000543710 KIAA1671Q9BY89 1806 aa6.39□□□□□ -1.39
VPS13D-211ENST00000543710 IGHV2-26A0A0B4J1V2 119 aa6.39□□□□□ -1.39
VPS13D-211ENST00000543710 IGKV1D-43A0A0B4J1Z2 117 aa6.39□□□□□ -1.39
VPS13D-211ENST00000543710 TRAV41A0A0B4J266 112 aa6.39□□□□□ -1.39
VPS13D-211ENST00000543710 MALP21145 153 aa6.39□□□□□ -1.39
VPS13D-211ENST00000543710 ZNF138P52744 262 aa6.39□□□□□ -1.39
VPS13D-211ENST00000543710 RFNGQ9Y644 331 aa6.39□□□□□ -1.39
VPS13D-211ENST00000543710 PRR32B1ATL7 298 aa6.39□□□□□ -1.39
VPS13D-211ENST00000543710 MESP2Q0VG99 397 aa6.39□□□□□ -1.39
VPS13D-211ENST00000543710 LINC01587Q99440 93 aa6.39□□□□□ -1.39
VPS13D-211ENST00000543710 AURKAIP1Q9NWT8 199 aaPredicted RBP6.39□□□□□ -1.39
VPS13D-211ENST00000543710 A0A1W2PRS3 328 aa6.39□□□□□ -1.39
VPS13D-211ENST00000543710 SMIM27A0A1W2PRY6 76 aa6.39□□□□□ -1.39
VPS13D-211ENST00000543710 CLPSL1A2RUU4 121 aa6.39□□□□□ -1.39
VPS13D-211ENST00000543710 RHODO00212 210 aa6.39□□□□□ -1.39
VPS13D-211ENST00000543710 IGHV1-8P0DP01 117 aa6.39□□□□□ -1.39
VPS13D-211ENST00000543710 FAM120AOSQ5T036 256 aa6.39□□□□□ -1.39
VPS13D-211ENST00000543710 LINC01551Q86U37 167 aa6.39□□□□□ -1.39
VPS13D-211ENST00000543710 MDS2Q8NDY4 140 aa6.39□□□□□ -1.39
VPS13D-211ENST00000543710 GAFA1Q96PS6 74 aa6.39□□□□□ -1.39
VPS13D-211ENST00000543710 NRTNQ99748 197 aa6.39□□□□□ -1.39
VPS13D-211ENST00000543710 SMAD5-AS1Q9Y6J3 95 aa6.39□□□□□ -1.39
VPS13D-211ENST00000543710 KNL1Q8NG31 2342 aa6.39□□□□□ -1.39
VPS13D-211ENST00000543710 TRBV7-9A0A0J9YWB2 115 aa6.39□□□□□ -1.39
VPS13D-211ENST00000543710 J3KRW8 73 aa6.39□□□□□ -1.39
VPS13D-211ENST00000543710 CD28P10747 220 aa6.39□□□□□ -1.39
VPS13D-211ENST00000543710 LCNL1Q6ZST4 164 aa6.39□□□□□ -1.39
VPS13D-211ENST00000543710 Q8N8P6 123 aa6.39□□□□□ -1.39
VPS13D-211ENST00000543710 ZNF479Q96JC4 524 aa6.39□□□□□ -1.39
VPS13D-211ENST00000543710 SHANK2-AS3Q9BTD1 123 aa6.39□□□□□ -1.39
VPS13D-211ENST00000543710 FBXL15Q9H469 300 aa6.39□□□□□ -1.39
VPS13D-211ENST00000543710 C22orf46C9J442 243 aa6.39□□□□□ -1.39
VPS13D-211ENST00000543710 TMEM178BH3BS89 294 aa6.39□□□□□ -1.39
VPS13D-211ENST00000543710 H3BUX3 64 aa6.39□□□□□ -1.39
VPS13D-211ENST00000543710 LEPROTO15243 131 aa6.39□□□□□ -1.39
VPS13D-211ENST00000543710 IGHV1-46P01743 117 aa6.39□□□□□ -1.39
VPS13D-211ENST00000543710 Q86TA4 180 aa6.39□□□□□ -1.39
VPS13D-211ENST00000543710 OCC1Q8TAD7 63 aa6.39□□□□□ -1.39
VPS13D-211ENST00000543710 POLR2AP24928 1970 aaKnown RBP6.38□□□□□ -1.39
VPS13D-211ENST00000543710 IGHV1-24A0A0C4DH33 117 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms