RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	RPL11	P62913	178 aa	Known RBP	7.72	□□□□□ -1.17
CPSF7-221	ENST00000543545	LGALSL	Q3ZCW2	172 aa	Predicted RBP	7.72	□□□□□ -1.17
CPSF7-221	ENST00000543545	GRAMD2B	Q96HH9	432 aa		7.72	□□□□□ -1.17
CPSF7-221	ENST00000543545	ZNF414	Q96IQ9	312 aa		7.72	□□□□□ -1.17
CPSF7-221	ENST00000543545	RSG1	Q9BU20	258 aa		7.72	□□□□□ -1.17
CPSF7-221	ENST00000543545	ZNF471	Q9BX82	626 aa	Predicted RBP	7.72	□□□□□ -1.17
CPSF7-221	ENST00000543545	PARD6G	Q9BYG4	376 aa	Predicted RBP	7.72	□□□□□ -1.17
CPSF7-221	ENST00000543545	TMEM231	Q9H6L2	316 aa		7.72	□□□□□ -1.17
CPSF7-221	ENST00000543545	HIGD1A	Q9Y241	93 aa		7.72	□□□□□ -1.17
CPSF7-221	ENST00000543545	CHEK1	O14757	476 aa		7.71	□□□□□ -1.18
CPSF7-221	ENST00000543545	APOH	P02749	345 aa	Predicted RBP	7.71	□□□□□ -1.18
CPSF7-221	ENST00000543545	CRYBB3	P26998	211 aa		7.71	□□□□□ -1.18
CPSF7-221	ENST00000543545	INSL3	P51460	131 aa		7.71	□□□□□ -1.18
CPSF7-221	ENST00000543545	EIF5A	P63241	154 aa	Known RBP	7.71	□□□□□ -1.18
CPSF7-221	ENST00000543545	PRR20E	P86478	221 aa		7.71	□□□□□ -1.18
CPSF7-221	ENST00000543545	PRR20C	P86479	221 aa		7.71	□□□□□ -1.18
CPSF7-221	ENST00000543545	PRR20D	P86480	221 aa		7.71	□□□□□ -1.18
CPSF7-221	ENST00000543545	PRR20B	P86481	221 aa		7.71	□□□□□ -1.18
CPSF7-221	ENST00000543545	PRR20A	P86496	221 aa		7.71	□□□□□ -1.18
CPSF7-221	ENST00000543545	OXLD1	Q5BKU9	147 aa		7.71	□□□□□ -1.18
CPSF7-221	ENST00000543545	FFAR4	Q5NUL3	377 aa		7.71	□□□□□ -1.18
CPSF7-221	ENST00000543545	PXDC1	Q5TGL8	231 aa		7.71	□□□□□ -1.18
CPSF7-221	ENST00000543545	C10orf113	Q5VZT2	155 aa		7.71	□□□□□ -1.18
CPSF7-221	ENST00000543545	LAMTOR1	Q6IAA8	161 aa		7.71	□□□□□ -1.18
CPSF7-221	ENST00000543545	RBPMS2	Q6ZRY4	209 aa	Known RBP	7.71	□□□□□ -1.18
CPSF7-221	ENST00000543545	OR1L4	Q8NGR5	311 aa		7.71	□□□□□ -1.18
CPSF7-221	ENST00000543545	ST8SIA2	Q92186	375 aa		7.71	□□□□□ -1.18
CPSF7-221	ENST00000543545	GNPNAT1	Q96EK6	184 aa	Predicted RBP	7.71	□□□□□ -1.18
CPSF7-221	ENST00000543545	DNAJC4	Q9NNZ3	241 aa		7.71	□□□□□ -1.18
CPSF7-221	ENST00000543545	TECR	Q9NZ01	308 aa	Known RBP	7.71	□□□□□ -1.18
CPSF7-221	ENST00000543545	ELOA3C	A0A087WX78	387 aa	Predicted RBP	7.7	□□□□□ -1.18
CPSF7-221	ENST00000543545	C8orf88	P0DMB2	117 aa		7.7	□□□□□ -1.18
CPSF7-221	ENST00000543545	ATP6V0C	P27449	155 aa		7.7	□□□□□ -1.18
CPSF7-221	ENST00000543545	PLP1	P60201	277 aa		7.7	□□□□□ -1.18
CPSF7-221	ENST00000543545	DEFB114	Q30KQ6	69 aa		7.7	□□□□□ -1.18
CPSF7-221	ENST00000543545	ADAMTSL5	Q6ZMM2	481 aa		7.7	□□□□□ -1.18
CPSF7-221	ENST00000543545	OR8I2	Q8N0Y5	310 aa		7.7	□□□□□ -1.18
CPSF7-221	ENST00000543545	C9orf62	Q8N4C0	152 aa		7.7	□□□□□ -1.18
CPSF7-221	ENST00000543545	OR2G3	Q8NGZ4	309 aa		7.7	□□□□□ -1.18
CPSF7-221	ENST00000543545	PFDN5	Q99471	154 aa		7.7	□□□□□ -1.18
CPSF7-221	ENST00000543545	ARV1	Q9H2C2	271 aa		7.7	□□□□□ -1.18
CPSF7-221	ENST00000543545	SLC25A22	Q9H936	323 aa		7.7	□□□□□ -1.18
CPSF7-221	ENST00000543545	CYTL1	Q9NRR1	136 aa		7.7	□□□□□ -1.18
CPSF7-221	ENST00000543545	SIGLEC8	Q9NYZ4	499 aa		7.7	□□□□□ -1.18
CPSF7-221	ENST00000543545	MLX	Q9UH92	298 aa		7.7	□□□□□ -1.18
CPSF7-221	ENST00000543545	TIMM9	Q9Y5J7	89 aa		7.7	□□□□□ -1.18
CPSF7-221	ENST00000543545	RFNG	Q9Y644	331 aa		7.7	□□□□□ -1.18
CPSF7-221	ENST00000543545	NOTCH3	Q9UM47	2321 aa		7.7	□□□□□ -1.18
CPSF7-221	ENST00000543545	TRRAP	Q9Y4A5	3859 aa		7.7	□□□□□ -1.18
CPSF7-221	ENST00000543545	IGKV3-7	A0A075B6H7	116 aa		7.69	□□□□□ -1.18
CPSF7-221	ENST00000543545	BUB3	O43684	328 aa		7.69	□□□□□ -1.18
CPSF7-221	ENST00000543545	TPT1	P13693	172 aa	Known RBP	7.69	□□□□□ -1.18
CPSF7-221	ENST00000543545	GUCA2B	Q16661	112 aa		7.69	□□□□□ -1.18
CPSF7-221	ENST00000543545	ACOT6	Q3I5F7	207 aa	Predicted RBP	7.69	□□□□□ -1.18
CPSF7-221	ENST00000543545	CD300E	Q496F6	205 aa	Predicted RBP	7.69	□□□□□ -1.18
CPSF7-221	ENST00000543545	GCSAML	Q5JQS6	135 aa		7.69	□□□□□ -1.18
CPSF7-221	ENST00000543545	LEMD1	Q68G75	181 aa		7.69	□□□□□ -1.18
CPSF7-221	ENST00000543545	PATE2	Q6UY27	113 aa		7.69	□□□□□ -1.18
CPSF7-221	ENST00000543545	TCF24	Q7RTU0	167 aa		7.69	□□□□□ -1.18
CPSF7-221	ENST00000543545	LINC00305	Q7Z4B0	112 aa		7.69	□□□□□ -1.18
CPSF7-221	ENST00000543545	GATAD1	Q8WUU5	269 aa		7.69	□□□□□ -1.18
CPSF7-221	ENST00000543545	UHRF2	Q96PU4	802 aa		7.69	□□□□□ -1.18
CPSF7-221	ENST00000543545	RNF2	Q99496	336 aa		7.69	□□□□□ -1.18
CPSF7-221	ENST00000543545	SCRT1	Q9BWW7	348 aa		7.69	□□□□□ -1.18
CPSF7-221	ENST00000543545	SLC25A39	Q9BZJ4	359 aa	Predicted RBP	7.69	□□□□□ -1.18
CPSF7-221	ENST00000543545	SH3BGRL3	Q9H299	93 aa		7.69	□□□□□ -1.18
CPSF7-221	ENST00000543545	SLC25A32	Q9H2D1	315 aa		7.69	□□□□□ -1.18
CPSF7-221	ENST00000543545	VSIR	Q9H7M9	311 aa		7.69	□□□□□ -1.18
CPSF7-221	ENST00000543545		U3KQE9	123 aa		7.69	□□□□□ -1.18
CPSF7-221	ENST00000543545	HELT	A6NFD8	242 aa		7.68	□□□□□ -1.18
CPSF7-221	ENST00000543545	ZNF98	A6NK75	572 aa		7.68	□□□□□ -1.18
CPSF7-221	ENST00000543545	ZNF785	A8K8V0	405 aa		7.68	□□□□□ -1.18
CPSF7-221	ENST00000543545		G3V4G9	280 aa		7.68	□□□□□ -1.18
CPSF7-221	ENST00000543545	DNASE2	O00115	360 aa	Predicted RBP	7.68	□□□□□ -1.18
CPSF7-221	ENST00000543545	IGLV1-51	P01701	117 aa		7.68	□□□□□ -1.18
CPSF7-221	ENST00000543545	TFPI2	P48307	235 aa		7.68	□□□□□ -1.18
CPSF7-221	ENST00000543545	AKR1C8P	Q5T2L2	129 aa		7.68	□□□□□ -1.18
CPSF7-221	ENST00000543545	C1orf194	Q5T5A4	169 aa		7.68	□□□□□ -1.18
CPSF7-221	ENST00000543545	FAM78B	Q5VT40	261 aa		7.68	□□□□□ -1.18
CPSF7-221	ENST00000543545	LCN12	Q6JVE5	192 aa		7.68	□□□□□ -1.18
CPSF7-221	ENST00000543545	C16orf54	Q6UWD8	224 aa		7.68	□□□□□ -1.18
CPSF7-221	ENST00000543545	WFDC3	Q8IUB2	231 aa		7.68	□□□□□ -1.18
CPSF7-221	ENST00000543545	GBGT1	Q8N5D6	347 aa		7.68	□□□□□ -1.18
CPSF7-221	ENST00000543545	TMEM37	Q8WXS4	190 aa		7.68	□□□□□ -1.18
CPSF7-221	ENST00000543545	PSMG3	Q9BT73	122 aa	Predicted RBP	7.68	□□□□□ -1.18
CPSF7-221	ENST00000543545	SHANK2-AS3	Q9BTD1	123 aa		7.68	□□□□□ -1.18
CPSF7-221	ENST00000543545	ZMAT5	Q9UDW3	170 aa	Known RBP	7.68	□□□□□ -1.18
CPSF7-221	ENST00000543545	RNF24	Q9Y225	148 aa		7.68	□□□□□ -1.18
CPSF7-221	ENST00000543545	TRAV5	A0A0B4J249	113 aa		7.67	□□□□□ -1.18
CPSF7-221	ENST00000543545	TRAV25	A0A0B4J276	109 aa		7.67	□□□□□ -1.18
CPSF7-221	ENST00000543545		A0A1W2PPV4	95 aa		7.67	□□□□□ -1.18
CPSF7-221	ENST00000543545		H3BRN7	92 aa		7.67	□□□□□ -1.18
CPSF7-221	ENST00000543545	BOLA2-SMG1P6	H3BVE0	249 aa		7.67	□□□□□ -1.18
CPSF7-221	ENST00000543545	MB	P02144	154 aa		7.67	□□□□□ -1.18
CPSF7-221	ENST00000543545	CD5	P06127	495 aa		7.67	□□□□□ -1.18
CPSF7-221	ENST00000543545	M6PR	P20645	277 aa		7.67	□□□□□ -1.18
CPSF7-221	ENST00000543545	GALR1	P47211	349 aa		7.67	□□□□□ -1.18
CPSF7-221	ENST00000543545	RAB2A	P61019	212 aa		7.67	□□□□□ -1.18
CPSF7-221	ENST00000543545	PAFAH1B2	P68402	229 aa		7.67	□□□□□ -1.18
CPSF7-221	ENST00000543545	SERF2	P84101	59 aa		7.67	□□□□□ -1.18

Retrieved 100 of 20,778 RNA–protein pairs in 172.5 ms