RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 ARL6Q9H0F7 186 aa12.97□□□□□ -0.33
LIG1-204ENST00000542460 KCNIP2Q9NS61 270 aa12.97□□□□□ -0.33
LIG1-204ENST00000542460 MLXQ9UH92 298 aa12.97□□□□□ -0.33
LIG1-204ENST00000542460 U3KQE9 123 aa12.97□□□□□ -0.33
LIG1-204ENST00000542460 CMYA5Q8N3K9 4069 aa12.97□□□□□ -0.33
LIG1-204ENST00000542460 IGHV3-49A0A0A0MS15 119 aa12.96□□□□□ -0.33
LIG1-204ENST00000542460 BORCS7-ASMTA0A0B4J1R7 106 aa12.96□□□□□ -0.33
LIG1-204ENST00000542460 HYPMO75409 117 aa12.96□□□□□ -0.33
LIG1-204ENST00000542460 APOHP02749 345 aaPredicted RBP12.96□□□□□ -0.33
LIG1-204ENST00000542460 CXCL2P19875 107 aa12.96□□□□□ -0.33
LIG1-204ENST00000542460 DEFB114Q30KQ6 69 aa12.96□□□□□ -0.33
LIG1-204ENST00000542460 SAMD5Q5TGI4 173 aa12.96□□□□□ -0.33
LIG1-204ENST00000542460 TMEM231Q9H6L2 316 aa12.96□□□□□ -0.33
LIG1-204ENST00000542460 VSIRQ9H7M9 311 aa12.96□□□□□ -0.33
LIG1-204ENST00000542460 SLC39A9Q9NUM3 307 aa12.96□□□□□ -0.33
LIG1-204ENST00000542460 PXMP4Q9Y6I8 212 aa12.96□□□□□ -0.33
LIG1-204ENST00000542460 IGHV3OR16-13A0A075B7E8 117 aa12.95□□□□□ -0.34
LIG1-204ENST00000542460 IGHV3-74A0A0B4J1X5 117 aa12.95□□□□□ -0.34
LIG1-204ENST00000542460 G3V4G9 280 aa12.95□□□□□ -0.34
LIG1-204ENST00000542460 S100A7P31151 101 aa12.95□□□□□ -0.34
LIG1-204ENST00000542460 B2MP61769 119 aa12.95□□□□□ -0.34
LIG1-204ENST00000542460 RPL7L1Q6DKI1 246 aaKnown RBP12.95□□□□□ -0.34
LIG1-204ENST00000542460 S100A7AQ86SG5 101 aa12.95□□□□□ -0.34
LIG1-204ENST00000542460 OR2K2Q8NGT1 345 aa12.95□□□□□ -0.34
LIG1-204ENST00000542460 ST8SIA2Q92186 375 aa12.95□□□□□ -0.34
LIG1-204ENST00000542460 GRAMD2BQ96HH9 432 aa12.95□□□□□ -0.34
LIG1-204ENST00000542460 ARPC5LQ9BPX5 153 aa12.95□□□□□ -0.34
LIG1-204ENST00000542460 DOK5Q9P104 306 aa12.95□□□□□ -0.34
LIG1-204ENST00000542460 NOTCH3Q9UM47 2321 aa12.94□□□□□ -0.34
LIG1-204ENST00000542460 JTBO76095 146 aa12.94□□□□□ -0.34
LIG1-204ENST00000542460 OR5G3P0C626 314 aa12.94□□□□□ -0.34
LIG1-204ENST00000542460 RSG1Q9BU20 258 aa12.94□□□□□ -0.34
LIG1-204ENST00000542460 HIGD1AQ9Y241 93 aa12.94□□□□□ -0.34
LIG1-204ENST00000542460 ELOA3CA0A087WX78 387 aaPredicted RBP12.93□□□□□ -0.34
LIG1-204ENST00000542460 IGHV3-66A0A0C4DH42 116 aa12.93□□□□□ -0.34
LIG1-204ENST00000542460 BUB3O43684 328 aa12.93□□□□□ -0.34
LIG1-204ENST00000542460 COX7A2P2O60397 106 aa12.93□□□□□ -0.34
LIG1-204ENST00000542460 CD5P06127 495 aa12.93□□□□□ -0.34
LIG1-204ENST00000542460 CD300EQ496F6 205 aaPredicted RBP12.93□□□□□ -0.34
LIG1-204ENST00000542460 PATE2Q6UY27 113 aa12.93□□□□□ -0.34
LIG1-204ENST00000542460 TMUB2Q71RG4 321 aa12.93□□□□□ -0.34
LIG1-204ENST00000542460 RNF2Q99496 336 aa12.93□□□□□ -0.34
LIG1-204ENST00000542460 ARV1Q9H2C2 271 aa12.93□□□□□ -0.34
LIG1-204ENST00000542460 DNAJC4Q9NNZ3 241 aa12.93□□□□□ -0.34
LIG1-204ENST00000542460 ZMAT5Q9UDW3 170 aaKnown RBP12.93□□□□□ -0.34
LIG1-204ENST00000542460 TIMM9Q9Y5J7 89 aa12.93□□□□□ -0.34
LIG1-204ENST00000542460 MEGF8Q7Z7M0 2845 aa12.93□□□□□ -0.34
LIG1-204ENST00000542460 KANTRA0A1W2PQU2 76 aa12.93□□□□□ -0.34
LIG1-204ENST00000542460 LGALSLQ3ZCW2 172 aaPredicted RBP12.93□□□□□ -0.34
LIG1-204ENST00000542460 LAMTOR1Q6IAA8 161 aa12.93□□□□□ -0.34
LIG1-204ENST00000542460 HSD17B11Q8NBQ5 300 aa12.93□□□□□ -0.34
LIG1-204ENST00000542460 OR1L4Q8NGR5 311 aa12.93□□□□□ -0.34
LIG1-204ENST00000542460 PFDN5Q99471 154 aa12.93□□□□□ -0.34
LIG1-204ENST00000542460 CYTL1Q9NRR1 136 aa12.93□□□□□ -0.34
LIG1-204ENST00000542460 TRAV25A0A0B4J276 109 aa12.92□□□□□ -0.34
LIG1-204ENST00000542460 BCL2L11O43521 198 aa12.92□□□□□ -0.34
LIG1-204ENST00000542460 EGFEM1PQ0D2K5 195 aa12.92□□□□□ -0.34
LIG1-204ENST00000542460 C1orf194Q5T5A4 169 aa12.92□□□□□ -0.34
LIG1-204ENST00000542460 C10orf113Q5VZT2 155 aa12.92□□□□□ -0.34
LIG1-204ENST00000542460 LCN12Q6JVE5 192 aa12.92□□□□□ -0.34
LIG1-204ENST00000542460 C16orf54Q6UWD8 224 aa12.92□□□□□ -0.34
LIG1-204ENST00000542460 RBPMS2Q6ZRY4 209 aaKnown RBP12.92□□□□□ -0.34
LIG1-204ENST00000542460 TMEM37Q8WXS4 190 aa12.92□□□□□ -0.34
LIG1-204ENST00000542460 GNPNAT1Q96EK6 184 aaPredicted RBP12.92□□□□□ -0.34
LIG1-204ENST00000542460 SLC25A39Q9BZJ4 359 aaPredicted RBP12.92□□□□□ -0.34
LIG1-204ENST00000542460 SELENOKQ9Y6D0 94 aa12.92□□□□□ -0.34
LIG1-204ENST00000542460 ZNF98A6NK75 572 aa12.91□□□□□ -0.34
LIG1-204ENST00000542460 ATP6V0CP27449 155 aa12.91□□□□□ -0.34
LIG1-204ENST00000542460 LINC00305Q7Z4B0 112 aa12.91□□□□□ -0.34
LIG1-204ENST00000542460 TMEM61Q8N0U2 210 aa12.91□□□□□ -0.34
LIG1-204ENST00000542460 GATAD1Q8WUU5 269 aa12.91□□□□□ -0.34
LIG1-204ENST00000542460 UHRF2Q96PU4 802 aa12.91□□□□□ -0.34
LIG1-204ENST00000542460 PSMG3Q9BT73 122 aaPredicted RBP12.91□□□□□ -0.34
LIG1-204ENST00000542460 SHANK2-AS3Q9BTD1 123 aa12.91□□□□□ -0.34
LIG1-204ENST00000542460 RNF24Q9Y225 148 aa12.91□□□□□ -0.34
LIG1-204ENST00000542460 HELTA6NFD8 242 aa12.9□□□□□ -0.34
LIG1-204ENST00000542460 H3BRN7 92 aa12.9□□□□□ -0.34
LIG1-204ENST00000542460 FFAR4Q5NUL3 377 aa12.9□□□□□ -0.34
LIG1-204ENST00000542460 FAM90A2PQ658T7 463 aa12.9□□□□□ -0.34
LIG1-204ENST00000542460 TCF24Q7RTU0 167 aa12.9□□□□□ -0.34
LIG1-204ENST00000542460 GLMPQ8WWB7 406 aa12.9□□□□□ -0.34
LIG1-204ENST00000542460 IZUMO1RA6ND01 250 aa12.89□□□□□ -0.35
LIG1-204ENST00000542460 TSPAN4O14817 238 aa12.89□□□□□ -0.35
LIG1-204ENST00000542460 OR8I2Q8N0Y5 310 aa12.89□□□□□ -0.35
LIG1-204ENST00000542460 ZNF471Q9BX82 626 aaPredicted RBP12.89□□□□□ -0.35
LIG1-204ENST00000542460 RFNGQ9Y644 331 aa12.89□□□□□ -0.35
LIG1-204ENST00000542460 RPL11P62913 178 aaKnown RBP12.88□□□□□ -0.35
LIG1-204ENST00000542460 EIF5AP63241 154 aaKnown RBP12.88□□□□□ -0.35
LIG1-204ENST00000542460 SERF2P84101 59 aa12.88□□□□□ -0.35
LIG1-204ENST00000542460 BEAN1Q3B7T3 259 aa12.88□□□□□ -0.35
LIG1-204ENST00000542460 GCSAMLQ5JQS6 135 aa12.88□□□□□ -0.35
LIG1-204ENST00000542460 KPRPQ5T749 579 aaPredicted RBP12.88□□□□□ -0.35
LIG1-204ENST00000542460 C9orf62Q8N4C0 152 aa12.88□□□□□ -0.35
LIG1-204ENST00000542460 OR2G3Q8NGZ4 309 aa12.88□□□□□ -0.35
LIG1-204ENST00000542460 GPR82Q96P67 336 aa12.88□□□□□ -0.35
LIG1-204ENST00000542460 SCRT1Q9BWW7 348 aa12.88□□□□□ -0.35
LIG1-204ENST00000542460 SLC25A22Q9H936 323 aa12.88□□□□□ -0.35
LIG1-204ENST00000542460 ZNF785A8K8V0 405 aa12.88□□□□□ -0.35
LIG1-204ENST00000542460 KRTAP10-11P60412 298 aa12.88□□□□□ -0.35
LIG1-204ENST00000542460 GUCA2BQ16661 112 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms