RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 NDUFA7O95182 113 aa13.69□□□□□ -0.22
CLIP1-215ENST00000541108 RPLP1P05386 114 aaKnown RBP13.69□□□□□ -0.22
CLIP1-215ENST00000541108 FAM167A-AS1Q96KT0 104 aa13.69□□□□□ -0.22
CLIP1-215ENST00000541108 SLC25A39Q9BZJ4 359 aaPredicted RBP13.69□□□□□ -0.22
CLIP1-215ENST00000541108 GNB4Q9HAV0 340 aa13.69□□□□□ -0.22
CLIP1-215ENST00000541108 MANBALQ9NQG1 85 aa13.69□□□□□ -0.22
CLIP1-215ENST00000541108 GNG13Q9P2W3 67 aa13.69□□□□□ -0.22
CLIP1-215ENST00000541108 BMPR1BO00238 502 aa13.69□□□□□ -0.22
CLIP1-215ENST00000541108 IGHV3-11P01762 117 aa13.69□□□□□ -0.22
CLIP1-215ENST00000541108 USF2Q15853 346 aaPredicted RBP13.69□□□□□ -0.22
CLIP1-215ENST00000541108 TOR2AQ5JU69 321 aa13.69□□□□□ -0.22
CLIP1-215ENST00000541108 MORN5Q5VZ52 161 aa13.69□□□□□ -0.22
CLIP1-215ENST00000541108 TOMM20LQ6UXN7 152 aa13.69□□□□□ -0.22
CLIP1-215ENST00000541108 OR5AU1Q8NGC0 362 aa13.69□□□□□ -0.22
CLIP1-215ENST00000541108 ZNF414Q96IQ9 312 aa13.69□□□□□ -0.22
CLIP1-215ENST00000541108 SLC25A2Q9BXI2 301 aa13.69□□□□□ -0.22
CLIP1-215ENST00000541108 TMPRSS5Q9H3S3 457 aa13.69□□□□□ -0.22
CLIP1-215ENST00000541108 TMEM167BQ9NRX6 74 aa13.69□□□□□ -0.22
CLIP1-215ENST00000541108 PEF1Q9UBV8 284 aaKnown RBP13.69□□□□□ -0.22
CLIP1-215ENST00000541108 ANKRD34BA5PLL1 514 aa13.68□□□□□ -0.22
CLIP1-215ENST00000541108 CYSRT1A8MQ03 144 aa13.68□□□□□ -0.22
CLIP1-215ENST00000541108 PPP5D1E7EU14 171 aa13.68□□□□□ -0.22
CLIP1-215ENST00000541108 BCL2P10415 239 aa13.68□□□□□ -0.22
CLIP1-215ENST00000541108 GCHFRP30047 84 aa13.68□□□□□ -0.22
CLIP1-215ENST00000541108 SRSF3P84103 164 aaKnown RBP13.68□□□□□ -0.22
CLIP1-215ENST00000541108 ZNF506Q5JVG8 444 aa13.68□□□□□ -0.22
CLIP1-215ENST00000541108 LINC01006Q8NI28 216 aa13.68□□□□□ -0.22
CLIP1-215ENST00000541108 SUN5Q8TC36 379 aa13.68□□□□□ -0.22
CLIP1-215ENST00000541108 WIPF2Q8TF74 440 aaPredicted RBP13.68□□□□□ -0.22
CLIP1-215ENST00000541108 SHANK2-AS3Q9BTD1 123 aa13.68□□□□□ -0.22
CLIP1-215ENST00000541108 ZFAND3Q9H8U3 227 aa13.68□□□□□ -0.22
CLIP1-215ENST00000541108 F8P00451 2351 aa13.68□□□□□ -0.22
CLIP1-215ENST00000541108 FN1P02751 2386 aaKnown RBP13.68□□□□□ -0.22
CLIP1-215ENST00000541108 CUBNO60494 3623 aa13.68□□□□□ -0.22
CLIP1-215ENST00000541108 TRAV5A0A0B4J249 113 aa13.67□□□□□ -0.22
CLIP1-215ENST00000541108 OR7C2O60412 319 aa13.67□□□□□ -0.22
CLIP1-215ENST00000541108 GGCTO75223 188 aaKnown RBP13.67□□□□□ -0.22
CLIP1-215ENST00000541108 HAGHQ16775 308 aa13.67□□□□□ -0.22
CLIP1-215ENST00000541108 IQCF2Q8IXL9 164 aa13.67□□□□□ -0.22
CLIP1-215ENST00000541108 WFDC12Q8WWY7 111 aa13.67□□□□□ -0.22
CLIP1-215ENST00000541108 ZNF503Q96F45 646 aa13.67□□□□□ -0.22
CLIP1-215ENST00000541108 RABAC1Q9UI14 185 aa13.67□□□□□ -0.22
CLIP1-215ENST00000541108 VAX2Q9UIW0 290 aa13.67□□□□□ -0.22
CLIP1-215ENST00000541108 LOC102723971A0A1B0GUV8 181 aa13.66□□□□□ -0.22
CLIP1-215ENST00000541108 H3BRN7 92 aa13.66□□□□□ -0.22
CLIP1-215ENST00000541108 I3L521 148 aa13.66□□□□□ -0.22
CLIP1-215ENST00000541108 NDUFA4O00483 81 aa13.66□□□□□ -0.22
CLIP1-215ENST00000541108 NDUFS6O75380 124 aaKnown RBP13.66□□□□□ -0.22
CLIP1-215ENST00000541108 TRBV12-3P01733 135 aa13.66□□□□□ -0.22
CLIP1-215ENST00000541108 CDX1P47902 265 aaPredicted RBP13.66□□□□□ -0.22
CLIP1-215ENST00000541108 RARRES2Q99969 163 aa13.66□□□□□ -0.22
CLIP1-215ENST00000541108 TXNDC17Q9BRA2 123 aa13.66□□□□□ -0.22
CLIP1-215ENST00000541108 OR51M1Q9H341 326 aa13.66□□□□□ -0.22
CLIP1-215ENST00000541108 TREM1Q9NP99 234 aa13.66□□□□□ -0.22
CLIP1-215ENST00000541108 ARL2-SNX15V9GYD0 113 aa13.66□□□□□ -0.22
CLIP1-215ENST00000541108 IGHV3-35A0A0C4DH35 117 aa13.66□□□□□ -0.22
CLIP1-215ENST00000541108 KRBOX1C9JBD0 128 aa13.66□□□□□ -0.22
CLIP1-215ENST00000541108 HSPB1P04792 205 aaKnown RBP13.66□□□□□ -0.22
CLIP1-215ENST00000541108 LGALS1P09382 135 aaKnown RBP13.66□□□□□ -0.22
CLIP1-215ENST00000541108 TMEM14CQ9P0S9 112 aa13.66□□□□□ -0.22
CLIP1-215ENST00000541108 NF1P21359 2839 aa13.65□□□□□ -0.22
CLIP1-215ENST00000541108 ZNF98A6NK75 572 aa13.65□□□□□ -0.22
CLIP1-215ENST00000541108 ICAM4Q14773 271 aa13.65□□□□□ -0.22
CLIP1-215ENST00000541108 OR4F5Q8NH21 305 aa13.65□□□□□ -0.22
CLIP1-215ENST00000541108 PAXXQ9BUH6 204 aa13.65□□□□□ -0.22
CLIP1-215ENST00000541108 TMEM231Q9H6L2 316 aa13.65□□□□□ -0.22
CLIP1-215ENST00000541108 TMEM218A2RU14 115 aa13.64□□□□□ -0.23
CLIP1-215ENST00000541108 MEF2BQ02080 365 aaPredicted RBP13.64□□□□□ -0.23
CLIP1-215ENST00000541108 BPIFA4PQ86YQ2 179 aa13.63□□□□□ -0.23
CLIP1-215ENST00000541108 GPHB5Q86YW7 130 aa13.63□□□□□ -0.23
CLIP1-215ENST00000541108 SLC35B3Q9H1N7 401 aa13.63□□□□□ -0.23
CLIP1-215ENST00000541108 CLPSL1A2RUU4 121 aa13.63□□□□□ -0.23
CLIP1-215ENST00000541108 PAGE4O60829 102 aa13.63□□□□□ -0.23
CLIP1-215ENST00000541108 OR10J4P0C629 311 aa13.63□□□□□ -0.23
CLIP1-215ENST00000541108 NPPCP23582 126 aa13.63□□□□□ -0.23
CLIP1-215ENST00000541108 CRYBB3P26998 211 aa13.63□□□□□ -0.23
CLIP1-215ENST00000541108 UBE2L3P68036 154 aaKnown RBP13.63□□□□□ -0.23
CLIP1-215ENST00000541108 TCTEX1D4Q5JR98 221 aa13.63□□□□□ -0.23
CLIP1-215ENST00000541108 RXFP4Q8TDU9 374 aa13.63□□□□□ -0.23
CLIP1-215ENST00000541108 FXYD5Q96DB9 178 aa13.63□□□□□ -0.23
CLIP1-215ENST00000541108 NARS2Q96I59 477 aaKnown RBP13.63□□□□□ -0.23
CLIP1-215ENST00000541108 OR5B12Q96R08 314 aa13.63□□□□□ -0.23
CLIP1-215ENST00000541108 METTL26Q96S19 204 aa13.63□□□□□ -0.23
CLIP1-215ENST00000541108 A0A1W2PRE2 83 aa13.62□□□□□ -0.23
CLIP1-215ENST00000541108 C9JQL5 133 aa13.62□□□□□ -0.23
CLIP1-215ENST00000541108 GP9P14770 177 aa13.62□□□□□ -0.23
CLIP1-215ENST00000541108 FAM106AQ4KMX7 169 aa13.62□□□□□ -0.23
CLIP1-215ENST00000541108 LEMD1Q68G75 181 aa13.62□□□□□ -0.23
CLIP1-215ENST00000541108 NKX6-2Q9C056 277 aaPredicted RBP13.62□□□□□ -0.23
CLIP1-215ENST00000541108 BUB3O43684 328 aa13.61□□□□□ -0.23
CLIP1-215ENST00000541108 PYYP10082 97 aa13.61□□□□□ -0.23
CLIP1-215ENST00000541108 ZP3P21754 424 aa13.61□□□□□ -0.23
CLIP1-215ENST00000541108 C1orf194Q5T5A4 169 aa13.61□□□□□ -0.23
CLIP1-215ENST00000541108 C4orf3Q8WVX3 66 aa13.61□□□□□ -0.23
CLIP1-215ENST00000541108 TMEM190Q8WZ59 177 aa13.61□□□□□ -0.23
CLIP1-215ENST00000541108 RNF114Q9Y508 228 aa13.61□□□□□ -0.23
CLIP1-215ENST00000541108 U3KQE9 123 aa13.61□□□□□ -0.23
CLIP1-215ENST00000541108 FAM74A7A6NL05 159 aa13.6□□□□□ -0.23
CLIP1-215ENST00000541108 C11orf94C9JXX5 98 aa13.6□□□□□ -0.23
CLIP1-215ENST00000541108 SRP19P09132 144 aaKnown RBP13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms