RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 PVRIGQ6DKI7 326 aa7.2□□□□□ -1.26
YBX3-208ENST00000540447 MRPL35Q9NZE8 188 aaKnown RBP7.2□□□□□ -1.26
YBX3-208ENST00000540447 DKK2Q9UBU2 259 aa7.2□□□□□ -1.26
YBX3-208ENST00000540447 TRAV41A0A0B4J266 112 aa7.19□□□□□ -1.26
YBX3-208ENST00000540447 TMEM42Q69YG0 159 aa7.19□□□□□ -1.26
YBX3-208ENST00000540447 SCARF2Q96GP6 870 aaPredicted RBP7.19□□□□□ -1.26
YBX3-208ENST00000540447 LINC00527Q9UJ94 153 aa7.19□□□□□ -1.26
YBX3-208ENST00000540447 ATP5G1P05496 136 aa7.19□□□□□ -1.26
YBX3-208ENST00000540447 CD7P09564 240 aa7.19□□□□□ -1.26
YBX3-208ENST00000540447 PRB4P10163 310 aaPredicted RBP7.19□□□□□ -1.26
YBX3-208ENST00000540447 SSC4DQ8WTU2 575 aa7.19□□□□□ -1.26
YBX3-208ENST00000540447 RNF125Q96EQ8 232 aa7.19□□□□□ -1.26
YBX3-208ENST00000540447 SLC50A1Q9BRV3 221 aa7.19□□□□□ -1.26
YBX3-208ENST00000540447 JPT2Q9H910 190 aa7.19□□□□□ -1.26
YBX3-208ENST00000540447 ZNF492Q9P255 531 aa7.19□□□□□ -1.26
YBX3-208ENST00000540447 COL22A1Q8NFW1 1626 aaPredicted RBP7.19□□□□□ -1.26
YBX3-208ENST00000540447 FOCADQ5VW36 1801 aa7.19□□□□□ -1.26
YBX3-208ENST00000540447 IGHV1OR21-1A0A087WYE8 117 aa7.19□□□□□ -1.26
YBX3-208ENST00000540447 VCYO14598 125 aa7.19□□□□□ -1.26
YBX3-208ENST00000540447 C1orf195Q5TG92 126 aa7.19□□□□□ -1.26
YBX3-208ENST00000540447 ZNF747Q9BV97 191 aa7.19□□□□□ -1.26
YBX3-208ENST00000540447 IGKV2-40A0A087WW87 121 aaPredicted RBP7.19□□□□□ -1.26
YBX3-208ENST00000540447 IGKV2D-40P01614 121 aaPredicted RBP7.19□□□□□ -1.26
YBX3-208ENST00000540447 SNRPD3P62318 126 aaKnown RBP7.19□□□□□ -1.26
YBX3-208ENST00000540447 FAM104BQ5XKR9 115 aa7.19□□□□□ -1.26
YBX3-208ENST00000540447 TP53BP1Q12888 1972 aaPredicted RBP7.19□□□□□ -1.26
YBX3-208ENST00000540447 CELA2BP08218 269 aaPredicted RBP7.19□□□□□ -1.26
YBX3-208ENST00000540447 SPEM2Q0P670 501 aa7.19□□□□□ -1.26
YBX3-208ENST00000540447 STPG1Q5TH74 334 aa7.19□□□□□ -1.26
YBX3-208ENST00000540447 IL17RELQ6ZVW7 336 aa7.19□□□□□ -1.26
YBX3-208ENST00000540447 DEFB104AQ8WTQ1 72 aa7.19□□□□□ -1.26
YBX3-208ENST00000540447 UQCRQO14949 82 aa7.18□□□□□ -1.26
YBX3-208ENST00000540447 PMS2CLQ68D20 193 aa7.18□□□□□ -1.26
YBX3-208ENST00000540447 Q8N8P6 123 aa7.18□□□□□ -1.26
YBX3-208ENST00000540447 C21orf62Q9NYP8 219 aa7.18□□□□□ -1.26
YBX3-208ENST00000540447 HAX1O00165 279 aa7.18□□□□□ -1.26
YBX3-208ENST00000540447 CISD3P0C7P0 127 aa7.18□□□□□ -1.26
YBX3-208ENST00000540447 ACP7Q6ZNF0 438 aa7.18□□□□□ -1.26
YBX3-208ENST00000540447 LYZL4Q96KX0 146 aa7.18□□□□□ -1.26
YBX3-208ENST00000540447 RPUSD1Q9UJJ7 312 aaKnown RBP7.18□□□□□ -1.26
YBX3-208ENST00000540447 BCORQ6W2J9 1755 aa7.18□□□□□ -1.26
YBX3-208ENST00000540447 H0YJW9 148 aa7.18□□□□□ -1.26
YBX3-208ENST00000540447 NDUFS7O75251 213 aa7.18□□□□□ -1.26
YBX3-208ENST00000540447 FXYD2P54710 66 aa7.18□□□□□ -1.26
YBX3-208ENST00000540447 PRB3Q04118 309 aaPredicted RBP7.18□□□□□ -1.26
YBX3-208ENST00000540447 LDLRAD1Q5T700 205 aa7.18□□□□□ -1.26
YBX3-208ENST00000540447 DPH3P1Q9H4G8 78 aa7.18□□□□□ -1.26
YBX3-208ENST00000540447 SPANXB1Q9NS25 103 aaPredicted RBP7.18□□□□□ -1.26
YBX3-208ENST00000540447 SNRNP200O75643 2136 aaKnown RBP7.18□□□□□ -1.26
YBX3-208ENST00000540447 TRBV25-1A0A075B6N4 114 aa7.18□□□□□ -1.26
YBX3-208ENST00000540447 TMEM213A2RRL7 107 aa7.18□□□□□ -1.26
YBX3-208ENST00000540447 NDUFB8O95169 186 aa7.18□□□□□ -1.26
YBX3-208ENST00000540447 RNASE2P10153 161 aaKnown RBP7.18□□□□□ -1.26
YBX3-208ENST00000540447 ZNF497Q6ZNH5 498 aa7.18□□□□□ -1.26
YBX3-208ENST00000540447 TNRC6AQ8NDV7 1962 aaKnown RBP7.17□□□□□ -1.26
YBX3-208ENST00000540447 LYPD3O95274 346 aa7.17□□□□□ -1.26
YBX3-208ENST00000540447 FAM231DQ6ZW35 169 aa7.17□□□□□ -1.26
YBX3-208ENST00000540447 Q86TA4 180 aa7.17□□□□□ -1.26
YBX3-208ENST00000540447 TUBGCP6Q96RT7 1819 aa7.17□□□□□ -1.26
YBX3-208ENST00000540447 TINCRA0A1B0GVN0 87 aa7.17□□□□□ -1.26
YBX3-208ENST00000540447 SPAARA0A1B0GVQ0 90 aa7.17□□□□□ -1.26
YBX3-208ENST00000540447 MALP21145 153 aa7.17□□□□□ -1.26
YBX3-208ENST00000540447 CCL8P80075 99 aa7.17□□□□□ -1.26
YBX3-208ENST00000540447 EIF4EBP2Q13542 120 aaPredicted RBP7.17□□□□□ -1.26
YBX3-208ENST00000540447 IL11RAQ14626 422 aa7.17□□□□□ -1.26
YBX3-208ENST00000540447 ZNF474Q6S9Z5 364 aaPredicted RBP7.17□□□□□ -1.26
YBX3-208ENST00000540447 ZNRF1Q8ND25 227 aa7.17□□□□□ -1.26
YBX3-208ENST00000540447 RGPD2P0DJD1 1756 aa7.17□□□□□ -1.26
YBX3-208ENST00000540447 A0A0G2JRQ6 117 aa7.17□□□□□ -1.26
YBX3-208ENST00000540447 PMS2P5A8MQ11 134 aa7.17□□□□□ -1.26
YBX3-208ENST00000540447 KLF14Q8TD94 323 aaPredicted RBP7.17□□□□□ -1.26
YBX3-208ENST00000540447 TRGV8A0A0C4DH27 118 aa7.17□□□□□ -1.26
YBX3-208ENST00000540447 DUTP33316 252 aaKnown RBP7.17□□□□□ -1.26
YBX3-208ENST00000540447 ABCA7Q8IZY2 2146 aa7.17□□□□□ -1.26
YBX3-208ENST00000540447 TOPAZ1Q8N9V7 1692 aa7.17□□□□□ -1.26
YBX3-208ENST00000540447 C15orf62A8K5M9 175 aa7.17□□□□□ -1.26
YBX3-208ENST00000540447 F8VRH5 84 aa7.17□□□□□ -1.26
YBX3-208ENST00000540447 FOXG1P55316 489 aaPredicted RBP7.17□□□□□ -1.26
YBX3-208ENST00000540447 HERVK_113P63121 156 aa7.17□□□□□ -1.26
YBX3-208ENST00000540447 QRFPP83859 136 aa7.17□□□□□ -1.26
YBX3-208ENST00000540447 CR1LQ2VPA4 569 aa7.17□□□□□ -1.26
YBX3-208ENST00000540447 DCTN5Q9BTE1 182 aa7.17□□□□□ -1.26
YBX3-208ENST00000540447 IGHV3OR16-8A0A075B7F1 116 aa7.16□□□□□ -1.26
YBX3-208ENST00000540447 C5orf64Q2M2E5 130 aa7.16□□□□□ -1.26
YBX3-208ENST00000540447 ATAD5Q96QE3 1844 aa7.16□□□□□ -1.26
YBX3-208ENST00000540447 IGKV3D-7A0A0C4DH55 119 aa7.16□□□□□ -1.26
YBX3-208ENST00000540447 IGHG2P01859 326 aa7.16□□□□□ -1.26
YBX3-208ENST00000540447 MRPL51Q4U2R6 128 aaKnown RBP7.16□□□□□ -1.26
YBX3-208ENST00000540447 PRIMA1Q86XR5 153 aa7.16□□□□□ -1.26
YBX3-208ENST00000540447 DUX3Q96PT4 197 aa7.16□□□□□ -1.26
YBX3-208ENST00000540447 MPDZO75970 2070 aa7.16□□□□□ -1.26
YBX3-208ENST00000540447 SAA2P0DJI9 122 aaPredicted RBP7.16□□□□□ -1.26
YBX3-208ENST00000540447 LY6G5BQ8NDX9 201 aa7.16□□□□□ -1.26
YBX3-208ENST00000540447 PHIPQ8WWQ0 1821 aa7.16□□□□□ -1.26
YBX3-208ENST00000540447 EFEMP2O95967 443 aa7.16□□□□□ -1.26
YBX3-208ENST00000540447 BAALC-AS2P0C853 105 aa7.16□□□□□ -1.26
YBX3-208ENST00000540447 SMIM10L1P0DMW3 83 aa7.16□□□□□ -1.26
YBX3-208ENST00000540447 C3orf22Q8N5N4 141 aa7.16□□□□□ -1.26
YBX3-208ENST00000540447 SMIM10Q96HG1 83 aa7.16□□□□□ -1.26
YBX3-208ENST00000540447 KIAA1551Q9HCM1 1747 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms