RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 BAGE2Q86Y30 109 aa4.4□□□□□ -1.71
NUP54-218ENST00000515460 PRR22Q8IZ63 422 aa4.4□□□□□ -1.71
NUP54-218ENST00000515460 C10orf111Q8N326 155 aa4.4□□□□□ -1.71
NUP54-218ENST00000515460 ZNF563Q8TA94 476 aa4.4□□□□□ -1.71
NUP54-218ENST00000515460 MRPL30Q8TCC3 161 aaKnown RBP4.4□□□□□ -1.71
NUP54-218ENST00000515460 MAL2Q969L2 176 aa4.4□□□□□ -1.71
NUP54-218ENST00000515460 UBE2E3Q969T4 207 aa4.4□□□□□ -1.71
NUP54-218ENST00000515460 SGK494Q96LW2 274 aa4.4□□□□□ -1.71
NUP54-218ENST00000515460 RAB40CQ96S21 281 aa4.4□□□□□ -1.71
NUP54-218ENST00000515460 RARRES2Q99969 163 aa4.4□□□□□ -1.71
NUP54-218ENST00000515460 MCRIP2Q9BUT9 160 aaKnown RBP4.4□□□□□ -1.71
NUP54-218ENST00000515460 NRN1Q9NPD7 142 aa4.4□□□□□ -1.71
NUP54-218ENST00000515460 CLCF1Q9UBD9 225 aa4.4□□□□□ -1.71
NUP54-218ENST00000515460 CES1P1Q9UKY3 287 aa4.4□□□□□ -1.71
NUP54-218ENST00000515460 SCN2AQ99250 2005 aa4.39□□□□□ -1.71
NUP54-218ENST00000515460 SCN3AQ9NY46 2000 aa4.39□□□□□ -1.71
NUP54-218ENST00000515460 TRGV10A0A0A0MS01 117 aa4.39□□□□□ -1.71
NUP54-218ENST00000515460 DAPL1A0PJW8 107 aa4.39□□□□□ -1.71
NUP54-218ENST00000515460 RBMY1BA6NDE4 496 aaKnown RBP4.39□□□□□ -1.71
NUP54-218ENST00000515460 RBMY1EA6NEQ0 496 aaKnown RBP4.39□□□□□ -1.71
NUP54-218ENST00000515460 ZNF850A8MQ14 1090 aa4.39□□□□□ -1.71
NUP54-218ENST00000515460 CEACAM18A8MTB9 384 aa4.39□□□□□ -1.71
NUP54-218ENST00000515460 DEFB108AA8MXU0 73 aa4.39□□□□□ -1.71
NUP54-218ENST00000515460 ZIC3O60481 467 aa4.39□□□□□ -1.71
NUP54-218ENST00000515460 DEDDO75618 318 aa4.39□□□□□ -1.71
NUP54-218ENST00000515460 SERF1AO75920 110 aa4.39□□□□□ -1.71
NUP54-218ENST00000515460 OR7C1O76099 320 aaPredicted RBP4.39□□□□□ -1.71
NUP54-218ENST00000515460 KBTBD11O94819 623 aa4.39□□□□□ -1.71
NUP54-218ENST00000515460 CA1P00915 261 aaPredicted RBP4.39□□□□□ -1.71
NUP54-218ENST00000515460 CRYAAP02489 173 aa4.39□□□□□ -1.71
NUP54-218ENST00000515460 GYPAP02724 150 aa4.39□□□□□ -1.71
NUP54-218ENST00000515460 RBMY1DP0C7P1 496 aaKnown RBP4.39□□□□□ -1.71
NUP54-218ENST00000515460 BCL2P10415 239 aa4.39□□□□□ -1.71
NUP54-218ENST00000515460 IL3RAP26951 378 aa4.39□□□□□ -1.71
NUP54-218ENST00000515460 LOXP28300 417 aaPredicted RBP4.39□□□□□ -1.71
NUP54-218ENST00000515460 CRYBA2P53672 197 aa4.39□□□□□ -1.71
NUP54-218ENST00000515460 ZNF121P58317 390 aaPredicted RBP4.39□□□□□ -1.71
NUP54-218ENST00000515460 ZNF85Q03923 595 aa4.39□□□□□ -1.71
NUP54-218ENST00000515460 FMODQ06828 376 aa4.39□□□□□ -1.71
NUP54-218ENST00000515460 CATR1Q13166 79 aa4.39□□□□□ -1.71
NUP54-218ENST00000515460 INSL4Q14641 139 aa4.39□□□□□ -1.71
NUP54-218ENST00000515460 CDK5R1Q15078 307 aa4.39□□□□□ -1.71
NUP54-218ENST00000515460 MRPL23Q16540 153 aaKnown RBP4.39□□□□□ -1.71
NUP54-218ENST00000515460 TIGITQ495A1 244 aa4.39□□□□□ -1.71
NUP54-218ENST00000515460 GLYATL3Q5SZD4 288 aa4.39□□□□□ -1.71
NUP54-218ENST00000515460 TMEM219Q86XT9 240 aa4.39□□□□□ -1.71
NUP54-218ENST00000515460 FAM219AQ8IW50 185 aa4.39□□□□□ -1.71
NUP54-218ENST00000515460 SCCPDHQ8NBX0 429 aa4.39□□□□□ -1.71
NUP54-218ENST00000515460 OR4C12Q96R67 309 aa4.39□□□□□ -1.71
NUP54-218ENST00000515460 ATP5SQ99766 215 aa4.39□□□□□ -1.71
NUP54-218ENST00000515460 SFXN3Q9BWM7 321 aa4.39□□□□□ -1.71
NUP54-218ENST00000515460 ISG20L2Q9H9L3 353 aaKnown RBP4.39□□□□□ -1.71
NUP54-218ENST00000515460 C1orf123Q9NWV4 160 aa4.39□□□□□ -1.71
NUP54-218ENST00000515460 VSIG4Q9Y279 399 aa4.39□□□□□ -1.71
NUP54-218ENST00000515460 HCFC1P51610 2035 aa4.39□□□□□ -1.71
NUP54-218ENST00000515460 HEATR5BQ9P2D3 2071 aa4.38□□□□□ -1.71
NUP54-218ENST00000515460 A0A0A0MQY5 61 aa4.38□□□□□ -1.71
NUP54-218ENST00000515460 FAM90A20PA6NIJ5 464 aa4.38□□□□□ -1.71
NUP54-218ENST00000515460 C17orf51A8MQB3 221 aa4.38□□□□□ -1.71
NUP54-218ENST00000515460 FOXI3A8MTJ6 420 aaPredicted RBP4.38□□□□□ -1.71
NUP54-218ENST00000515460 ZNF732B4DXR9 585 aa4.38□□□□□ -1.71
NUP54-218ENST00000515460 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP4.38□□□□□ -1.71
NUP54-218ENST00000515460 J3QLI3 93 aa4.38□□□□□ -1.71
NUP54-218ENST00000515460 SOCS1O15524 211 aa4.38□□□□□ -1.71
NUP54-218ENST00000515460 ZNF324O75467 553 aaPredicted RBP4.38□□□□□ -1.71
NUP54-218ENST00000515460 HSBP1O75506 76 aa4.38□□□□□ -1.71
NUP54-218ENST00000515460 OR2H2O95918 312 aa4.38□□□□□ -1.71
NUP54-218ENST00000515460 C3orf79P0CE67 100 aa4.38□□□□□ -1.71
NUP54-218ENST00000515460 ZNF708P17019 499 aa4.38□□□□□ -1.71
NUP54-218ENST00000515460 MDKP21741 143 aaPredicted RBP4.38□□□□□ -1.71
NUP54-218ENST00000515460 CRYGSP22914 178 aa4.38□□□□□ -1.71
NUP54-218ENST00000515460 GPR183P32249 361 aa4.38□□□□□ -1.71
NUP54-218ENST00000515460 G6PCP35575 357 aa4.38□□□□□ -1.71
NUP54-218ENST00000515460 GLRXP35754 106 aa4.38□□□□□ -1.71
NUP54-218ENST00000515460 EMDP50402 254 aa4.38□□□□□ -1.71
NUP54-218ENST00000515460 EMP1P54849 157 aa4.38□□□□□ -1.71
NUP54-218ENST00000515460 NDUFV3P56181 108 aaKnown RBP4.38□□□□□ -1.71
NUP54-218ENST00000515460 B3GALT5-AS1P59052 145 aa4.38□□□□□ -1.71
NUP54-218ENST00000515460 PSG4Q00888 419 aa4.38□□□□□ -1.71
NUP54-218ENST00000515460 SRYQ05066 204 aa4.38□□□□□ -1.71
NUP54-218ENST00000515460 ZNF146Q15072 292 aa4.38□□□□□ -1.71
NUP54-218ENST00000515460 GGTA1PQ4G0N0 100 aa4.38□□□□□ -1.71
NUP54-218ENST00000515460 FAM27D1Q5T7N8 215 aa4.38□□□□□ -1.71
NUP54-218ENST00000515460 Q6AWC8 147 aa4.38□□□□□ -1.71
NUP54-218ENST00000515460 STAC2Q6ZMT1 411 aa4.38□□□□□ -1.71
NUP54-218ENST00000515460 MAPK1IP1LQ8NDC0 245 aa4.38□□□□□ -1.71
NUP54-218ENST00000515460 OR13A1Q8NGR1 328 aa4.38□□□□□ -1.71
NUP54-218ENST00000515460 OR2AJ1Q8NGZ0 328 aa4.38□□□□□ -1.71
NUP54-218ENST00000515460 RNF138Q8WVD3 245 aa4.38□□□□□ -1.71
NUP54-218ENST00000515460 OR5P3Q8WZ94 311 aa4.38□□□□□ -1.71
NUP54-218ENST00000515460 TM2D1Q9BX74 207 aa4.38□□□□□ -1.71
NUP54-218ENST00000515460 PRO0628Q9UI54 55 aa4.38□□□□□ -1.71
NUP54-218ENST00000515460 LSM5Q9Y4Y9 91 aaKnown RBP4.38□□□□□ -1.71
NUP54-218ENST00000515460 CSMD3Q7Z407 3707 aa4.37□□□□□ -1.71
NUP54-218ENST00000515460 IGHV4-28A0A0C4DH34 117 aa4.37□□□□□ -1.71
NUP54-218ENST00000515460 A0A1W2PRD5 423 aa4.37□□□□□ -1.71
NUP54-218ENST00000515460 C1orf226A1L170 272 aa4.37□□□□□ -1.71
NUP54-218ENST00000515460 LRRC30A6NM36 301 aa4.37□□□□□ -1.71
NUP54-218ENST00000515460 C9JAW5 83 aa4.37□□□□□ -1.71
NUP54-218ENST00000515460 FAM90A26D6RGX4 464 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms