RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 B9D2Q9BPU9 175 aa10.68□□□□□ -0.7
NUP54-216ENST00000514901 FAM110AQ9BQ89 295 aa10.68□□□□□ -0.7
NUP54-216ENST00000514901 TUBA4BQ9H853 241 aa10.68□□□□□ -0.7
NUP54-216ENST00000514901 MBD2Q9UBB5 411 aa10.68□□□□□ -0.7
NUP54-216ENST00000514901 FBXL17Q9UF56 701 aa10.68□□□□□ -0.7
NUP54-216ENST00000514901 WDR83OSQ9Y284 106 aa10.68□□□□□ -0.7
NUP54-216ENST00000514901 OR11H12B2RN74 326 aa10.67□□□□□ -0.7
NUP54-216ENST00000514901 AGPAT2O15120 278 aa10.67□□□□□ -0.7
NUP54-216ENST00000514901 MPDU1O75352 247 aa10.67□□□□□ -0.7
NUP54-216ENST00000514901 HYPMO75409 117 aa10.67□□□□□ -0.7
NUP54-216ENST00000514901 LINC00869P0C866 280 aa10.67□□□□□ -0.7
NUP54-216ENST00000514901 IGHV4-30-4P0DP06 118 aa10.67□□□□□ -0.7
NUP54-216ENST00000514901 ORM2P19652 201 aa10.67□□□□□ -0.7
NUP54-216ENST00000514901 GATA2P23769 480 aaPredicted RBP10.67□□□□□ -0.7
NUP54-216ENST00000514901 RPL12P30050 165 aaKnown RBP10.67□□□□□ -0.7
NUP54-216ENST00000514901 CAMLGP49069 296 aa10.67□□□□□ -0.7
NUP54-216ENST00000514901 TMEM182Q6ZP80 229 aaPredicted RBP10.67□□□□□ -0.7
NUP54-216ENST00000514901 OR5C1Q8NGR4 320 aa10.67□□□□□ -0.7
NUP54-216ENST00000514901 OR1B1Q8NGR6 318 aa10.67□□□□□ -0.7
NUP54-216ENST00000514901 CHAC2Q8WUX2 184 aa10.67□□□□□ -0.7
NUP54-216ENST00000514901 MS4A6AQ9H2W1 248 aa10.67□□□□□ -0.7
NUP54-216ENST00000514901 RNF24Q9Y225 148 aa10.67□□□□□ -0.7
NUP54-216ENST00000514901 TGP01266 2768 aa10.67□□□□□ -0.7
NUP54-216ENST00000514901 IGKV3-7A0A075B6H7 116 aa10.66□□□□□ -0.7
NUP54-216ENST00000514901 SIGLEC15Q6ZMC9 328 aa10.66□□□□□ -0.7
NUP54-216ENST00000514901 GBGT1Q8N5D6 347 aa10.66□□□□□ -0.7
NUP54-216ENST00000514901 MGST2Q99735 147 aa10.66□□□□□ -0.7
NUP54-216ENST00000514901 C19orf73Q9NVV2 129 aa10.66□□□□□ -0.7
NUP54-216ENST00000514901 UBE2L5PA0A1B0GUS4 154 aa10.65□□□□□ -0.7
NUP54-216ENST00000514901 FRMD6-AS1P0C7T7 363 aa10.65□□□□□ -0.7
NUP54-216ENST00000514901 NHLRC4P0CG21 123 aaPredicted RBP10.65□□□□□ -0.7
NUP54-216ENST00000514901 TFPI2P48307 235 aa10.65□□□□□ -0.7
NUP54-216ENST00000514901 Q6ZRG5 221 aa10.65□□□□□ -0.7
NUP54-216ENST00000514901 OR8I2Q8N0Y5 310 aa10.65□□□□□ -0.7
NUP54-216ENST00000514901 GPR82Q96P67 336 aa10.65□□□□□ -0.7
NUP54-216ENST00000514901 HIGD1AQ9Y241 93 aa10.65□□□□□ -0.7
NUP54-216ENST00000514901 HSPB11Q9Y547 144 aa10.65□□□□□ -0.7
NUP54-216ENST00000514901 ELOA3CA0A087WX78 387 aaPredicted RBP10.64□□□□□ -0.71
NUP54-216ENST00000514901 ZNF98A6NK75 572 aa10.64□□□□□ -0.71
NUP54-216ENST00000514901 OR5G3P0C626 314 aa10.64□□□□□ -0.71
NUP54-216ENST00000514901 FGF7P21781 194 aa10.64□□□□□ -0.71
NUP54-216ENST00000514901 RPL29P47914 159 aaKnown RBP10.64□□□□□ -0.71
NUP54-216ENST00000514901 WFDC3Q8IUB2 231 aa10.64□□□□□ -0.71
NUP54-216ENST00000514901 DEFB125Q8N687 156 aa10.64□□□□□ -0.71
NUP54-216ENST00000514901 STPG3Q8N7X2 389 aa10.64□□□□□ -0.71
NUP54-216ENST00000514901 STXBP6Q8NFX7 210 aa10.64□□□□□ -0.71
NUP54-216ENST00000514901 ATP5SQ99766 215 aa10.64□□□□□ -0.71
NUP54-216ENST00000514901 ARL6Q9H0F7 186 aa10.64□□□□□ -0.71
NUP54-216ENST00000514901 SRD5A3Q9H8P0 318 aa10.64□□□□□ -0.71
NUP54-216ENST00000514901 SEPSECSQ9HD40 501 aaKnown RBP10.64□□□□□ -0.71
NUP54-216ENST00000514901 DNAH9Q9NYC9 4486 aa10.63□□□□□ -0.71
NUP54-216ENST00000514901 K7EQG2 157 aa10.63□□□□□ -0.71
NUP54-216ENST00000514901 GALR1P47211 349 aa10.63□□□□□ -0.71
NUP54-216ENST00000514901 CLINT1Q14677 625 aa10.63□□□□□ -0.71
NUP54-216ENST00000514901 OPCMLQ14982 345 aa10.63□□□□□ -0.71
NUP54-216ENST00000514901 SAMD13Q5VXD3 122 aa10.63□□□□□ -0.71
NUP54-216ENST00000514901 ZNF709Q8N972 641 aa10.63□□□□□ -0.71
NUP54-216ENST00000514901 SHANK2-AS3Q9BTD1 123 aa10.63□□□□□ -0.71
NUP54-216ENST00000514901 GGTLC1Q9BX51 225 aa10.63□□□□□ -0.71
NUP54-216ENST00000514901 SLC25A39Q9BZJ4 359 aaPredicted RBP10.63□□□□□ -0.71
NUP54-216ENST00000514901 DNAJC4Q9NNZ3 241 aa10.63□□□□□ -0.71
NUP54-216ENST00000514901 NRN1Q9NPD7 142 aa10.63□□□□□ -0.71
NUP54-216ENST00000514901 H3BRN7 92 aa10.62□□□□□ -0.71
NUP54-216ENST00000514901 IFNA5P01569 189 aa10.62□□□□□ -0.71
NUP54-216ENST00000514901 B2MP61769 119 aa10.62□□□□□ -0.71
NUP54-216ENST00000514901 PRR20EP86478 221 aa10.62□□□□□ -0.71
NUP54-216ENST00000514901 PRR20CP86479 221 aa10.62□□□□□ -0.71
NUP54-216ENST00000514901 PRR20DP86480 221 aa10.62□□□□□ -0.71
NUP54-216ENST00000514901 PRR20BP86481 221 aa10.62□□□□□ -0.71
NUP54-216ENST00000514901 PRR20AP86496 221 aa10.62□□□□□ -0.71
NUP54-216ENST00000514901 ODF3L2Q3SX64 289 aa10.62□□□□□ -0.71
NUP54-216ENST00000514901 INO80EQ8NBZ0 244 aaPredicted RBP10.62□□□□□ -0.71
NUP54-216ENST00000514901 OR1L4Q8NGR5 311 aa10.62□□□□□ -0.71
NUP54-216ENST00000514901 OR2T35Q8NGX2 323 aa10.62□□□□□ -0.71
NUP54-216ENST00000514901 DCANP1Q8TF63 244 aa10.62□□□□□ -0.71
NUP54-216ENST00000514901 PFDN5Q99471 154 aa10.62□□□□□ -0.71
NUP54-216ENST00000514901 NPCDR1Q9BY65 106 aa10.62□□□□□ -0.71
NUP54-216ENST00000514901 ARV1Q9H2C2 271 aa10.62□□□□□ -0.71
NUP54-216ENST00000514901 KCNIP2Q9NS61 270 aa10.62□□□□□ -0.71
NUP54-216ENST00000514901 SLC39A9Q9NUM3 307 aa10.62□□□□□ -0.71
NUP54-216ENST00000514901 DOK5Q9P104 306 aa10.62□□□□□ -0.71
NUP54-216ENST00000514901 UBQLN2Q9UHD9 624 aa10.62□□□□□ -0.71
NUP54-216ENST00000514901 COX7A2P2O60397 106 aa10.61□□□□□ -0.71
NUP54-216ENST00000514901 RPL7P18124 248 aaKnown RBP10.61□□□□□ -0.71
NUP54-216ENST00000514901 MEOX2P50222 304 aa10.61□□□□□ -0.71
NUP54-216ENST00000514901 SNRPD3P62318 126 aaKnown RBP10.61□□□□□ -0.71
NUP54-216ENST00000514901 MIC13Q5XKP0 118 aa10.61□□□□□ -0.71
NUP54-216ENST00000514901 PATE2Q6UY27 113 aa10.61□□□□□ -0.71
NUP54-216ENST00000514901 LINC00322Q6ZN03 302 aaPredicted RBP10.61□□□□□ -0.71
NUP54-216ENST00000514901 SCGB1C1Q8TD33 95 aa10.61□□□□□ -0.71
NUP54-216ENST00000514901 AQP10Q96PS8 301 aa10.61□□□□□ -0.71
NUP54-216ENST00000514901 PARD6GQ9BYG4 376 aaPredicted RBP10.61□□□□□ -0.71
NUP54-216ENST00000514901 WDR61Q9GZS3 305 aaKnown RBP10.61□□□□□ -0.71
NUP54-216ENST00000514901 WFDC10AQ9H1F0 79 aa10.61□□□□□ -0.71
NUP54-216ENST00000514901 SLC25A22Q9H936 323 aa10.61□□□□□ -0.71
NUP54-216ENST00000514901 PXMP4Q9Y6I8 212 aa10.61□□□□□ -0.71
NUP54-216ENST00000514901 RBMY1BA6NDE4 496 aaKnown RBP10.6□□□□□ -0.71
NUP54-216ENST00000514901 RBMY1EA6NEQ0 496 aaKnown RBP10.6□□□□□ -0.71
NUP54-216ENST00000514901 C17orf112F2Z3M2 114 aa10.6□□□□□ -0.71
NUP54-216ENST00000514901 RBMY1DP0C7P1 496 aaKnown RBP10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms