RNA–Protein interactions for RNA: ENST00000513761.5

CLCN3-209, Transcript of chloride voltage-gated channel 3, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CLCN3, Length 6,692 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-209ENST00000513761 KIR2DL5AQ8N109 375 aa6.34□□□□□ -1.39
CLCN3-209ENST00000513761 C8orf46Q8TAG6 207 aa6.34□□□□□ -1.39
CLCN3-209ENST00000513761 CST9LQ9H4G1 147 aa6.34□□□□□ -1.39
CLCN3-209ENST00000513761 A0A1B0GWJ7 208 aa6.34□□□□□ -1.4
CLCN3-209ENST00000513761 NPIPB5A8MRT5 1133 aa6.34□□□□□ -1.4
CLCN3-209ENST00000513761 ATP5LO75964 103 aa6.34□□□□□ -1.4
CLCN3-209ENST00000513761 PPP1R27Q86WC6 154 aa6.34□□□□□ -1.4
CLCN3-209ENST00000513761 RNF125Q96EQ8 232 aa6.34□□□□□ -1.4
CLCN3-209ENST00000513761 PYGO2Q9BRQ0 406 aa6.34□□□□□ -1.4
CLCN3-209ENST00000513761 C17orf100A8MU93 164 aa6.33□□□□□ -1.4
CLCN3-209ENST00000513761 RNASE2P10153 161 aaKnown RBP6.33□□□□□ -1.4
CLCN3-209ENST00000513761 SCGB3A1Q96QR1 104 aa6.33□□□□□ -1.4
CLCN3-209ENST00000513761 C21orf62Q9NYP8 219 aa6.33□□□□□ -1.4
CLCN3-209ENST00000513761 TICRRQ7Z2Z1 1910 aa6.33□□□□□ -1.4
CLCN3-209ENST00000513761 PCNX1Q96RV3 2341 aa6.33□□□□□ -1.4
CLCN3-209ENST00000513761 IGKV3-15P01624 115 aa6.33□□□□□ -1.4
CLCN3-209ENST00000513761 IGHV1-46P01743 117 aa6.33□□□□□ -1.4
CLCN3-209ENST00000513761 FAM74A4Q5TZK3 123 aa6.33□□□□□ -1.4
CLCN3-209ENST00000513761 FGF23Q9GZV9 251 aaPredicted RBP6.33□□□□□ -1.4
CLCN3-209ENST00000513761 ZNF106Q9H2Y7 1883 aaKnown RBP6.33□□□□□ -1.4
CLCN3-209ENST00000513761 NPPCP23582 126 aa6.33□□□□□ -1.4
CLCN3-209ENST00000513761 TMEM170BQ5T4T1 132 aa6.33□□□□□ -1.4
CLCN3-209ENST00000513761 RIF1Q5UIP0 2472 aaKnown RBP6.33□□□□□ -1.4
CLCN3-209ENST00000513761 FAM106CPP0CH98 169 aa6.33□□□□□ -1.4
CLCN3-209ENST00000513761 VDAC2P45880 294 aaPredicted RBP6.33□□□□□ -1.4
CLCN3-209ENST00000513761 OCIAD2Q56VL3 154 aa6.33□□□□□ -1.4
CLCN3-209ENST00000513761 GTSCR1Q86UQ5 136 aa6.33□□□□□ -1.4
CLCN3-209ENST00000513761 OR5A1Q8NGJ0 315 aa6.33□□□□□ -1.4
CLCN3-209ENST00000513761 LGALS3P17931 250 aaKnown RBP6.33□□□□□ -1.4
CLCN3-209ENST00000513761 KIR3DS1Q14943 382 aa6.33□□□□□ -1.4
CLCN3-209ENST00000513761 SLC25A48Q6ZT89 311 aaKnown RBP6.33□□□□□ -1.4
CLCN3-209ENST00000513761 IGKV2-40A0A087WW87 121 aaPredicted RBP6.32□□□□□ -1.4
CLCN3-209ENST00000513761 IGKV2D-40P01614 121 aaPredicted RBP6.32□□□□□ -1.4
CLCN3-209ENST00000513761 BCL6BQ8N143 479 aaPredicted RBP6.32□□□□□ -1.4
CLCN3-209ENST00000513761 LYZL1Q6UWQ5 148 aa6.32□□□□□ -1.4
CLCN3-209ENST00000513761 GTSF1LQ9H1H1 148 aa6.32□□□□□ -1.4
CLCN3-209ENST00000513761 RAXQ9Y2V3 346 aa6.32□□□□□ -1.4
CLCN3-209ENST00000513761 LYNX1G3V0Z9 82 aa6.32□□□□□ -1.4
CLCN3-209ENST00000513761 SMKR1H3BMG3 65 aa6.32□□□□□ -1.4
CLCN3-209ENST00000513761 LYNX1P0DP58 116 aa6.32□□□□□ -1.4
CLCN3-209ENST00000513761 SIGMAR1Q99720 223 aa6.32□□□□□ -1.4
CLCN3-209ENST00000513761 SLC25A39Q9BZJ4 359 aaPredicted RBP6.32□□□□□ -1.4
CLCN3-209ENST00000513761 USF3Q68DE3 2245 aa6.32□□□□□ -1.4
CLCN3-209ENST00000513761 CD5LO43866 347 aa6.32□□□□□ -1.4
CLCN3-209ENST00000513761 PCNTO95613 3336 aa6.32□□□□□ -1.4
CLCN3-209ENST00000513761 DPM2O94777 84 aa6.32□□□□□ -1.4
CLCN3-209ENST00000513761 IFI27P40305 119 aaPredicted RBP6.32□□□□□ -1.4
CLCN3-209ENST00000513761 VKORC1Q9BQB6 163 aa6.32□□□□□ -1.4
CLCN3-209ENST00000513761 PCNX3Q9H6A9 2034 aa6.32□□□□□ -1.4
CLCN3-209ENST00000513761 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.31□□□□□ -1.4
CLCN3-209ENST00000513761 PDLIM4P50479 330 aa6.31□□□□□ -1.4
CLCN3-209ENST00000513761 SPACA3Q8IXA5 215 aa6.31□□□□□ -1.4
CLCN3-209ENST00000513761 ZNF479Q96JC4 524 aa6.31□□□□□ -1.4
CLCN3-209ENST00000513761 DPM3Q9P2X0 92 aa6.31□□□□□ -1.4
CLCN3-209ENST00000513761 FAM231BA6NCW3 169 aa6.31□□□□□ -1.4
CLCN3-209ENST00000513761 H0YJW9 148 aa6.31□□□□□ -1.4
CLCN3-209ENST00000513761 CCL21O00585 134 aa6.31□□□□□ -1.4
CLCN3-209ENST00000513761 IGKCP01834 107 aa6.31□□□□□ -1.4
CLCN3-209ENST00000513761 ARMS2P0C7Q2 107 aa6.31□□□□□ -1.4
CLCN3-209ENST00000513761 LINC01560Q8TB33 94 aa6.31□□□□□ -1.4
CLCN3-209ENST00000513761 TMEM133Q9H2Q1 129 aa6.31□□□□□ -1.4
CLCN3-209ENST00000513761 FABP5P3A8MUU1 101 aa6.31□□□□□ -1.4
CLCN3-209ENST00000513761 PF4V1P10720 104 aa6.31□□□□□ -1.4
CLCN3-209ENST00000513761 TTC32Q5I0X7 151 aa6.31□□□□□ -1.4
CLCN3-209ENST00000513761 TMEM200BQ69YZ2 307 aa6.31□□□□□ -1.4
CLCN3-209ENST00000513761 FAM71F2Q6NXP2 309 aa6.31□□□□□ -1.4
CLCN3-209ENST00000513761 AMN1Q8IY45 258 aa6.31□□□□□ -1.4
CLCN3-209ENST00000513761 SPOCK3Q9BQ16 436 aa6.31□□□□□ -1.4
CLCN3-209ENST00000513761 TMEM14BQ9NUH8 114 aa6.31□□□□□ -1.4
CLCN3-209ENST00000513761 LOC105371242A0A075B767 164 aa6.31□□□□□ -1.4
CLCN3-209ENST00000513761 SP9P0CG40 484 aa6.31□□□□□ -1.4
CLCN3-209ENST00000513761 ERVK11-1P61568 191 aa6.31□□□□□ -1.4
CLCN3-209ENST00000513761 FAM168AQ92567 244 aa6.31□□□□□ -1.4
CLCN3-209ENST00000513761 COL4A4P53420 1690 aaPredicted RBP6.31□□□□□ -1.4
CLCN3-209ENST00000513761 IGKV3-20P01619 116 aa6.31□□□□□ -1.4
CLCN3-209ENST00000513761 KLF17Q5JT82 389 aaPredicted RBP6.31□□□□□ -1.4
CLCN3-209ENST00000513761 RNFT1Q5M7Z0 435 aa6.31□□□□□ -1.4
CLCN3-209ENST00000513761 OR9G4Q8NGQ1 327 aa6.31□□□□□ -1.4
CLCN3-209ENST00000513761 MED13LQ71F56 2210 aa6.31□□□□□ -1.4
CLCN3-209ENST00000513761 LMO1P25800 156 aa6.31□□□□□ -1.4
CLCN3-209ENST00000513761 Q8TAT8 98 aa6.31□□□□□ -1.4
CLCN3-209ENST00000513761 ARPC1AQ92747 370 aa6.31□□□□□ -1.4
CLCN3-209ENST00000513761 ACACAQ13085 2346 aa6.3□□□□□ -1.4
CLCN3-209ENST00000513761 ZNF134P52741 427 aa6.3□□□□□ -1.4
CLCN3-209ENST00000513761 IGHV3OR16-10A0A075B7F0 116 aa6.3□□□□□ -1.4
CLCN3-209ENST00000513761 SMIM27A0A1W2PRY6 76 aa6.3□□□□□ -1.4
CLCN3-209ENST00000513761 CCL25O15444 150 aa6.3□□□□□ -1.4
CLCN3-209ENST00000513761 DUX4L9Q6RFH8 374 aaPredicted RBP6.3□□□□□ -1.4
CLCN3-209ENST00000513761 Q6ZR03 302 aa6.3□□□□□ -1.4
CLCN3-209ENST00000513761 RPRMLQ8N4K4 120 aa6.3□□□□□ -1.4
CLCN3-209ENST00000513761 TMEM167AQ8TBQ9 72 aa6.3□□□□□ -1.4
CLCN3-209ENST00000513761 JMJD8Q96S16 334 aa6.3□□□□□ -1.4
CLCN3-209ENST00000513761 SLC25A2Q9BXI2 301 aa6.3□□□□□ -1.4
CLCN3-209ENST00000513761 COLQQ9Y215 455 aaPredicted RBP6.3□□□□□ -1.4
CLCN3-209ENST00000513761 IGHV1-24A0A0C4DH33 117 aa6.3□□□□□ -1.4
CLCN3-209ENST00000513761 WNT2P09544 360 aa6.3□□□□□ -1.4
CLCN3-209ENST00000513761 IGFL4Q6B9Z1 124 aa6.3□□□□□ -1.4
CLCN3-209ENST00000513761 CENPVQ7Z7K6 275 aaPredicted RBP6.3□□□□□ -1.4
CLCN3-209ENST00000513761 DEFB104AQ8WTQ1 72 aa6.3□□□□□ -1.4
CLCN3-209ENST00000513761 KIR2DL4Q99706 377 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms