RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-223ENST00000494123 APOHP02749 345 aaPredicted RBP11.02□□□□□ -0.64
BRCA1-223ENST00000494123 B2MP61769 119 aa11.02□□□□□ -0.64
BRCA1-223ENST00000494123 CD300CQ08708 224 aa11.02□□□□□ -0.64
BRCA1-223ENST00000494123 ZFP69Q49AA0 526 aa11.02□□□□□ -0.64
BRCA1-223ENST00000494123 PXDC1Q5TGL8 231 aa11.02□□□□□ -0.64
BRCA1-223ENST00000494123 S100A7AQ86SG5 101 aa11.02□□□□□ -0.64
BRCA1-223ENST00000494123 ST8SIA2Q92186 375 aa11.02□□□□□ -0.64
BRCA1-223ENST00000494123 HYLS1Q96M11 299 aa11.02□□□□□ -0.64
BRCA1-223ENST00000494123 PARD6GQ9BYG4 376 aaPredicted RBP11.02□□□□□ -0.64
BRCA1-223ENST00000494123 HIGD1AQ9Y241 93 aa11.02□□□□□ -0.64
BRCA1-223ENST00000494123 WIPF1O43516 503 aa11.02□□□□□ -0.65
BRCA1-223ENST00000494123 COX7A2P2O60397 106 aa11.02□□□□□ -0.65
BRCA1-223ENST00000494123 PLP1P60201 277 aa11.02□□□□□ -0.65
BRCA1-223ENST00000494123 PRR20EP86478 221 aa11.02□□□□□ -0.65
BRCA1-223ENST00000494123 PRR20CP86479 221 aa11.02□□□□□ -0.65
BRCA1-223ENST00000494123 PRR20DP86480 221 aa11.02□□□□□ -0.65
BRCA1-223ENST00000494123 PRR20BP86481 221 aa11.02□□□□□ -0.65
BRCA1-223ENST00000494123 PRR20AP86496 221 aa11.02□□□□□ -0.65
BRCA1-223ENST00000494123 DEFB114Q30KQ6 69 aa11.02□□□□□ -0.65
BRCA1-223ENST00000494123 CD300EQ496F6 205 aaPredicted RBP11.02□□□□□ -0.65
BRCA1-223ENST00000494123 LCN12Q6JVE5 192 aa11.02□□□□□ -0.65
BRCA1-223ENST00000494123 RBPMS2Q6ZRY4 209 aaKnown RBP11.02□□□□□ -0.65
BRCA1-223ENST00000494123 KCNRGQ8N5I3 272 aa11.02□□□□□ -0.65
BRCA1-223ENST00000494123 OR2K2Q8NGT1 345 aa11.02□□□□□ -0.65
BRCA1-223ENST00000494123 ARPC5LQ9BPX5 153 aa11.02□□□□□ -0.65
BRCA1-223ENST00000494123 NEURL2Q9BR09 285 aa11.02□□□□□ -0.65
BRCA1-223ENST00000494123 RSG1Q9BU20 258 aa11.02□□□□□ -0.65
BRCA1-223ENST00000494123 SLC39A9Q9NUM3 307 aa11.02□□□□□ -0.65
BRCA1-223ENST00000494123 ZMAT5Q9UDW3 170 aaKnown RBP11.02□□□□□ -0.65
BRCA1-223ENST00000494123 KANTRA0A1W2PQU2 76 aa11.01□□□□□ -0.65
BRCA1-223ENST00000494123 PFDN1O60925 122 aa11.01□□□□□ -0.65
BRCA1-223ENST00000494123 LAMTOR1Q6IAA8 161 aa11.01□□□□□ -0.65
BRCA1-223ENST00000494123 HSD17B11Q8NBQ5 300 aa11.01□□□□□ -0.65
BRCA1-223ENST00000494123 OR1L4Q8NGR5 311 aa11.01□□□□□ -0.65
BRCA1-223ENST00000494123 RNF2Q99496 336 aa11.01□□□□□ -0.65
BRCA1-223ENST00000494123 ARV1Q9H2C2 271 aa11.01□□□□□ -0.65
BRCA1-223ENST00000494123 VSIRQ9H7M9 311 aa11.01□□□□□ -0.65
BRCA1-223ENST00000494123 CXCL2P19875 107 aa11□□□□□ -0.65
BRCA1-223ENST00000494123 RPL11P62913 178 aaKnown RBP11□□□□□ -0.65
BRCA1-223ENST00000494123 C10orf113Q5VZT2 155 aa11□□□□□ -0.65
BRCA1-223ENST00000494123 RPL7L1Q6DKI1 246 aaKnown RBP11□□□□□ -0.65
BRCA1-223ENST00000494123 PFDN5Q99471 154 aa11□□□□□ -0.65
BRCA1-223ENST00000494123 U3KQE9 123 aa11□□□□□ -0.65
BRCA1-223ENST00000494123 ELOA3CA0A087WX78 387 aaPredicted RBP10.99□□□□□ -0.65
BRCA1-223ENST00000494123 BUB3O43684 328 aa10.99□□□□□ -0.65
BRCA1-223ENST00000494123 JTBO76095 146 aa10.99□□□□□ -0.65
BRCA1-223ENST00000494123 CD5P06127 495 aa10.99□□□□□ -0.65
BRCA1-223ENST00000494123 TCF24Q7RTU0 167 aa10.99□□□□□ -0.65
BRCA1-223ENST00000494123 TMEM61Q8N0U2 210 aa10.99□□□□□ -0.65
BRCA1-223ENST00000494123 UHRF2Q96PU4 802 aa10.99□□□□□ -0.65
BRCA1-223ENST00000494123 SLC25A22Q9H936 323 aa10.99□□□□□ -0.65
BRCA1-223ENST00000494123 TRAV25A0A0B4J276 109 aa10.98□□□□□ -0.65
BRCA1-223ENST00000494123 IZUMO1RA6ND01 250 aa10.98□□□□□ -0.65
BRCA1-223ENST00000494123 BCL2L11O43521 198 aa10.98□□□□□ -0.65
BRCA1-223ENST00000494123 GUCA2BQ16661 112 aa10.98□□□□□ -0.65
BRCA1-223ENST00000494123 FFAR4Q5NUL3 377 aa10.98□□□□□ -0.65
BRCA1-223ENST00000494123 C16orf54Q6UWD8 224 aa10.98□□□□□ -0.65
BRCA1-223ENST00000494123 TMUB2Q71RG4 321 aa10.98□□□□□ -0.65
BRCA1-223ENST00000494123 SLC25A39Q9BZJ4 359 aaPredicted RBP10.98□□□□□ -0.65
BRCA1-223ENST00000494123 DNAJC4Q9NNZ3 241 aa10.98□□□□□ -0.65
BRCA1-223ENST00000494123 RNF24Q9Y225 148 aa10.98□□□□□ -0.65
BRCA1-223ENST00000494123 TIMM9Q9Y5J7 89 aa10.98□□□□□ -0.65
BRCA1-223ENST00000494123 IGKV3-7A0A075B6H7 116 aa10.98□□□□□ -0.65
BRCA1-223ENST00000494123 HELTA6NFD8 242 aa10.98□□□□□ -0.65
BRCA1-223ENST00000494123 ZNF98A6NK75 572 aa10.98□□□□□ -0.65
BRCA1-223ENST00000494123 ATP6V0CP27449 155 aa10.98□□□□□ -0.65
BRCA1-223ENST00000494123 EGFEM1PQ0D2K5 195 aa10.98□□□□□ -0.65
BRCA1-223ENST00000494123 C1orf194Q5T5A4 169 aa10.98□□□□□ -0.65
BRCA1-223ENST00000494123 PATE2Q6UY27 113 aa10.98□□□□□ -0.65
BRCA1-223ENST00000494123 LINC00305Q7Z4B0 112 aa10.98□□□□□ -0.65
BRCA1-223ENST00000494123 OR8I2Q8N0Y5 310 aa10.98□□□□□ -0.65
BRCA1-223ENST00000494123 TMEM37Q8WXS4 190 aa10.98□□□□□ -0.65
BRCA1-223ENST00000494123 GNPNAT1Q96EK6 184 aaPredicted RBP10.98□□□□□ -0.65
BRCA1-223ENST00000494123 SHANK2-AS3Q9BTD1 123 aa10.98□□□□□ -0.65
BRCA1-223ENST00000494123 SCRT1Q9BWW7 348 aa10.98□□□□□ -0.65
BRCA1-223ENST00000494123 ZNF471Q9BX82 626 aaPredicted RBP10.98□□□□□ -0.65
BRCA1-223ENST00000494123 ZNF256Q9Y2P7 627 aaPredicted RBP10.98□□□□□ -0.65
BRCA1-223ENST00000494123 H3BRN7 92 aa10.97□□□□□ -0.65
BRCA1-223ENST00000494123 GP9P14770 177 aa10.97□□□□□ -0.65
BRCA1-223ENST00000494123 BEAN1Q3B7T3 259 aa10.97□□□□□ -0.65
BRCA1-223ENST00000494123 LGALSLQ3ZCW2 172 aaPredicted RBP10.97□□□□□ -0.65
BRCA1-223ENST00000494123 SIGLEC15Q6ZMC9 328 aa10.97□□□□□ -0.65
BRCA1-223ENST00000494123 GATAD1Q8WUU5 269 aa10.97□□□□□ -0.65
BRCA1-223ENST00000494123 GLMPQ8WWB7 406 aa10.97□□□□□ -0.65
BRCA1-223ENST00000494123 PSMG3Q9BT73 122 aaPredicted RBP10.97□□□□□ -0.65
BRCA1-223ENST00000494123 CYTL1Q9NRR1 136 aa10.97□□□□□ -0.65
BRCA1-223ENST00000494123 CMYA5Q8N3K9 4069 aa10.97□□□□□ -0.65
BRCA1-223ENST00000494123 TSPAN4O14817 238 aa10.96□□□□□ -0.65
BRCA1-223ENST00000494123 KRTAP10-11P60412 298 aa10.96□□□□□ -0.65
BRCA1-223ENST00000494123 PAFAH1B2P68402 229 aa10.96□□□□□ -0.65
BRCA1-223ENST00000494123 GCSAMLQ5JQS6 135 aa10.96□□□□□ -0.65
BRCA1-223ENST00000494123 LEMD1Q68G75 181 aa10.96□□□□□ -0.65
BRCA1-223ENST00000494123 RFNGQ9Y644 331 aa10.96□□□□□ -0.65
BRCA1-223ENST00000494123 NOTCH1P46531 2555 aa10.96□□□□□ -0.66
BRCA1-223ENST00000494123 DNASE2O00115 360 aaPredicted RBP10.95□□□□□ -0.66
BRCA1-223ENST00000494123 C4BPBP20851 252 aa10.95□□□□□ -0.66
BRCA1-223ENST00000494123 GALR1P47211 349 aa10.95□□□□□ -0.66
BRCA1-223ENST00000494123 TFPI2P48307 235 aa10.95□□□□□ -0.66
BRCA1-223ENST00000494123 EIF5AP63241 154 aaKnown RBP10.95□□□□□ -0.66
BRCA1-223ENST00000494123 KPRPQ5T749 579 aaPredicted RBP10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms