RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 IGLL1P15814 213 aa13.06□□□□□ -0.32
LIME1-208ENST00000493265 CBLN1P23435 193 aa13.06□□□□□ -0.32
LIME1-208ENST00000493265 ATP6V0CP27449 155 aa13.06□□□□□ -0.32
LIME1-208ENST00000493265 FFAR4Q5NUL3 377 aa13.06□□□□□ -0.32
LIME1-208ENST00000493265 LAMTOR1Q6IAA8 161 aa13.06□□□□□ -0.32
LIME1-208ENST00000493265 IL34Q6ZMJ4 242 aa13.06□□□□□ -0.32
LIME1-208ENST00000493265 Q6ZRG5 221 aa13.06□□□□□ -0.32
LIME1-208ENST00000493265 SH3BGRL3Q9H299 93 aa13.06□□□□□ -0.32
LIME1-208ENST00000493265 IGHV7-4-1A0A0J9YVY3 117 aa13.05□□□□□ -0.32
LIME1-208ENST00000493265 HNRNPCP07910 306 aaKnown RBP eCLIP13.05□□□□□ -0.32
LIME1-208ENST00000493265 PRR20EP86478 221 aa13.05□□□□□ -0.32
LIME1-208ENST00000493265 PRR20CP86479 221 aa13.05□□□□□ -0.32
LIME1-208ENST00000493265 PRR20DP86480 221 aa13.05□□□□□ -0.32
LIME1-208ENST00000493265 PRR20BP86481 221 aa13.05□□□□□ -0.32
LIME1-208ENST00000493265 PRR20AP86496 221 aa13.05□□□□□ -0.32
LIME1-208ENST00000493265 ADAMTSL5Q6ZMM2 481 aa13.05□□□□□ -0.32
LIME1-208ENST00000493265 DYNLRB2Q8TF09 96 aa13.05□□□□□ -0.32
LIME1-208ENST00000493265 NARS2Q96I59 477 aaKnown RBP13.05□□□□□ -0.32
LIME1-208ENST00000493265 KCNIP2Q9NS61 270 aa13.05□□□□□ -0.32
LIME1-208ENST00000493265 SMPXQ9UHP9 88 aa13.05□□□□□ -0.32
LIME1-208ENST00000493265 HIGD1AQ9Y241 93 aa13.05□□□□□ -0.32
LIME1-208ENST00000493265 BOLA1Q9Y3E2 137 aa13.05□□□□□ -0.32
LIME1-208ENST00000493265 GCSAMLQ5JQS6 135 aa13.04□□□□□ -0.32
LIME1-208ENST00000493265 PATE2Q6UY27 113 aa13.04□□□□□ -0.32
LIME1-208ENST00000493265 WFDC9Q8NEX5 89 aa13.04□□□□□ -0.32
LIME1-208ENST00000493265 ST8SIA2Q92186 375 aa13.04□□□□□ -0.32
LIME1-208ENST00000493265 UHRF2Q96PU4 802 aa13.04□□□□□ -0.32
LIME1-208ENST00000493265 RHPN1-AS1Q9BWJ2 59 aa13.04□□□□□ -0.32
LIME1-208ENST00000493265 MRPL27Q9P0M9 148 aaKnown RBP13.04□□□□□ -0.32
LIME1-208ENST00000493265 CRYBB3P26998 211 aa13.03□□□□□ -0.32
LIME1-208ENST00000493265 C10orf113Q5VZT2 155 aa13.03□□□□□ -0.32
LIME1-208ENST00000493265 LEMD1Q68G75 181 aa13.03□□□□□ -0.32
LIME1-208ENST00000493265 MARC2Q969Z3 335 aa13.03□□□□□ -0.32
LIME1-208ENST00000493265 MCRIP2Q9BUT9 160 aaKnown RBP13.03□□□□□ -0.32
LIME1-208ENST00000493265 ARV1Q9H2C2 271 aa13.03□□□□□ -0.32
LIME1-208ENST00000493265 SLC25A32Q9H2D1 315 aa13.03□□□□□ -0.32
LIME1-208ENST00000493265 SLC25A22Q9H936 323 aa13.03□□□□□ -0.32
LIME1-208ENST00000493265 MLXQ9UH92 298 aa13.03□□□□□ -0.32
LIME1-208ENST00000493265 CHEK1O14757 476 aa13.02□□□□□ -0.33
LIME1-208ENST00000493265 C4BPBP20851 252 aa13.02□□□□□ -0.33
LIME1-208ENST00000493265 PLP1P60201 277 aa13.02□□□□□ -0.33
LIME1-208ENST00000493265 C9orf66Q5T8R8 295 aa13.02□□□□□ -0.33
LIME1-208ENST00000493265 PXDC1Q5TGL8 231 aa13.02□□□□□ -0.33
LIME1-208ENST00000493265 OR1L4Q8NGR5 311 aa13.02□□□□□ -0.33
LIME1-208ENST00000493265 OR2G3Q8NGZ4 309 aa13.02□□□□□ -0.33
LIME1-208ENST00000493265 TMEM37Q8WXS4 190 aa13.02□□□□□ -0.33
LIME1-208ENST00000493265 GNPNAT1Q96EK6 184 aaPredicted RBP13.02□□□□□ -0.33
LIME1-208ENST00000493265 SCRT1Q9BWW7 348 aa13.02□□□□□ -0.33
LIME1-208ENST00000493265 DNAJC4Q9NNZ3 241 aa13.02□□□□□ -0.33
LIME1-208ENST00000493265 TIMM9Q9Y5J7 89 aa13.02□□□□□ -0.33
LIME1-208ENST00000493265 IGKV3-7A0A075B6H7 116 aa13.01□□□□□ -0.33
LIME1-208ENST00000493265 C8orf88P0DMB2 117 aa13.01□□□□□ -0.33
LIME1-208ENST00000493265 OXLD1Q5BKU9 147 aa13.01□□□□□ -0.33
LIME1-208ENST00000493265 LINC00305Q7Z4B0 112 aa13.01□□□□□ -0.33
LIME1-208ENST00000493265 GRAMD2BQ96HH9 432 aa13.01□□□□□ -0.33
LIME1-208ENST00000493265 RNF2Q99496 336 aa13.01□□□□□ -0.33
LIME1-208ENST00000493265 PSMG3Q9BT73 122 aaPredicted RBP13.01□□□□□ -0.33
LIME1-208ENST00000493265 SLC25A39Q9BZJ4 359 aaPredicted RBP13.01□□□□□ -0.33
LIME1-208ENST00000493265 VSIRQ9H7M9 311 aa13.01□□□□□ -0.33
LIME1-208ENST00000493265 PFDN2Q9UHV9 154 aa13.01□□□□□ -0.33
LIME1-208ENST00000493265 ELOA3CA0A087WX78 387 aaPredicted RBP13□□□□□ -0.33
LIME1-208ENST00000493265 A0A1W2PS18 150 aa13□□□□□ -0.33
LIME1-208ENST00000493265 G3V4G9 280 aa13□□□□□ -0.33
LIME1-208ENST00000493265 TPT1P13693 172 aaKnown RBP13□□□□□ -0.33
LIME1-208ENST00000493265 BMI1P35226 326 aa13□□□□□ -0.33
LIME1-208ENST00000493265 RAB2AP61019 212 aa13□□□□□ -0.33
LIME1-208ENST00000493265 RPL11P62913 178 aaKnown RBP13□□□□□ -0.33
LIME1-208ENST00000493265 EIF5AP63241 154 aaKnown RBP13□□□□□ -0.33
LIME1-208ENST00000493265 ACOT6Q3I5F7 207 aaPredicted RBP13□□□□□ -0.33
LIME1-208ENST00000493265 PFDN5Q99471 154 aa13□□□□□ -0.33
LIME1-208ENST00000493265 TMEM231Q9H6L2 316 aa13□□□□□ -0.33
LIME1-208ENST00000493265 TRAV5A0A0B4J249 113 aa12.99□□□□□ -0.33
LIME1-208ENST00000493265 ZNF98A6NK75 572 aa12.99□□□□□ -0.33
LIME1-208ENST00000493265 EIF3GO75821 320 aaKnown RBP eCLIP12.99□□□□□ -0.33
LIME1-208ENST00000493265 PRB2P02812 416 aaPredicted RBP12.99□□□□□ -0.33
LIME1-208ENST00000493265 DEFB114Q30KQ6 69 aa12.99□□□□□ -0.33
LIME1-208ENST00000493265 CD300EQ496F6 205 aaPredicted RBP12.99□□□□□ -0.33
LIME1-208ENST00000493265 FAM78BQ5VT40 261 aa12.99□□□□□ -0.33
LIME1-208ENST00000493265 MORN5Q5VZ52 161 aa12.99□□□□□ -0.33
LIME1-208ENST00000493265 SPATA31B1PQ5VZV4 182 aa12.99□□□□□ -0.33
LIME1-208ENST00000493265 FAM122CQ6P4D5 195 aa12.99□□□□□ -0.33
LIME1-208ENST00000493265 TCF24Q7RTU0 167 aa12.99□□□□□ -0.33
LIME1-208ENST00000493265 SLC51BQ86UW2 128 aa12.99□□□□□ -0.33
LIME1-208ENST00000493265 BAP18Q8IXM2 172 aa12.99□□□□□ -0.33
LIME1-208ENST00000493265 SHANK2-AS3Q9BTD1 123 aa12.99□□□□□ -0.33
LIME1-208ENST00000493265 U3KQE9 123 aa12.99□□□□□ -0.33
LIME1-208ENST00000493265 H3BRN7 92 aa12.98□□□□□ -0.33
LIME1-208ENST00000493265 BUB3O43684 328 aa12.98□□□□□ -0.33
LIME1-208ENST00000493265 SPP1P10451 314 aa12.98□□□□□ -0.33
LIME1-208ENST00000493265 S100A7P31151 101 aa12.98□□□□□ -0.33
LIME1-208ENST00000493265 C16orf54Q6UWD8 224 aa12.98□□□□□ -0.33
LIME1-208ENST00000493265 S100A7AQ86SG5 101 aa12.98□□□□□ -0.33
LIME1-208ENST00000493265 OR8I2Q8N0Y5 310 aa12.98□□□□□ -0.33
LIME1-208ENST00000493265 OR10G4Q8NGN3 311 aa12.98□□□□□ -0.33
LIME1-208ENST00000493265 OR10G9Q8NGN4 311 aa12.98□□□□□ -0.33
LIME1-208ENST00000493265 OR10G7Q8NGN6 311 aa12.98□□□□□ -0.33
LIME1-208ENST00000493265 GATAD1Q8WUU5 269 aa12.98□□□□□ -0.33
LIME1-208ENST00000493265 TMED6Q8WW62 240 aa12.98□□□□□ -0.33
LIME1-208ENST00000493265 SIGLEC8Q9NYZ4 499 aa12.98□□□□□ -0.33
LIME1-208ENST00000493265 TECRQ9NZ01 308 aaKnown RBP12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms