RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 ESPL1Q14674 2120 aa10.76□□□□□ -0.69
COL6A3-212ENST00000491769 IGHV3-16A0A0C4DH30 117 aa10.76□□□□□ -0.69
COL6A3-212ENST00000491769 GAFA1Q96PS6 74 aa10.76□□□□□ -0.69
COL6A3-212ENST00000491769 SPTA1P02549 2419 aa10.76□□□□□ -0.69
COL6A3-212ENST00000491769 KNCNA6PVL3 124 aa10.76□□□□□ -0.69
COL6A3-212ENST00000491769 F8VVB4 439 aa10.76□□□□□ -0.69
COL6A3-212ENST00000491769 F8VWA3 439 aa10.76□□□□□ -0.69
COL6A3-212ENST00000491769 SRP19P09132 144 aaKnown RBP10.76□□□□□ -0.69
COL6A3-212ENST00000491769 ADMP35318 185 aa10.76□□□□□ -0.69
COL6A3-212ENST00000491769 MTURNQ8N3F0 131 aa10.75□□□□□ -0.69
COL6A3-212ENST00000491769 ZNF114Q8NC26 417 aa10.75□□□□□ -0.69
COL6A3-212ENST00000491769 ERG28Q9UKR5 140 aa10.75□□□□□ -0.69
COL6A3-212ENST00000491769 TMEM238C9JI98 176 aa10.75□□□□□ -0.69
COL6A3-212ENST00000491769 C14orf178Q8N769 122 aaPredicted RBP10.75□□□□□ -0.69
COL6A3-212ENST00000491769 E7EQL1 145 aa10.75□□□□□ -0.69
COL6A3-212ENST00000491769 PRDM13Q9H4Q3 707 aa10.75□□□□□ -0.69
COL6A3-212ENST00000491769 INTS1Q8N201 2190 aaKnown RBP10.75□□□□□ -0.69
COL6A3-212ENST00000491769 C22orf46C9J442 243 aa10.75□□□□□ -0.69
COL6A3-212ENST00000491769 RMI2Q96E14 147 aa10.75□□□□□ -0.69
COL6A3-212ENST00000491769 IGLV3-32A0A0A0MS00 114 aa10.75□□□□□ -0.69
COL6A3-212ENST00000491769 ITGB1BP1O14713 200 aa10.75□□□□□ -0.69
COL6A3-212ENST00000491769 CSTL1Q9H114 145 aa10.75□□□□□ -0.69
COL6A3-212ENST00000491769 TRIOBPQ9H2D6 2365 aa10.75□□□□□ -0.69
COL6A3-212ENST00000491769 A0A1W2PRE2 83 aa10.74□□□□□ -0.69
COL6A3-212ENST00000491769 LEPROTO15243 131 aa10.74□□□□□ -0.69
COL6A3-212ENST00000491769 PAX9P55771 341 aa10.74□□□□□ -0.69
COL6A3-212ENST00000491769 SRSF4Q08170 494 aaKnown RBP10.74□□□□□ -0.69
COL6A3-212ENST00000491769 Q6ZS92 163 aa10.74□□□□□ -0.69
COL6A3-212ENST00000491769 IFITM3Q01628 133 aa10.74□□□□□ -0.69
COL6A3-212ENST00000491769 STRCP1A6NGW2 1772 aa10.74□□□□□ -0.69
COL6A3-212ENST00000491769 ORAOV1Q8WV07 137 aa10.74□□□□□ -0.69
COL6A3-212ENST00000491769 RNF5Q99942 180 aa10.74□□□□□ -0.69
COL6A3-212ENST00000491769 A0A096LPF7 62 aa10.74□□□□□ -0.69
COL6A3-212ENST00000491769 H0YJW9 148 aa10.74□□□□□ -0.69
COL6A3-212ENST00000491769 LGALS1P09382 135 aaKnown RBP10.74□□□□□ -0.69
COL6A3-212ENST00000491769 RPL23P62829 140 aaKnown RBP10.74□□□□□ -0.69
COL6A3-212ENST00000491769 SEC11AP67812 179 aa10.74□□□□□ -0.69
COL6A3-212ENST00000491769 MST1LQ2TV78 715 aa10.73□□□□□ -0.69
COL6A3-212ENST00000491769 RASL11AQ6T310 242 aa10.73□□□□□ -0.69
COL6A3-212ENST00000491769 LINC00114Q6XXX2 140 aa10.73□□□□□ -0.69
COL6A3-212ENST00000491769 SNHG12Q9BXW3 62 aa10.73□□□□□ -0.69
COL6A3-212ENST00000491769 TRAV9-1A0A075B6T8 112 aa10.73□□□□□ -0.69
COL6A3-212ENST00000491769 GAGE12BA1L429 117 aa10.73□□□□□ -0.69
COL6A3-212ENST00000491769 GAGE7O76087 117 aa10.73□□□□□ -0.69
COL6A3-212ENST00000491769 GAGE12FP0CL80 117 aa10.73□□□□□ -0.69
COL6A3-212ENST00000491769 GAGE12GP0CL81 117 aa10.73□□□□□ -0.69
COL6A3-212ENST00000491769 GAGE12IP0CL82 117 aa10.73□□□□□ -0.69
COL6A3-212ENST00000491769 A0A1B0GV90 55 aa10.73□□□□□ -0.69
COL6A3-212ENST00000491769 VCYO14598 125 aa10.73□□□□□ -0.69
COL6A3-212ENST00000491769 SH2D1AO60880 128 aa10.73□□□□□ -0.69
COL6A3-212ENST00000491769 ZNF562Q6V9R5 426 aa10.73□□□□□ -0.69
COL6A3-212ENST00000491769 ZNF98A6NK75 572 aa10.73□□□□□ -0.69
COL6A3-212ENST00000491769 FAM90A9PA6NNJ1 464 aa10.73□□□□□ -0.69
COL6A3-212ENST00000491769 SERF1AO75920 110 aa10.73□□□□□ -0.69
COL6A3-212ENST00000491769 DKK1O94907 266 aa10.73□□□□□ -0.69
COL6A3-212ENST00000491769 LYZL1Q6UWQ5 148 aa10.73□□□□□ -0.69
COL6A3-212ENST00000491769 PLEKHB2Q96CS7 222 aa10.73□□□□□ -0.69
COL6A3-212ENST00000491769 KLF12Q9Y4X4 402 aa10.73□□□□□ -0.69
COL6A3-212ENST00000491769 IGKV1-9A0A0C4DH69 117 aa10.73□□□□□ -0.69
COL6A3-212ENST00000491769 THAP8Q8NA92 274 aa10.73□□□□□ -0.69
COL6A3-212ENST00000491769 MDS2Q8NDY4 140 aa10.73□□□□□ -0.69
COL6A3-212ENST00000491769 IFI27L1Q96BM0 104 aa10.73□□□□□ -0.69
COL6A3-212ENST00000491769 THADAQ6YHU6 1953 aa10.72□□□□□ -0.69
COL6A3-212ENST00000491769 C5orf30Q96GV9 206 aa10.72□□□□□ -0.69
COL6A3-212ENST00000491769 FNDC4Q9H6D8 234 aaPredicted RBP10.72□□□□□ -0.69
COL6A3-212ENST00000491769 D6R8Y8 96 aa10.72□□□□□ -0.69
COL6A3-212ENST00000491769 CRYGSP22914 178 aa10.72□□□□□ -0.69
COL6A3-212ENST00000491769 PRIMA1Q86XR5 153 aa10.72□□□□□ -0.69
COL6A3-212ENST00000491769 ARHGEF17Q96PE2 2063 aaPredicted RBP10.72□□□□□ -0.69
COL6A3-212ENST00000491769 IGFBP3P17936 291 aaPredicted RBP10.72□□□□□ -0.69
COL6A3-212ENST00000491769 SPATA31B1PQ5VZV4 182 aa10.72□□□□□ -0.69
COL6A3-212ENST00000491769 IGHV1-69DA0A0B4J2H0 117 aa10.72□□□□□ -0.69
COL6A3-212ENST00000491769 IGHV1-69P01742 117 aa10.72□□□□□ -0.69
COL6A3-212ENST00000491769 NIT1Q86X76 327 aa10.72□□□□□ -0.69
COL6A3-212ENST00000491769 C1QL4Q86Z23 238 aa10.72□□□□□ -0.69
COL6A3-212ENST00000491769 TAF1LQ8IZX4 1826 aa10.71□□□□□ -0.69
COL6A3-212ENST00000491769 AZU1P20160 251 aa10.71□□□□□ -0.69
COL6A3-212ENST00000491769 TMEM155Q4W5P6 130 aa10.71□□□□□ -0.69
COL6A3-212ENST00000491769 DERL1Q9BUN8 251 aa10.71□□□□□ -0.69
COL6A3-212ENST00000491769 DKK4Q9UBT3 224 aa10.71□□□□□ -0.69
COL6A3-212ENST00000491769 KLK9Q9UKQ9 250 aa10.71□□□□□ -0.69
COL6A3-212ENST00000491769 TRAV3A0A0B4J244 114 aa10.71□□□□□ -0.69
COL6A3-212ENST00000491769 SPINK13Q1W4C9 94 aa10.71□□□□□ -0.69
COL6A3-212ENST00000491769 OSTCQ9NRP0 149 aa10.71□□□□□ -0.69
COL6A3-212ENST00000491769 ZNF319Q9P2F9 582 aa10.71□□□□□ -0.69
COL6A3-212ENST00000491769 SIGLEC9Q9Y336 463 aa10.71□□□□□ -0.69
COL6A3-212ENST00000491769 TSKUQ8WUA8 353 aa10.71□□□□□ -0.7
COL6A3-212ENST00000491769 SPXQ9BT56 116 aa10.71□□□□□ -0.7
COL6A3-212ENST00000491769 RALGAPA1Q6GYQ0 2036 aa10.71□□□□□ -0.7
COL6A3-212ENST00000491769 VWC2Q2TAL6 325 aa10.71□□□□□ -0.7
COL6A3-212ENST00000491769 OCC1Q8TAD7 63 aa10.7□□□□□ -0.7
COL6A3-212ENST00000491769 TRBV25-1A0A075B6N4 114 aa10.7□□□□□ -0.7
COL6A3-212ENST00000491769 A8MXK9 166 aa10.7□□□□□ -0.7
COL6A3-212ENST00000491769 TRGV9Q99603 122 aa10.7□□□□□ -0.7
COL6A3-212ENST00000491769 COL24A1Q17RW2 1714 aa10.7□□□□□ -0.7
COL6A3-212ENST00000491769 LINC01549A6NIU2 74 aa10.7□□□□□ -0.7
COL6A3-212ENST00000491769 ATP6V0E1O15342 81 aa10.7□□□□□ -0.7
COL6A3-212ENST00000491769 FAM90A2PQ658T7 463 aa10.7□□□□□ -0.7
COL6A3-212ENST00000491769 UBE2BP63146 152 aa10.7□□□□□ -0.7
COL6A3-212ENST00000491769 RBMY1FQ15415 496 aaKnown RBP10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 639.2 ms