RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 ZNF705FA8MVS1 300 aaPredicted RBP9.79□□□□□ -0.84
COL6A3-211ENST00000491233 SNRPGP15A8MWD9 76 aa9.79□□□□□ -0.84
COL6A3-211ENST00000491233 MED6O75586 246 aa9.79□□□□□ -0.84
COL6A3-211ENST00000491233 ZNF705DP0CH99 300 aaPredicted RBP9.79□□□□□ -0.84
COL6A3-211ENST00000491233 ZNF705BP0CI00 300 aaPredicted RBP9.79□□□□□ -0.84
COL6A3-211ENST00000491233 SLC25A6P12236 298 aa9.79□□□□□ -0.84
COL6A3-211ENST00000491233 PPP1R1AQ13522 171 aa9.79□□□□□ -0.84
COL6A3-211ENST00000491233 OR8I2Q8N0Y5 310 aa9.79□□□□□ -0.84
COL6A3-211ENST00000491233 THAP8Q8NA92 274 aa9.79□□□□□ -0.84
COL6A3-211ENST00000491233 NEU1Q99519 415 aa9.79□□□□□ -0.84
COL6A3-211ENST00000491233 SCRT1Q9BWW7 348 aa9.79□□□□□ -0.84
COL6A3-211ENST00000491233 MAGT1Q9H0U3 335 aa9.79□□□□□ -0.84
COL6A3-211ENST00000491233 WRBO00258 174 aa9.78□□□□□ -0.84
COL6A3-211ENST00000491233 SFT2D2O95562 160 aa9.78□□□□□ -0.84
COL6A3-211ENST00000491233 EMP1P54849 157 aa9.78□□□□□ -0.84
COL6A3-211ENST00000491233 ZNF709Q8N972 641 aa9.78□□□□□ -0.84
COL6A3-211ENST00000491233 OR4B1Q8NGF8 309 aa9.78□□□□□ -0.84
COL6A3-211ENST00000491233 CIB3Q96Q77 187 aaPredicted RBP9.78□□□□□ -0.84
COL6A3-211ENST00000491233 SLC25A21Q9BQT8 299 aaPredicted RBP9.78□□□□□ -0.84
COL6A3-211ENST00000491233 SLC35B3Q9H1N7 401 aa9.78□□□□□ -0.84
COL6A3-211ENST00000491233 TMED3Q9Y3Q3 217 aa9.78□□□□□ -0.84
COL6A3-211ENST00000491233 PRSS46E5RG02 174 aa9.77□□□□□ -0.85
COL6A3-211ENST00000491233 F6UB75 175 aa9.77□□□□□ -0.85
COL6A3-211ENST00000491233 H3BP45 60 aa9.77□□□□□ -0.85
COL6A3-211ENST00000491233 ISLRO14498 428 aa9.77□□□□□ -0.85
COL6A3-211ENST00000491233 SYNGR2O43760 224 aa9.77□□□□□ -0.85
COL6A3-211ENST00000491233 HOXB5P09067 269 aa9.77□□□□□ -0.85
COL6A3-211ENST00000491233 S100A5P33763 92 aa9.77□□□□□ -0.85
COL6A3-211ENST00000491233 PAX9P55771 341 aa9.77□□□□□ -0.85
COL6A3-211ENST00000491233 CLUHP3Q96NS8 147 aa9.77□□□□□ -0.85
COL6A3-211ENST00000491233 SLC25A32Q9H2D1 315 aa9.77□□□□□ -0.85
COL6A3-211ENST00000491233 SLC25A22Q9H936 323 aa9.77□□□□□ -0.85
COL6A3-211ENST00000491233 HERC2O95714 4834 aa9.76□□□□□ -0.85
COL6A3-211ENST00000491233 TMEM189A5PLL7 270 aa9.76□□□□□ -0.85
COL6A3-211ENST00000491233 CCDC160A6NGH7 325 aa9.76□□□□□ -0.85
COL6A3-211ENST00000491233 SMIM9A6NGZ8 99 aa9.76□□□□□ -0.85
COL6A3-211ENST00000491233 CFDP00746 253 aaPredicted RBP9.76□□□□□ -0.85
COL6A3-211ENST00000491233 SPART-AS1P0CW21 52 aa9.76□□□□□ -0.85
COL6A3-211ENST00000491233 GALR1P47211 349 aa9.76□□□□□ -0.85
COL6A3-211ENST00000491233 MEOX2P50222 304 aa9.76□□□□□ -0.85
COL6A3-211ENST00000491233 RPP30P78346 268 aaKnown RBP9.76□□□□□ -0.85
COL6A3-211ENST00000491233 AKR1C1Q04828 323 aa9.76□□□□□ -0.85
COL6A3-211ENST00000491233 SPANXN5Q5MJ07 72 aa9.76□□□□□ -0.85
COL6A3-211ENST00000491233 SAMD13Q5VXD3 122 aa9.76□□□□□ -0.85
COL6A3-211ENST00000491233 SPATA31B1PQ5VZV4 182 aa9.76□□□□□ -0.85
COL6A3-211ENST00000491233 GGNBP1Q5YKI7 109 aa9.76□□□□□ -0.85
COL6A3-211ENST00000491233 EBLN2Q6P2I7 272 aa9.76□□□□□ -0.85
COL6A3-211ENST00000491233 ACOT7LQ6ZUV0 252 aa9.76□□□□□ -0.85
COL6A3-211ENST00000491233 DEDD2Q8WXF8 326 aa9.76□□□□□ -0.85
COL6A3-211ENST00000491233 C16orf92Q96LL3 132 aa9.76□□□□□ -0.85
COL6A3-211ENST00000491233 C20orf173Q96LM9 149 aa9.76□□□□□ -0.85
COL6A3-211ENST00000491233 NDUFAF3Q9BU61 184 aa9.76□□□□□ -0.85
COL6A3-211ENST00000491233 RFNGQ9Y644 331 aa9.76□□□□□ -0.85
COL6A3-211ENST00000491233 HECTD4Q9Y4D8 3996 aa9.75□□□□□ -0.85
COL6A3-211ENST00000491233 A0A0J9YX75 114 aa9.75□□□□□ -0.85
COL6A3-211ENST00000491233 ZNF98A6NK75 572 aa9.75□□□□□ -0.85
COL6A3-211ENST00000491233 P0DMU3 169 aa9.75□□□□□ -0.85
COL6A3-211ENST00000491233 FAM231AP0DMU4 169 aa9.75□□□□□ -0.85
COL6A3-211ENST00000491233 FAM231CP0DMU5 169 aa9.75□□□□□ -0.85
COL6A3-211ENST00000491233 GATA2P23769 480 aaPredicted RBP9.75□□□□□ -0.85
COL6A3-211ENST00000491233 PSG9Q00887 426 aa9.75□□□□□ -0.85
COL6A3-211ENST00000491233 FAM78BQ5VT40 261 aa9.75□□□□□ -0.85
COL6A3-211ENST00000491233 CCDC190Q86UF4 302 aa9.75□□□□□ -0.85
COL6A3-211ENST00000491233 BPIFCQ8NFQ6 507 aa9.75□□□□□ -0.85
COL6A3-211ENST00000491233 RPRMQ9NS64 109 aa9.75□□□□□ -0.85
COL6A3-211ENST00000491233 SLC45A2Q9UMX9 530 aa9.75□□□□□ -0.85
COL6A3-211ENST00000491233 GOLT1BQ9Y3E0 138 aa9.75□□□□□ -0.85
COL6A3-211ENST00000491233 ORM2P19652 201 aa9.74□□□□□ -0.85
COL6A3-211ENST00000491233 FAM222AQ5U5X8 452 aa9.74□□□□□ -0.85
COL6A3-211ENST00000491233 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.74□□□□□ -0.85
COL6A3-211ENST00000491233 TMEM182Q6ZP80 229 aaPredicted RBP9.74□□□□□ -0.85
COL6A3-211ENST00000491233 C1orf158Q8N1D5 194 aa9.74□□□□□ -0.85
COL6A3-211ENST00000491233 POM121L12Q8N7R1 296 aa9.74□□□□□ -0.85
COL6A3-211ENST00000491233 OR1B1Q8NGR6 318 aa9.74□□□□□ -0.85
COL6A3-211ENST00000491233 C17orf77Q96MU5 243 aa9.74□□□□□ -0.85
COL6A3-211ENST00000491233 C7orf50Q9BRJ6 194 aaKnown RBP9.74□□□□□ -0.85
COL6A3-211ENST00000491233 RSG1Q9BU20 258 aa9.74□□□□□ -0.85
COL6A3-211ENST00000491233 TMEM147Q9BVK8 224 aa9.74□□□□□ -0.85
COL6A3-211ENST00000491233 DOK5Q9P104 306 aa9.74□□□□□ -0.85
COL6A3-211ENST00000491233 DKK2Q9UBU2 259 aa9.74□□□□□ -0.85
COL6A3-211ENST00000491233 STRAPQ9Y3F4 350 aaKnown RBP9.74□□□□□ -0.85
COL6A3-211ENST00000491233 TEX48A0A1B0GUV7 120 aa9.73□□□□□ -0.85
COL6A3-211ENST00000491233 SMCO3A2RU48 225 aa9.73□□□□□ -0.85
COL6A3-211ENST00000491233 ADAP1O75689 374 aa9.73□□□□□ -0.85
COL6A3-211ENST00000491233 HBE1P02100 147 aa9.73□□□□□ -0.85
COL6A3-211ENST00000491233 UBE2MP61081 183 aaKnown RBP9.73□□□□□ -0.85
COL6A3-211ENST00000491233 NIPSNAP3BQ9BS92 247 aa9.73□□□□□ -0.85
COL6A3-211ENST00000491233 SRRQ9GZT4 340 aa9.73□□□□□ -0.85
COL6A3-211ENST00000491233 LOC102723971A0A1B0GUV8 181 aa9.72□□□□□ -0.85
COL6A3-211ENST00000491233 C9orf170A2RU37 121 aa9.72□□□□□ -0.85
COL6A3-211ENST00000491233 A8MTW9 85 aa9.72□□□□□ -0.85
COL6A3-211ENST00000491233 H3BRN7 92 aa9.72□□□□□ -0.85
COL6A3-211ENST00000491233 POLR2GP62487 172 aaKnown RBP eCLIP9.72□□□□□ -0.85
COL6A3-211ENST00000491233 SPANXN2Q5MJ10 180 aa9.72□□□□□ -0.85
COL6A3-211ENST00000491233 AMTNQ6UX39 209 aa9.72□□□□□ -0.85
COL6A3-211ENST00000491233 OR4D5Q8NGN0 318 aa9.72□□□□□ -0.85
COL6A3-211ENST00000491233 GPR82Q96P67 336 aa9.72□□□□□ -0.85
COL6A3-211ENST00000491233 RBM38Q9H0Z9 239 aaKnown RBP9.72□□□□□ -0.85
COL6A3-211ENST00000491233 YTHDF2Q9Y5A9 579 aaKnown RBP9.72□□□□□ -0.85
COL6A3-211ENST00000491233 SSSCA1O60232 199 aa9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms