RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 ZNF546Q86UE3 836 aa11.81□□□□□ -0.52
UPF3A-208ENST00000484246 DCANP1Q8TF63 244 aa11.81□□□□□ -0.52
UPF3A-208ENST00000484246 PPP1R1CQ8WVI7 109 aa11.81□□□□□ -0.52
UPF3A-208ENST00000484246 PBDC1Q9BVG4 233 aa11.81□□□□□ -0.52
UPF3A-208ENST00000484246 SEPSECSQ9HD40 501 aaKnown RBP11.81□□□□□ -0.52
UPF3A-208ENST00000484246 CST7O76096 145 aa11.8□□□□□ -0.52
UPF3A-208ENST00000484246 RLN2P04090 185 aa11.8□□□□□ -0.52
UPF3A-208ENST00000484246 PET100P0DJ07 73 aa11.8□□□□□ -0.52
UPF3A-208ENST00000484246 S100A7P31151 101 aa11.8□□□□□ -0.52
UPF3A-208ENST00000484246 S100A11P31949 105 aa11.8□□□□□ -0.52
UPF3A-208ENST00000484246 HBG1P69891 147 aa11.8□□□□□ -0.52
UPF3A-208ENST00000484246 HBG2P69892 147 aa11.8□□□□□ -0.52
UPF3A-208ENST00000484246 OXA1LQ15070 435 aa11.8□□□□□ -0.52
UPF3A-208ENST00000484246 HAGHQ16775 308 aa11.8□□□□□ -0.52
UPF3A-208ENST00000484246 CITED4Q96RK1 184 aa11.8□□□□□ -0.52
UPF3A-208ENST00000484246 ASCL2Q99929 193 aa11.8□□□□□ -0.52
UPF3A-208ENST00000484246 TMEM147Q9BVK8 224 aa11.8□□□□□ -0.52
UPF3A-208ENST00000484246 MAP6D1Q9H9H5 199 aa11.8□□□□□ -0.52
UPF3A-208ENST00000484246 UQCC1Q9NVA1 299 aa11.8□□□□□ -0.52
UPF3A-208ENST00000484246 FBXL17Q9UF56 701 aa11.8□□□□□ -0.52
UPF3A-208ENST00000484246 BAXQ07812 192 aa11.79□□□□□ -0.52
UPF3A-208ENST00000484246 ATP6V1FQ16864 119 aa11.79□□□□□ -0.52
UPF3A-208ENST00000484246 PXDC1Q5TGL8 231 aa11.79□□□□□ -0.52
UPF3A-208ENST00000484246 SIGLEC15Q6ZMC9 328 aa11.79□□□□□ -0.52
UPF3A-208ENST00000484246 CHAC2Q8WUX2 184 aa11.79□□□□□ -0.52
UPF3A-208ENST00000484246 GGTLC1Q9BX51 225 aa11.79□□□□□ -0.52
UPF3A-208ENST00000484246 SLC25A31Q9H0C2 315 aa11.79□□□□□ -0.52
UPF3A-208ENST00000484246 OR5AC2Q9NZP5 309 aa11.79□□□□□ -0.52
UPF3A-208ENST00000484246 WDR83OSQ9Y284 106 aa11.79□□□□□ -0.52
UPF3A-208ENST00000484246 U3KQK5 164 aa11.79□□□□□ -0.52
UPF3A-208ENST00000484246 NBEAL2Q6ZNJ1 2754 aa11.79□□□□□ -0.52
UPF3A-208ENST00000484246 IGKV3-7A0A075B6H7 116 aa11.78□□□□□ -0.52
UPF3A-208ENST00000484246 LOC102724200A0A096LPH7 203 aaPredicted RBP11.78□□□□□ -0.52
UPF3A-208ENST00000484246 DNASE2O00115 360 aaPredicted RBP11.78□□□□□ -0.52
UPF3A-208ENST00000484246 MPC2O95563 127 aa11.78□□□□□ -0.52
UPF3A-208ENST00000484246 LINC00869P0C866 280 aa11.78□□□□□ -0.52
UPF3A-208ENST00000484246 GATA2P23769 480 aaPredicted RBP11.78□□□□□ -0.52
UPF3A-208ENST00000484246 TFPI2P48307 235 aa11.78□□□□□ -0.52
UPF3A-208ENST00000484246 RPL11P62913 178 aaKnown RBP11.78□□□□□ -0.52
UPF3A-208ENST00000484246 EWSR1Q01844 656 aaKnown RBP eCLIP11.78□□□□□ -0.52
UPF3A-208ENST00000484246 LRRC37A5PQ49AS3 106 aa11.78□□□□□ -0.52
UPF3A-208ENST00000484246 GBGT1Q8N5D6 347 aa11.78□□□□□ -0.52
UPF3A-208ENST00000484246 TMEM217Q8N7C4 229 aa11.78□□□□□ -0.52
UPF3A-208ENST00000484246 STXBP6Q8NFX7 210 aa11.78□□□□□ -0.52
UPF3A-208ENST00000484246 ASB13Q8WXK3 278 aa11.78□□□□□ -0.52
UPF3A-208ENST00000484246 MGST2Q99735 147 aa11.78□□□□□ -0.52
UPF3A-208ENST00000484246 SPATA25Q9BR10 227 aa11.78□□□□□ -0.52
UPF3A-208ENST00000484246 NRN1Q9NPD7 142 aa11.78□□□□□ -0.52
UPF3A-208ENST00000484246 UBQLN2Q9UHD9 624 aa11.78□□□□□ -0.52
UPF3A-208ENST00000484246 HUWE1Q7Z6Z7 4374 aaKnown RBP11.77□□□□□ -0.53
UPF3A-208ENST00000484246 KIR2DL5BA0A0G2JN68 375 aa11.77□□□□□ -0.53
UPF3A-208ENST00000484246 KIR2DL5BA0A0G2JPC4 375 aa11.77□□□□□ -0.53
UPF3A-208ENST00000484246 AGPAT2O15120 278 aa11.77□□□□□ -0.53
UPF3A-208ENST00000484246 LYL1P12980 280 aa11.77□□□□□ -0.53
UPF3A-208ENST00000484246 CXCL3P19876 107 aa11.77□□□□□ -0.53
UPF3A-208ENST00000484246 SAMD13Q5VXD3 122 aa11.77□□□□□ -0.53
UPF3A-208ENST00000484246 KIR2DL5AQ8N109 375 aa11.77□□□□□ -0.53
UPF3A-208ENST00000484246 KIR2DL5BQ8NHK3 375 aa11.77□□□□□ -0.53
UPF3A-208ENST00000484246 RNF126Q9BV68 326 aa11.77□□□□□ -0.53
UPF3A-208ENST00000484246 ZMAT4Q9H898 229 aa11.77□□□□□ -0.53
UPF3A-208ENST00000484246 KMT2CQ8NEZ4 4911 aaKnown RBP11.76□□□□□ -0.53
UPF3A-208ENST00000484246 ZNF98A6NK75 572 aa11.76□□□□□ -0.53
UPF3A-208ENST00000484246 H3BRN7 92 aa11.76□□□□□ -0.53
UPF3A-208ENST00000484246 HYPMO75409 117 aa11.76□□□□□ -0.53
UPF3A-208ENST00000484246 RAB31Q13636 194 aa11.76□□□□□ -0.53
UPF3A-208ENST00000484246 S100A7AQ86SG5 101 aa11.76□□□□□ -0.53
UPF3A-208ENST00000484246 FAM24BQ8N5W8 94 aa11.76□□□□□ -0.53
UPF3A-208ENST00000484246 OR11H7Q8NGC8 314 aa11.76□□□□□ -0.53
UPF3A-208ENST00000484246 GPR82Q96P67 336 aa11.76□□□□□ -0.53
UPF3A-208ENST00000484246 SHANK2-AS3Q9BTD1 123 aa11.76□□□□□ -0.53
UPF3A-208ENST00000484246 MED28Q9H204 178 aa11.76□□□□□ -0.53
UPF3A-208ENST00000484246 MPDU1O75352 247 aa11.75□□□□□ -0.53
UPF3A-208ENST00000484246 ORM2P19652 201 aa11.75□□□□□ -0.53
UPF3A-208ENST00000484246 SMCPP49901 116 aaPredicted RBP11.75□□□□□ -0.53
UPF3A-208ENST00000484246 RAP2BP61225 183 aa11.75□□□□□ -0.53
UPF3A-208ENST00000484246 OPCMLQ14982 345 aa11.75□□□□□ -0.53
UPF3A-208ENST00000484246 FCN2Q15485 313 aa11.75□□□□□ -0.53
UPF3A-208ENST00000484246 WFDC3Q8IUB2 231 aa11.75□□□□□ -0.53
UPF3A-208ENST00000484246 OR1B1Q8NGR6 318 aa11.75□□□□□ -0.53
UPF3A-208ENST00000484246 PPP1R14BQ96C90 147 aa11.75□□□□□ -0.53
UPF3A-208ENST00000484246 RCHY1Q96PM5 261 aa11.75□□□□□ -0.53
UPF3A-208ENST00000484246 SLC25A39Q9BZJ4 359 aaPredicted RBP11.75□□□□□ -0.53
UPF3A-208ENST00000484246 SLC25A32Q9H2D1 315 aa11.75□□□□□ -0.53
UPF3A-208ENST00000484246 RNF24Q9Y225 148 aa11.75□□□□□ -0.53
UPF3A-208ENST00000484246 HIGD1AQ9Y241 93 aa11.75□□□□□ -0.53
UPF3A-208ENST00000484246 RYR3Q15413 4870 aa11.75□□□□□ -0.53
UPF3A-208ENST00000484246 UBE2L5PA0A1B0GUS4 154 aa11.74□□□□□ -0.53
UPF3A-208ENST00000484246 SOCS3O14543 225 aa11.74□□□□□ -0.53
UPF3A-208ENST00000484246 CAMLGP49069 296 aa11.74□□□□□ -0.53
UPF3A-208ENST00000484246 MEOX2P50222 304 aa11.74□□□□□ -0.53
UPF3A-208ENST00000484246 APOC4P55056 127 aa11.74□□□□□ -0.53
UPF3A-208ENST00000484246 DEFB131AP59861 70 aa11.74□□□□□ -0.53
UPF3A-208ENST00000484246 APRG1Q8IVJ8 170 aa11.74□□□□□ -0.53
UPF3A-208ENST00000484246 OR8I2Q8N0Y5 310 aa11.74□□□□□ -0.53
UPF3A-208ENST00000484246 MBD2Q9UBB5 411 aa11.74□□□□□ -0.53
UPF3A-208ENST00000484246 ELOA3CA0A087WX78 387 aaPredicted RBP11.73□□□□□ -0.53
UPF3A-208ENST00000484246 UBE2CO00762 179 aa11.73□□□□□ -0.53
UPF3A-208ENST00000484246 GIPP09681 153 aaPredicted RBP11.73□□□□□ -0.53
UPF3A-208ENST00000484246 GALR1P47211 349 aa11.73□□□□□ -0.53
UPF3A-208ENST00000484246 RPL29P47914 159 aaKnown RBP11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms