RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 FAM167A-AS1Q96KT0 104 aa6.32□□□□□ -1.4
USP4-210ENST00000483212 UHRF2Q96PU4 802 aa6.32□□□□□ -1.4
USP4-210ENST00000483212 CITED2Q99967 270 aaPredicted RBP6.32□□□□□ -1.4
USP4-210ENST00000483212 C19orf24Q9BVV8 132 aa6.32□□□□□ -1.4
USP4-210ENST00000483212 MRPL32Q9BYC8 188 aaKnown RBP6.32□□□□□ -1.4
USP4-210ENST00000483212 SLC25A22Q9H936 323 aa6.32□□□□□ -1.4
USP4-210ENST00000483212 DOK5Q9P104 306 aa6.32□□□□□ -1.4
USP4-210ENST00000483212 FUT9Q9Y231 359 aa6.32□□□□□ -1.4
USP4-210ENST00000483212 JMJD1CQ15652 2540 aa6.31□□□□□ -1.4
USP4-210ENST00000483212 ELOA3CA0A087WX78 387 aaPredicted RBP6.31□□□□□ -1.4
USP4-210ENST00000483212 TRAV5A0A0B4J249 113 aa6.31□□□□□ -1.4
USP4-210ENST00000483212 H3BRN7 92 aa6.31□□□□□ -1.4
USP4-210ENST00000483212 NDUFA4O00483 81 aa6.31□□□□□ -1.4
USP4-210ENST00000483212 COX7A2P2O60397 106 aa6.31□□□□□ -1.4
USP4-210ENST00000483212 HYPMO75409 117 aa6.31□□□□□ -1.4
USP4-210ENST00000483212 HSPB1P04792 205 aaKnown RBP6.31□□□□□ -1.4
USP4-210ENST00000483212 STAG3L2P0CL84 134 aa6.31□□□□□ -1.4
USP4-210ENST00000483212 STAG3L3P0CL85 134 aa6.31□□□□□ -1.4
USP4-210ENST00000483212 ORM2P19652 201 aa6.31□□□□□ -1.4
USP4-210ENST00000483212 BLOC1S1P78537 153 aa6.31□□□□□ -1.4
USP4-210ENST00000483212 CCL20P78556 96 aa6.31□□□□□ -1.4
USP4-210ENST00000483212 FHL3Q13643 280 aa6.31□□□□□ -1.4
USP4-210ENST00000483212 FAM78BQ5VT40 261 aa6.31□□□□□ -1.4
USP4-210ENST00000483212 C10orf113Q5VZT2 155 aa6.31□□□□□ -1.4
USP4-210ENST00000483212 GPHB5Q86YW7 130 aa6.31□□□□□ -1.4
USP4-210ENST00000483212 C11orf44Q8N8P7 122 aa6.31□□□□□ -1.4
USP4-210ENST00000483212 OR1B1Q8NGR6 318 aa6.31□□□□□ -1.4
USP4-210ENST00000483212 TMEM190Q8WZ59 177 aa6.31□□□□□ -1.4
USP4-210ENST00000483212 PFDN5Q99471 154 aa6.31□□□□□ -1.4
USP4-210ENST00000483212 SHANK2-AS3Q9BTD1 123 aa6.31□□□□□ -1.4
USP4-210ENST00000483212 SLC25A2Q9BXI2 301 aa6.31□□□□□ -1.4
USP4-210ENST00000483212 ACTR3CQ9C0K3 210 aaPredicted RBP6.31□□□□□ -1.4
USP4-210ENST00000483212 DNAJC4Q9NNZ3 241 aa6.31□□□□□ -1.4
USP4-210ENST00000483212 U3KQE9 123 aa6.31□□□□□ -1.4
USP4-210ENST00000483212 IGHV3OR16-8A0A075B7F1 116 aa6.3□□□□□ -1.4
USP4-210ENST00000483212 MAP1LC3B2A6NCE7 125 aa6.3□□□□□ -1.4
USP4-210ENST00000483212 LINC00862A6NCI5 91 aa6.3□□□□□ -1.4
USP4-210ENST00000483212 J3QL48 77 aa6.3□□□□□ -1.4
USP4-210ENST00000483212 MRPS12O15235 138 aaKnown RBP6.3□□□□□ -1.4
USP4-210ENST00000483212 HMGB3O15347 200 aaKnown RBP6.3□□□□□ -1.4
USP4-210ENST00000483212 H2AFB1P0C5Y9 115 aa6.3□□□□□ -1.4
USP4-210ENST00000483212 RAB14P61106 215 aa6.3□□□□□ -1.4
USP4-210ENST00000483212 RHOBP62745 196 aa6.3□□□□□ -1.4
USP4-210ENST00000483212 FOXL1Q12952 345 aa6.3□□□□□ -1.4
USP4-210ENST00000483212 DEFB136Q30KP8 78 aa6.3□□□□□ -1.4
USP4-210ENST00000483212 AWAT1Q58HT5 328 aa6.3□□□□□ -1.4
USP4-210ENST00000483212 LCN15Q6UWW0 184 aa6.3□□□□□ -1.4
USP4-210ENST00000483212 C8orf86Q6ZUL3 223 aa6.3□□□□□ -1.4
USP4-210ENST00000483212 LINC00305Q7Z4B0 112 aa6.3□□□□□ -1.4
USP4-210ENST00000483212 REC114Q7Z4M0 266 aa6.3□□□□□ -1.4
USP4-210ENST00000483212 KLHL30-AS1Q8NEE0 82 aa6.3□□□□□ -1.4
USP4-210ENST00000483212 SUN5Q8TC36 379 aa6.3□□□□□ -1.4
USP4-210ENST00000483212 RNF2Q99496 336 aa6.3□□□□□ -1.4
USP4-210ENST00000483212 PBDC1Q9BVG4 233 aa6.3□□□□□ -1.4
USP4-210ENST00000483212 SCRT1Q9BWW7 348 aa6.3□□□□□ -1.4
USP4-210ENST00000483212 SLC25A39Q9BZJ4 359 aaPredicted RBP6.3□□□□□ -1.4
USP4-210ENST00000483212 MAP1LC3BQ9GZQ8 125 aa6.3□□□□□ -1.4
USP4-210ENST00000483212 MED9Q9NWA0 146 aa6.3□□□□□ -1.4
USP4-210ENST00000483212 TECRQ9NZ01 308 aaKnown RBP6.3□□□□□ -1.4
USP4-210ENST00000483212 HIGD1AQ9Y241 93 aa6.3□□□□□ -1.4
USP4-210ENST00000483212 TSSC4Q9Y5U2 329 aaPredicted RBP6.3□□□□□ -1.4
USP4-210ENST00000483212 SETD2Q9BYW2 2564 aaPredicted RBP6.3□□□□□ -1.4
USP4-210ENST00000483212 TENM1Q9UKZ4 2725 aa6.29□□□□□ -1.4
USP4-210ENST00000483212 FBN1P35555 2871 aaKnown RBP6.29□□□□□ -1.4
USP4-210ENST00000483212 A0A1W2PPV4 95 aa6.29□□□□□ -1.4
USP4-210ENST00000483212 A8MWP6 167 aa6.29□□□□□ -1.4
USP4-210ENST00000483212 LINC01619G3V211 115 aa6.29□□□□□ -1.4
USP4-210ENST00000483212 LGALS9O00182 355 aa6.29□□□□□ -1.4
USP4-210ENST00000483212 APOHP02749 345 aaPredicted RBP6.29□□□□□ -1.4
USP4-210ENST00000483212 C8orf88P0DMB2 117 aa6.29□□□□□ -1.4
USP4-210ENST00000483212 GP9P14770 177 aa6.29□□□□□ -1.4
USP4-210ENST00000483212 EDN2P20800 178 aa6.29□□□□□ -1.4
USP4-210ENST00000483212 CRYBB3P26998 211 aa6.29□□□□□ -1.4
USP4-210ENST00000483212 HOXD3P31249 432 aaPredicted RBP6.29□□□□□ -1.4
USP4-210ENST00000483212 FGF8P55075 233 aaPredicted RBP6.29□□□□□ -1.4
USP4-210ENST00000483212 PMS2P11Q13670 270 aa6.29□□□□□ -1.4
USP4-210ENST00000483212 KLF5Q13887 457 aaPredicted RBP6.29□□□□□ -1.4
USP4-210ENST00000483212 KHDC1LQ5JSQ8 128 aa6.29□□□□□ -1.4
USP4-210ENST00000483212 LEMD1Q68G75 181 aa6.29□□□□□ -1.4
USP4-210ENST00000483212 OR1N2Q8NGR9 330 aa6.29□□□□□ -1.4
USP4-210ENST00000483212 SFT2D1Q8WV19 159 aa6.29□□□□□ -1.4
USP4-210ENST00000483212 RAX2Q96IS3 184 aa6.29□□□□□ -1.4
USP4-210ENST00000483212 C17orf77Q96MU5 243 aa6.29□□□□□ -1.4
USP4-210ENST00000483212 DUX3Q96PT4 197 aa6.29□□□□□ -1.4
USP4-210ENST00000483212 CITED1Q99966 193 aa6.29□□□□□ -1.4
USP4-210ENST00000483212 HRH4Q9H3N8 390 aa6.29□□□□□ -1.4
USP4-210ENST00000483212 RABAC1Q9UI14 185 aa6.29□□□□□ -1.4
USP4-210ENST00000483212 ATRQ13535 2644 aa6.28□□□□□ -1.4
USP4-210ENST00000483212 A0A1B0GV50 99 aa6.28□□□□□ -1.4
USP4-210ENST00000483212 A0A1W2PRX2 142 aa6.28□□□□□ -1.4
USP4-210ENST00000483212 TMEM213A2RRL7 107 aa6.28□□□□□ -1.4
USP4-210ENST00000483212 ZNF98A6NK75 572 aa6.28□□□□□ -1.4
USP4-210ENST00000483212 TEX46H3BTG2 121 aa6.28□□□□□ -1.4
USP4-210ENST00000483212 K7EMT4 169 aa6.28□□□□□ -1.4
USP4-210ENST00000483212 ZNF207O43670 478 aaKnown RBP6.28□□□□□ -1.4
USP4-210ENST00000483212 BUB3O43684 328 aa6.28□□□□□ -1.4
USP4-210ENST00000483212 CXorf1O96002 111 aa6.28□□□□□ -1.4
USP4-210ENST00000483212 HBE1P02100 147 aa6.28□□□□□ -1.4
USP4-210ENST00000483212 ARL14EPLP0DKL9 152 aa6.28□□□□□ -1.4
USP4-210ENST00000483212 ZP3P21754 424 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms