RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 PSMG3Q9BT73 122 aaPredicted RBP9.31□□□□□ -0.92
SDC1-206ENST00000482879 SH3BGRL3Q9H299 93 aa9.31□□□□□ -0.92
SDC1-206ENST00000482879 DNAJC4Q9NNZ3 241 aa9.31□□□□□ -0.92
SDC1-206ENST00000482879 MRPL27Q9P0M9 148 aaKnown RBP9.31□□□□□ -0.92
SDC1-206ENST00000482879 IGHV3OR16-13A0A075B7E8 117 aa9.3□□□□□ -0.92
SDC1-206ENST00000482879 IGHV3-74A0A0B4J1X5 117 aa9.3□□□□□ -0.92
SDC1-206ENST00000482879 IGHV7-4-1A0A0J9YVY3 117 aa9.3□□□□□ -0.92
SDC1-206ENST00000482879 SEC14L6B5MCN3 397 aa9.3□□□□□ -0.92
SDC1-206ENST00000482879 TPT1P13693 172 aaKnown RBP9.3□□□□□ -0.92
SDC1-206ENST00000482879 FOLR2P14207 255 aa9.3□□□□□ -0.92
SDC1-206ENST00000482879 CBLN1P23435 193 aa9.3□□□□□ -0.92
SDC1-206ENST00000482879 CRYBB3P26998 211 aa9.3□□□□□ -0.92
SDC1-206ENST00000482879 PATE2Q6UY27 113 aa9.3□□□□□ -0.92
SDC1-206ENST00000482879 SLC51BQ86UW2 128 aa9.3□□□□□ -0.92
SDC1-206ENST00000482879 BAP18Q8IXM2 172 aa9.3□□□□□ -0.92
SDC1-206ENST00000482879 OR2G3Q8NGZ4 309 aa9.3□□□□□ -0.92
SDC1-206ENST00000482879 MARC2Q969Z3 335 aa9.3□□□□□ -0.92
SDC1-206ENST00000482879 NARS2Q96I59 477 aaKnown RBP9.3□□□□□ -0.92
SDC1-206ENST00000482879 SLC25A32Q9H2D1 315 aa9.3□□□□□ -0.92
SDC1-206ENST00000482879 SMPXQ9UHP9 88 aa9.3□□□□□ -0.92
SDC1-206ENST00000482879 PFDN2Q9UHV9 154 aa9.3□□□□□ -0.92
SDC1-206ENST00000482879 HIGD1AQ9Y241 93 aa9.3□□□□□ -0.92
SDC1-206ENST00000482879 SORL1Q92673 2214 aa9.29□□□□□ -0.92
SDC1-206ENST00000482879 ELOA3CA0A087WX78 387 aaPredicted RBP9.29□□□□□ -0.92
SDC1-206ENST00000482879 IGHV3-66A0A0C4DH42 116 aa9.29□□□□□ -0.92
SDC1-206ENST00000482879 A0A1W2PS18 150 aa9.29□□□□□ -0.92
SDC1-206ENST00000482879 SAP30O75446 220 aa9.29□□□□□ -0.92
SDC1-206ENST00000482879 APOHP02749 345 aaPredicted RBP9.29□□□□□ -0.92
SDC1-206ENST00000482879 C8orf88P0DMB2 117 aa9.29□□□□□ -0.92
SDC1-206ENST00000482879 SPP1P10451 314 aa9.29□□□□□ -0.92
SDC1-206ENST00000482879 S100A7P31151 101 aa9.29□□□□□ -0.92
SDC1-206ENST00000482879 BMI1P35226 326 aa9.29□□□□□ -0.92
SDC1-206ENST00000482879 SERF2P84101 59 aa9.29□□□□□ -0.92
SDC1-206ENST00000482879 ACOT6Q3I5F7 207 aaPredicted RBP9.29□□□□□ -0.92
SDC1-206ENST00000482879 GCSAMLQ5JQS6 135 aa9.29□□□□□ -0.92
SDC1-206ENST00000482879 C10orf113Q5VZT2 155 aa9.29□□□□□ -0.92
SDC1-206ENST00000482879 ADAMTSL5Q6ZMM2 481 aa9.29□□□□□ -0.92
SDC1-206ENST00000482879 S100A7AQ86SG5 101 aa9.29□□□□□ -0.92
SDC1-206ENST00000482879 STOML3Q8TAV4 291 aa9.29□□□□□ -0.92
SDC1-206ENST00000482879 TMEM37Q8WXS4 190 aa9.29□□□□□ -0.92
SDC1-206ENST00000482879 ST8SIA2Q92186 375 aa9.29□□□□□ -0.92
SDC1-206ENST00000482879 PFDN5Q99471 154 aa9.29□□□□□ -0.92
SDC1-206ENST00000482879 RHPN1-AS1Q9BWJ2 59 aa9.29□□□□□ -0.92
SDC1-206ENST00000482879 U3KQE9 123 aa9.29□□□□□ -0.92
SDC1-206ENST00000482879 CHEK1O14757 476 aa9.28□□□□□ -0.92
SDC1-206ENST00000482879 PRR31Q5SQ13 230 aa9.28□□□□□ -0.92
SDC1-206ENST00000482879 LINC00305Q7Z4B0 112 aa9.28□□□□□ -0.92
SDC1-206ENST00000482879 DYNLRB2Q8TF09 96 aa9.28□□□□□ -0.92
SDC1-206ENST00000482879 GATAD1Q8WUU5 269 aa9.28□□□□□ -0.92
SDC1-206ENST00000482879 GRAMD2BQ96HH9 432 aa9.28□□□□□ -0.92
SDC1-206ENST00000482879 UHRF2Q96PU4 802 aa9.28□□□□□ -0.92
SDC1-206ENST00000482879 MCRIP2Q9BUT9 160 aaKnown RBP9.28□□□□□ -0.92
SDC1-206ENST00000482879 SLC25A39Q9BZJ4 359 aaPredicted RBP9.28□□□□□ -0.92
SDC1-206ENST00000482879 TMEM231Q9H6L2 316 aa9.28□□□□□ -0.92
SDC1-206ENST00000482879 VSIRQ9H7M9 311 aa9.28□□□□□ -0.92
SDC1-206ENST00000482879 SIGLEC8Q9NYZ4 499 aa9.28□□□□□ -0.92
SDC1-206ENST00000482879 SELENOKQ9Y6D0 94 aa9.28□□□□□ -0.92
SDC1-206ENST00000482879 TRRAPQ9Y4A5 3859 aa9.28□□□□□ -0.92
SDC1-206ENST00000482879 ZNF98A6NK75 572 aa9.27□□□□□ -0.93
SDC1-206ENST00000482879 H3BRN7 92 aa9.27□□□□□ -0.93
SDC1-206ENST00000482879 BUB3O43684 328 aa9.27□□□□□ -0.93
SDC1-206ENST00000482879 MBP02144 154 aa9.27□□□□□ -0.93
SDC1-206ENST00000482879 SEC11BP0C7V7 166 aa9.27□□□□□ -0.93
SDC1-206ENST00000482879 IGLL1P15814 213 aa9.27□□□□□ -0.93
SDC1-206ENST00000482879 M6PRP20645 277 aa9.27□□□□□ -0.93
SDC1-206ENST00000482879 RAB2AP61019 212 aa9.27□□□□□ -0.93
SDC1-206ENST00000482879 AKR1C8PQ5T2L2 129 aa9.27□□□□□ -0.93
SDC1-206ENST00000482879 C9orf66Q5T8R8 295 aa9.27□□□□□ -0.93
SDC1-206ENST00000482879 FAM78BQ5VT40 261 aa9.27□□□□□ -0.93
SDC1-206ENST00000482879 RNF2Q99496 336 aa9.27□□□□□ -0.93
SDC1-206ENST00000482879 SHANK2-AS3Q9BTD1 123 aa9.27□□□□□ -0.93
SDC1-206ENST00000482879 SCRT1Q9BWW7 348 aa9.27□□□□□ -0.93
SDC1-206ENST00000482879 SLC25A22Q9H936 323 aa9.27□□□□□ -0.93
SDC1-206ENST00000482879 MLXQ9UH92 298 aa9.27□□□□□ -0.93
SDC1-206ENST00000482879 ANK2Q01484 3957 aa9.26□□□□□ -0.93
SDC1-206ENST00000482879 INSL3P51460 131 aa9.26□□□□□ -0.93
SDC1-206ENST00000482879 DEFB114Q30KQ6 69 aa9.26□□□□□ -0.93
SDC1-206ENST00000482879 TMEM41BQ5BJD5 291 aa9.26□□□□□ -0.93
SDC1-206ENST00000482879 LEMD1Q68G75 181 aa9.26□□□□□ -0.93
SDC1-206ENST00000482879 EIF5AL1Q6IS14 154 aaKnown RBP9.26□□□□□ -0.93
SDC1-206ENST00000482879 FAM122CQ6P4D5 195 aa9.26□□□□□ -0.93
SDC1-206ENST00000482879 C16orf54Q6UWD8 224 aa9.26□□□□□ -0.93
SDC1-206ENST00000482879 OR8I2Q8N0Y5 310 aa9.26□□□□□ -0.93
SDC1-206ENST00000482879 OR10G4Q8NGN3 311 aa9.26□□□□□ -0.93
SDC1-206ENST00000482879 OR10G9Q8NGN4 311 aa9.26□□□□□ -0.93
SDC1-206ENST00000482879 OR10G7Q8NGN6 311 aa9.26□□□□□ -0.93
SDC1-206ENST00000482879 TMED6Q8WW62 240 aa9.26□□□□□ -0.93
SDC1-206ENST00000482879 SEPSECSQ9HD40 501 aaKnown RBP9.26□□□□□ -0.93
SDC1-206ENST00000482879 TECRQ9NZ01 308 aaKnown RBP9.26□□□□□ -0.93
SDC1-206ENST00000482879 RNF24Q9Y225 148 aa9.26□□□□□ -0.93
SDC1-206ENST00000482879 TRAV5A0A0B4J249 113 aa9.25□□□□□ -0.93
SDC1-206ENST00000482879 A0A1W2PPV4 95 aa9.25□□□□□ -0.93
SDC1-206ENST00000482879 RHOBP62745 196 aa9.25□□□□□ -0.93
SDC1-206ENST00000482879 C1orf194Q5T5A4 169 aa9.25□□□□□ -0.93
SDC1-206ENST00000482879 MORN5Q5VZ52 161 aa9.25□□□□□ -0.93
SDC1-206ENST00000482879 SPATA31B1PQ5VZV4 182 aa9.25□□□□□ -0.93
SDC1-206ENST00000482879 MIR17HGQ75NE6 70 aa9.25□□□□□ -0.93
SDC1-206ENST00000482879 TCF24Q7RTU0 167 aa9.25□□□□□ -0.93
SDC1-206ENST00000482879 GLMPQ8WWB7 406 aa9.25□□□□□ -0.93
SDC1-206ENST00000482879 MRPL32Q9BYC8 188 aaKnown RBP9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms