RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 RAB11AP62491 216 aa13.51□□□□□ -0.25
CCDC88B-206ENST00000473405 C12orf74Q32Q52 190 aa13.51□□□□□ -0.25
CCDC88B-206ENST00000473405 ZNF767PQ75MW2 155 aa13.51□□□□□ -0.25
CCDC88B-206ENST00000473405 ZNF709Q8N972 641 aa13.51□□□□□ -0.25
CCDC88B-206ENST00000473405 MAGT1Q9H0U3 335 aa13.51□□□□□ -0.25
CCDC88B-206ENST00000473405 HERC2O95714 4834 aa13.51□□□□□ -0.25
CCDC88B-206ENST00000473405 IGHV4-4A0A075B6R2 117 aa13.5□□□□□ -0.25
CCDC88B-206ENST00000473405 ZNF705FA8MVS1 300 aaPredicted RBP13.5□□□□□ -0.25
CCDC88B-206ENST00000473405 SYNGR2O43760 224 aa13.5□□□□□ -0.25
CCDC88B-206ENST00000473405 MED6O75586 246 aa13.5□□□□□ -0.25
CCDC88B-206ENST00000473405 ZNF705DP0CH99 300 aaPredicted RBP13.5□□□□□ -0.25
CCDC88B-206ENST00000473405 ZNF705BP0CI00 300 aaPredicted RBP13.5□□□□□ -0.25
CCDC88B-206ENST00000473405 S100A5P33763 92 aa13.5□□□□□ -0.25
CCDC88B-206ENST00000473405 FOXI2Q6ZQN5 318 aa13.5□□□□□ -0.25
CCDC88B-206ENST00000473405 CENPSQ8N2Z9 138 aa13.5□□□□□ -0.25
CCDC88B-206ENST00000473405 LINC00052Q96N35 136 aa13.5□□□□□ -0.25
CCDC88B-206ENST00000473405 PAIP2BQ9ULR5 123 aaKnown RBP13.5□□□□□ -0.25
CCDC88B-206ENST00000473405 CCDC160A6NGH7 325 aa13.49□□□□□ -0.25
CCDC88B-206ENST00000473405 IGKV3-20P01619 116 aa13.49□□□□□ -0.25
CCDC88B-206ENST00000473405 HOXB5P09067 269 aa13.49□□□□□ -0.25
CCDC88B-206ENST00000473405 C17orf77Q96MU5 243 aa13.49□□□□□ -0.25
CCDC88B-206ENST00000473405 CLUHP3Q96NS8 147 aa13.49□□□□□ -0.25
CCDC88B-206ENST00000473405 CIB3Q96Q77 187 aaPredicted RBP13.49□□□□□ -0.25
CCDC88B-206ENST00000473405 DNAH17Q9UFH2 4485 aa13.49□□□□□ -0.25
CCDC88B-206ENST00000473405 WRBO00258 174 aa13.48□□□□□ -0.25
CCDC88B-206ENST00000473405 ISLRO14498 428 aa13.48□□□□□ -0.25
CCDC88B-206ENST00000473405 AMBPP02760 352 aa13.48□□□□□ -0.25
CCDC88B-206ENST00000473405 ID1P41134 155 aa13.48□□□□□ -0.25
CCDC88B-206ENST00000473405 FXYD7P58549 80 aa13.48□□□□□ -0.25
CCDC88B-206ENST00000473405 GGNBP1Q5YKI7 109 aa13.48□□□□□ -0.25
CCDC88B-206ENST00000473405 OR8I2Q8N0Y5 310 aa13.48□□□□□ -0.25
CCDC88B-206ENST00000473405 COQ8AQ8NI60 647 aa13.48□□□□□ -0.25
CCDC88B-206ENST00000473405 PPP1R14BQ96C90 147 aa13.48□□□□□ -0.25
CCDC88B-206ENST00000473405 NEU1Q99519 415 aa13.48□□□□□ -0.25
CCDC88B-206ENST00000473405 RNF126Q9BV68 326 aa13.48□□□□□ -0.25
CCDC88B-206ENST00000473405 SCRT1Q9BWW7 348 aa13.48□□□□□ -0.25
CCDC88B-206ENST00000473405 SRRQ9GZT4 340 aa13.48□□□□□ -0.25
CCDC88B-206ENST00000473405 DEFB131BA0A096LNP1 70 aa13.47□□□□□ -0.25
CCDC88B-206ENST00000473405 F6UB75 175 aa13.47□□□□□ -0.25
CCDC88B-206ENST00000473405 H3BP45 60 aa13.47□□□□□ -0.25
CCDC88B-206ENST00000473405 PAX9P55771 341 aa13.47□□□□□ -0.25
CCDC88B-206ENST00000473405 UBE2MP61081 183 aaKnown RBP13.47□□□□□ -0.25
CCDC88B-206ENST00000473405 TMEM182Q6ZP80 229 aaPredicted RBP13.47□□□□□ -0.25
CCDC88B-206ENST00000473405 C20orf173Q96LM9 149 aa13.47□□□□□ -0.25
CCDC88B-206ENST00000473405 SLC25A32Q9H2D1 315 aa13.47□□□□□ -0.25
CCDC88B-206ENST00000473405 ADAP1O75689 374 aa13.46□□□□□ -0.25
CCDC88B-206ENST00000473405 GATA2P23769 480 aaPredicted RBP13.46□□□□□ -0.25
CCDC88B-206ENST00000473405 RPP30P78346 268 aaKnown RBP13.46□□□□□ -0.25
CCDC88B-206ENST00000473405 SPANXN5Q5MJ07 72 aa13.46□□□□□ -0.25
CCDC88B-206ENST00000473405 ACOT7LQ6ZUV0 252 aa13.46□□□□□ -0.25
CCDC88B-206ENST00000473405 SLC35B3Q9H1N7 401 aa13.46□□□□□ -0.25
CCDC88B-206ENST00000473405 SLC45A2Q9UMX9 530 aa13.46□□□□□ -0.25
CCDC88B-206ENST00000473405 A0A0J9YX75 114 aa13.45□□□□□ -0.26
CCDC88B-206ENST00000473405 C9orf170A2RU37 121 aa13.45□□□□□ -0.26
CCDC88B-206ENST00000473405 CFDP00746 253 aaPredicted RBP13.45□□□□□ -0.26
CCDC88B-206ENST00000473405 CNPY1Q3B7I2 92 aa13.45□□□□□ -0.26
CCDC88B-206ENST00000473405 SPANXN2Q5MJ10 180 aa13.45□□□□□ -0.26
CCDC88B-206ENST00000473405 FAM78BQ5VT40 261 aa13.45□□□□□ -0.26
CCDC88B-206ENST00000473405 SPATA31B1PQ5VZV4 182 aa13.45□□□□□ -0.26
CCDC88B-206ENST00000473405 OR4B1Q8NGF8 309 aa13.45□□□□□ -0.26
CCDC88B-206ENST00000473405 SLC25A22Q9H936 323 aa13.45□□□□□ -0.26
CCDC88B-206ENST00000473405 PKD1P98161 4303 aa13.45□□□□□ -0.26
CCDC88B-206ENST00000473405 SMIM9A6NGZ8 99 aa13.44□□□□□ -0.26
CCDC88B-206ENST00000473405 ZNF98A6NK75 572 aa13.44□□□□□ -0.26
CCDC88B-206ENST00000473405 NDUFB6O95139 128 aa13.44□□□□□ -0.26
CCDC88B-206ENST00000473405 MEOX2P50222 304 aa13.44□□□□□ -0.26
CCDC88B-206ENST00000473405 AKR1C1Q04828 323 aa13.44□□□□□ -0.26
CCDC88B-206ENST00000473405 BAK1Q16611 211 aa13.44□□□□□ -0.26
CCDC88B-206ENST00000473405 SAMD13Q5VXD3 122 aa13.44□□□□□ -0.26
CCDC88B-206ENST00000473405 FLVCR2Q9UPI3 526 aa13.44□□□□□ -0.26
CCDC88B-206ENST00000473405 STRAPQ9Y3F4 350 aaKnown RBP13.44□□□□□ -0.26
CCDC88B-206ENST00000473405 IGHV3OR16-12A0A075B7B8 117 aa13.43□□□□□ -0.26
CCDC88B-206ENST00000473405 A8MTW9 85 aa13.43□□□□□ -0.26
CCDC88B-206ENST00000473405 ORM2P19652 201 aa13.43□□□□□ -0.26
CCDC88B-206ENST00000473405 GALR1P47211 349 aa13.43□□□□□ -0.26
CCDC88B-206ENST00000473405 POLR2GP62487 172 aaKnown RBP eCLIP13.43□□□□□ -0.26
CCDC88B-206ENST00000473405 PSG9Q00887 426 aa13.43□□□□□ -0.26
CCDC88B-206ENST00000473405 ID3Q02535 119 aa13.43□□□□□ -0.26
CCDC88B-206ENST00000473405 KIAA1109Q2LD37 5005 aa13.43□□□□□ -0.26
CCDC88B-206ENST00000473405 EBLN2Q6P2I7 272 aa13.43□□□□□ -0.26
CCDC88B-206ENST00000473405 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa13.43□□□□□ -0.26
CCDC88B-206ENST00000473405 BPIFCQ8NFQ6 507 aa13.43□□□□□ -0.26
CCDC88B-206ENST00000473405 C16orf92Q96LL3 132 aa13.43□□□□□ -0.26
CCDC88B-206ENST00000473405 RPRMQ9NS64 109 aa13.43□□□□□ -0.26
CCDC88B-206ENST00000473405 TMEM189A5PLL7 270 aa13.42□□□□□ -0.26
CCDC88B-206ENST00000473405 BTCP35070 178 aa13.42□□□□□ -0.26
CCDC88B-206ENST00000473405 EMP1P54849 157 aa13.42□□□□□ -0.26
CCDC88B-206ENST00000473405 AMTNQ6UX39 209 aa13.42□□□□□ -0.26
CCDC88B-206ENST00000473405 TMEM144Q7Z5S9 345 aa13.42□□□□□ -0.26
CCDC88B-206ENST00000473405 C1orf158Q8N1D5 194 aa13.42□□□□□ -0.26
CCDC88B-206ENST00000473405 OR4D5Q8NGN0 318 aa13.42□□□□□ -0.26
CCDC88B-206ENST00000473405 SDHCQ99643 169 aaPredicted RBP13.42□□□□□ -0.26
CCDC88B-206ENST00000473405 RSG1Q9BU20 258 aa13.42□□□□□ -0.26
CCDC88B-206ENST00000473405 RFNGQ9Y644 331 aa13.42□□□□□ -0.26
CCDC88B-206ENST00000473405 NAP1L6A6NFF2 107 aa13.41□□□□□ -0.26
CCDC88B-206ENST00000473405 PMS2P5A8MQ11 134 aa13.41□□□□□ -0.26
CCDC88B-206ENST00000473405 SSSCA1O60232 199 aa13.41□□□□□ -0.26
CCDC88B-206ENST00000473405 SPART-AS1P0CW21 52 aa13.41□□□□□ -0.26
CCDC88B-206ENST00000473405 OR1B1Q8NGR6 318 aa13.41□□□□□ -0.26
CCDC88B-206ENST00000473405 DOK5Q9P104 306 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms