RNA–Protein interactions for RNA: ENST00000472223.5

CCM2-205, Transcript of CCM2 scaffold protein, human

TSL 3

Gene CCM2, Length 981 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCM2-205	ENST00000472223	CBLN1	P23435	193 aa		12.86	□□□□□ -0.35
CCM2-205	ENST00000472223	ATP6V0C	P27449	155 aa		12.86	□□□□□ -0.35
CCM2-205	ENST00000472223	INSL3	P51460	131 aa		12.86	□□□□□ -0.35
CCM2-205	ENST00000472223	PLP1	P60201	277 aa		12.86	□□□□□ -0.35
CCM2-205	ENST00000472223	SERF2	P84101	59 aa		12.86	□□□□□ -0.35
CCM2-205	ENST00000472223	PRR20E	P86478	221 aa		12.86	□□□□□ -0.35
CCM2-205	ENST00000472223	PRR20C	P86479	221 aa		12.86	□□□□□ -0.35
CCM2-205	ENST00000472223	PRR20D	P86480	221 aa		12.86	□□□□□ -0.35
CCM2-205	ENST00000472223	PRR20B	P86481	221 aa		12.86	□□□□□ -0.35
CCM2-205	ENST00000472223	PRR20A	P86496	221 aa		12.86	□□□□□ -0.35
CCM2-205	ENST00000472223	ACOT6	Q3I5F7	207 aa	Predicted RBP	12.86	□□□□□ -0.35
CCM2-205	ENST00000472223	FFAR4	Q5NUL3	377 aa		12.86	□□□□□ -0.35
CCM2-205	ENST00000472223	C9orf66	Q5T8R8	295 aa		12.86	□□□□□ -0.35
CCM2-205	ENST00000472223	C10orf113	Q5VZT2	155 aa		12.86	□□□□□ -0.35
CCM2-205	ENST00000472223	TMEM182	Q6ZP80	229 aa	Predicted RBP	12.86	□□□□□ -0.35
CCM2-205	ENST00000472223	SLC51B	Q86UW2	128 aa		12.86	□□□□□ -0.35
CCM2-205	ENST00000472223	IGHV7-4-1	A0A0J9YVY3	117 aa		12.85	□□□□□ -0.35
CCM2-205	ENST00000472223	CD5	P06127	495 aa		12.85	□□□□□ -0.35
CCM2-205	ENST00000472223	NKX2-5	P52952	324 aa	Predicted RBP	12.85	□□□□□ -0.35
CCM2-205	ENST00000472223	USF2	Q15853	346 aa	Predicted RBP	12.85	□□□□□ -0.35
CCM2-205	ENST00000472223	WFDC9	Q8NEX5	89 aa		12.85	□□□□□ -0.35
CCM2-205	ENST00000472223	GATAD1	Q8WUU5	269 aa		12.85	□□□□□ -0.35
CCM2-205	ENST00000472223	RNF2	Q99496	336 aa		12.85	□□□□□ -0.35
CCM2-205	ENST00000472223	ARV1	Q9H2C2	271 aa		12.85	□□□□□ -0.35
CCM2-205	ENST00000472223	CYTL1	Q9NRR1	136 aa		12.85	□□□□□ -0.35
CCM2-205	ENST00000472223	TECR	Q9NZ01	308 aa	Known RBP	12.85	□□□□□ -0.35
CCM2-205	ENST00000472223	TMEM213	A2RRL7	107 aa		12.84	□□□□□ -0.35
CCM2-205	ENST00000472223	CRYBB3	P26998	211 aa		12.84	□□□□□ -0.35
CCM2-205	ENST00000472223	LAMTOR1	Q6IAA8	161 aa		12.84	□□□□□ -0.35
CCM2-205	ENST00000472223	BAP18	Q8IXM2	172 aa		12.84	□□□□□ -0.35
CCM2-205	ENST00000472223	OR2G3	Q8NGZ4	309 aa		12.84	□□□□□ -0.35
CCM2-205	ENST00000472223	SLC25A32	Q9H2D1	315 aa		12.84	□□□□□ -0.35
CCM2-205	ENST00000472223	SIGLEC8	Q9NYZ4	499 aa		12.84	□□□□□ -0.35
CCM2-205	ENST00000472223	SMPX	Q9UHP9	88 aa		12.84	□□□□□ -0.35
CCM2-205	ENST00000472223		A0A1W2PPV4	95 aa		12.83	□□□□□ -0.36
CCM2-205	ENST00000472223	CSN3	P07498	182 aa		12.83	□□□□□ -0.36
CCM2-205	ENST00000472223	AKR1C8P	Q5T2L2	129 aa		12.83	□□□□□ -0.36
CCM2-205	ENST00000472223	RHPN1-AS1	Q9BWJ2	59 aa		12.83	□□□□□ -0.36
CCM2-205	ENST00000472223	IGHV3-49	A0A0A0MS15	119 aa		12.82	□□□□□ -0.36
CCM2-205	ENST00000472223	M6PR	P20645	277 aa		12.82	□□□□□ -0.36
CCM2-205	ENST00000472223	RPL11	P62913	178 aa	Known RBP	12.82	□□□□□ -0.36
CCM2-205	ENST00000472223	C1orf194	Q5T5A4	169 aa		12.82	□□□□□ -0.36
CCM2-205	ENST00000472223	RBPMS2	Q6ZRY4	209 aa	Known RBP	12.82	□□□□□ -0.36
CCM2-205	ENST00000472223	LINC00305	Q7Z4B0	112 aa		12.82	□□□□□ -0.36
CCM2-205	ENST00000472223	OR8I2	Q8N0Y5	310 aa		12.82	□□□□□ -0.36
CCM2-205	ENST00000472223	STOML3	Q8TAV4	291 aa		12.82	□□□□□ -0.36
CCM2-205	ENST00000472223	SLC25A39	Q9BZJ4	359 aa	Predicted RBP	12.82	□□□□□ -0.36
CCM2-205	ENST00000472223	ZMAT5	Q9UDW3	170 aa	Known RBP	12.82	□□□□□ -0.36
CCM2-205	ENST00000472223	IGHV3OR16-13	A0A075B7E8	117 aa		12.81	□□□□□ -0.36
CCM2-205	ENST00000472223	IGHV3-74	A0A0B4J1X5	117 aa		12.81	□□□□□ -0.36
CCM2-205	ENST00000472223	HELT	A6NFD8	242 aa		12.81	□□□□□ -0.36
CCM2-205	ENST00000472223	BOLA2-SMG1P6	H3BVE0	249 aa		12.81	□□□□□ -0.36
CCM2-205	ENST00000472223	CHEK1	O14757	476 aa		12.81	□□□□□ -0.36
CCM2-205	ENST00000472223	SEC11B	P0C7V7	166 aa		12.81	□□□□□ -0.36
CCM2-205	ENST00000472223	C8orf88	P0DMB2	117 aa		12.81	□□□□□ -0.36
CCM2-205	ENST00000472223	RHOB	P62745	196 aa		12.81	□□□□□ -0.36
CCM2-205	ENST00000472223	FAM78B	Q5VT40	261 aa		12.81	□□□□□ -0.36
CCM2-205	ENST00000472223	OR10G4	Q8NGN3	311 aa		12.81	□□□□□ -0.36
CCM2-205	ENST00000472223	OR10G9	Q8NGN4	311 aa		12.81	□□□□□ -0.36
CCM2-205	ENST00000472223	OR10G7	Q8NGN6	311 aa		12.81	□□□□□ -0.36
CCM2-205	ENST00000472223	GPR82	Q96P67	336 aa		12.81	□□□□□ -0.36
CCM2-205	ENST00000472223	SH3BGRL3	Q9H299	93 aa		12.81	□□□□□ -0.36
CCM2-205	ENST00000472223	SLC25A22	Q9H936	323 aa		12.81	□□□□□ -0.36
CCM2-205	ENST00000472223	IGHV3-66	A0A0C4DH42	116 aa		12.8	□□□□□ -0.36
CCM2-205	ENST00000472223	ZNF98	A6NK75	572 aa		12.8	□□□□□ -0.36
CCM2-205	ENST00000472223	SPP1	P10451	314 aa		12.8	□□□□□ -0.36
CCM2-205	ENST00000472223	TAS2R45	P59539	299 aa		12.8	□□□□□ -0.36
CCM2-205	ENST00000472223	PAFAH1B2	P68402	229 aa		12.8	□□□□□ -0.36
CCM2-205	ENST00000472223	OR2K2	Q8NGT1	345 aa		12.8	□□□□□ -0.36
CCM2-205	ENST00000472223	TMEM37	Q8WXS4	190 aa		12.8	□□□□□ -0.36
CCM2-205	ENST00000472223	ST8SIA2	Q92186	375 aa		12.8	□□□□□ -0.36
CCM2-205	ENST00000472223	ZNF414	Q96IQ9	312 aa		12.8	□□□□□ -0.36
CCM2-205	ENST00000472223	SHANK2-AS3	Q9BTD1	123 aa		12.8	□□□□□ -0.36
CCM2-205	ENST00000472223	MRPL32	Q9BYC8	188 aa	Known RBP	12.8	□□□□□ -0.36
CCM2-205	ENST00000472223	VSIR	Q9H7M9	311 aa		12.8	□□□□□ -0.36
CCM2-205	ENST00000472223	UMAD1	C9J7I0	102 aa		12.79	□□□□□ -0.36
CCM2-205	ENST00000472223	BUB3	O43684	328 aa		12.79	□□□□□ -0.36
CCM2-205	ENST00000472223	IGLL1	P15814	213 aa		12.79	□□□□□ -0.36
CCM2-205	ENST00000472223	RPL7	P18124	248 aa	Known RBP	12.79	□□□□□ -0.36
CCM2-205	ENST00000472223	GALR1	P47211	349 aa		12.79	□□□□□ -0.36
CCM2-205	ENST00000472223	TMEM41B	Q5BJD5	291 aa		12.79	□□□□□ -0.36
CCM2-205	ENST00000472223	LCN12	Q6JVE5	192 aa		12.79	□□□□□ -0.36
CCM2-205	ENST00000472223	PATE2	Q6UY27	113 aa		12.79	□□□□□ -0.36
CCM2-205	ENST00000472223	IL34	Q6ZMJ4	242 aa		12.79	□□□□□ -0.36
CCM2-205	ENST00000472223	UHRF2	Q96PU4	802 aa		12.79	□□□□□ -0.36
CCM2-205	ENST00000472223	ACTR3C	Q9C0K3	210 aa	Predicted RBP	12.79	□□□□□ -0.36
CCM2-205	ENST00000472223		U3KQE9	123 aa		12.79	□□□□□ -0.36
CCM2-205	ENST00000472223		H3BRN7	92 aa		12.78	□□□□□ -0.36
CCM2-205	ENST00000472223	APOH	P02749	345 aa	Predicted RBP	12.78	□□□□□ -0.36
CCM2-205	ENST00000472223	DEFB114	Q30KQ6	69 aa		12.78	□□□□□ -0.36
CCM2-205	ENST00000472223	FAM122C	Q6P4D5	195 aa		12.78	□□□□□ -0.36
CCM2-205	ENST00000472223	C16orf54	Q6UWD8	224 aa		12.78	□□□□□ -0.36
CCM2-205	ENST00000472223	SIGLEC15	Q6ZMC9	328 aa		12.78	□□□□□ -0.36
CCM2-205	ENST00000472223	TCF24	Q7RTU0	167 aa		12.78	□□□□□ -0.36
CCM2-205	ENST00000472223	BPIFA4P	Q86YQ2	179 aa		12.78	□□□□□ -0.36
CCM2-205	ENST00000472223	STXBP6	Q8NFX7	210 aa		12.78	□□□□□ -0.36
CCM2-205	ENST00000472223	FUT9	Q9Y231	359 aa		12.78	□□□□□ -0.36
CCM2-205	ENST00000472223	TRAV25	A0A0B4J276	109 aa		12.77	□□□□□ -0.37
CCM2-205	ENST00000472223	ZNF785	A8K8V0	405 aa		12.77	□□□□□ -0.37
CCM2-205	ENST00000472223	DNASE2	O00115	360 aa	Predicted RBP	12.77	□□□□□ -0.37

Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms