RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 DYNLRB2Q8TF09 96 aa11.15□□□□□ -0.62
COL9A3-209ENST00000469852 RNF2Q99496 336 aa11.15□□□□□ -0.62
COL9A3-209ENST00000469852 ARL6Q9H0F7 186 aa11.15□□□□□ -0.62
COL9A3-209ENST00000469852 CYTL1Q9NRR1 136 aa11.15□□□□□ -0.62
COL9A3-209ENST00000469852 RABAC1Q9UI14 185 aa11.15□□□□□ -0.62
COL9A3-209ENST00000469852 PXMP4Q9Y6I8 212 aa11.15□□□□□ -0.62
COL9A3-209ENST00000469852 MPDU1O75352 247 aa11.14□□□□□ -0.63
COL9A3-209ENST00000469852 IFNA5P01569 189 aa11.14□□□□□ -0.63
COL9A3-209ENST00000469852 RPL29P47914 159 aaKnown RBP11.14□□□□□ -0.63
COL9A3-209ENST00000469852 PLP1P60201 277 aa11.14□□□□□ -0.63
COL9A3-209ENST00000469852 ZNF345Q14585 488 aa11.14□□□□□ -0.63
COL9A3-209ENST00000469852 GCSAMLQ5JQS6 135 aa11.14□□□□□ -0.63
COL9A3-209ENST00000469852 TMEM61Q8N0U2 210 aa11.14□□□□□ -0.63
COL9A3-209ENST00000469852 TMEM37Q8WXS4 190 aa11.14□□□□□ -0.63
COL9A3-209ENST00000469852 UHRF2Q96PU4 802 aa11.14□□□□□ -0.63
COL9A3-209ENST00000469852 PARD6GQ9BYG4 376 aaPredicted RBP11.14□□□□□ -0.63
COL9A3-209ENST00000469852 SLC39A9Q9NUM3 307 aa11.14□□□□□ -0.63
COL9A3-209ENST00000469852 BUB3O43684 328 aa11.13□□□□□ -0.63
COL9A3-209ENST00000469852 CFDP00746 253 aaPredicted RBP11.13□□□□□ -0.63
COL9A3-209ENST00000469852 OR5G3P0C626 314 aa11.13□□□□□ -0.63
COL9A3-209ENST00000469852 B2MP61769 119 aa11.13□□□□□ -0.63
COL9A3-209ENST00000469852 EGFEM1PQ0D2K5 195 aa11.13□□□□□ -0.63
COL9A3-209ENST00000469852 RAB31Q13636 194 aa11.13□□□□□ -0.63
COL9A3-209ENST00000469852 LGALSLQ3ZCW2 172 aaPredicted RBP11.13□□□□□ -0.63
COL9A3-209ENST00000469852 MORN5Q5VZ52 161 aa11.13□□□□□ -0.63
COL9A3-209ENST00000469852 LEMD1Q68G75 181 aa11.13□□□□□ -0.63
COL9A3-209ENST00000469852 HSD17B11Q8NBQ5 300 aa11.13□□□□□ -0.63
COL9A3-209ENST00000469852 TECRQ9NZ01 308 aaKnown RBP11.13□□□□□ -0.63
COL9A3-209ENST00000469852 ZNF785A8K8V0 405 aa11.12□□□□□ -0.63
COL9A3-209ENST00000469852 H3BRN7 92 aa11.12□□□□□ -0.63
COL9A3-209ENST00000469852 HYPMO75409 117 aa11.12□□□□□ -0.63
COL9A3-209ENST00000469852 PRB2P02812 416 aaPredicted RBP11.12□□□□□ -0.63
COL9A3-209ENST00000469852 KPRPQ5T749 579 aaPredicted RBP11.12□□□□□ -0.63
COL9A3-209ENST00000469852 FAM90A2PQ658T7 463 aa11.12□□□□□ -0.63
COL9A3-209ENST00000469852 C16orf54Q6UWD8 224 aa11.12□□□□□ -0.63
COL9A3-209ENST00000469852 SCGB1C1Q8TD33 95 aa11.12□□□□□ -0.63
COL9A3-209ENST00000469852 GLMPQ8WWB7 406 aa11.12□□□□□ -0.63
COL9A3-209ENST00000469852 SCRT1Q9BWW7 348 aa11.12□□□□□ -0.63
COL9A3-209ENST00000469852 GPR61Q9BZJ8 451 aa11.12□□□□□ -0.63
COL9A3-209ENST00000469852 SH3BGRL3Q9H299 93 aa11.12□□□□□ -0.63
COL9A3-209ENST00000469852 ARV1Q9H2C2 271 aa11.12□□□□□ -0.63
COL9A3-209ENST00000469852 HIGD1AQ9Y241 93 aa11.12□□□□□ -0.63
COL9A3-209ENST00000469852 ATP6V0CP27449 155 aa11.11□□□□□ -0.63
COL9A3-209ENST00000469852 ZNF266Q14584 549 aa11.11□□□□□ -0.63
COL9A3-209ENST00000469852 ZFP69Q49AA0 526 aa11.11□□□□□ -0.63
COL9A3-209ENST00000469852 TMUB2Q71RG4 321 aa11.11□□□□□ -0.63
COL9A3-209ENST00000469852 TCF24Q7RTU0 167 aa11.11□□□□□ -0.63
COL9A3-209ENST00000469852 ARPC5LQ9BPX5 153 aa11.11□□□□□ -0.63
COL9A3-209ENST00000469852 SLC25A39Q9BZJ4 359 aaPredicted RBP11.11□□□□□ -0.63
COL9A3-209ENST00000469852 IGKV3-7A0A075B6H7 116 aa11.1□□□□□ -0.63
COL9A3-209ENST00000469852 A0A0D9SG52 128 aa11.1□□□□□ -0.63
COL9A3-209ENST00000469852 A0A1W2PS18 150 aa11.1□□□□□ -0.63
COL9A3-209ENST00000469852 ZNF98A6NK75 572 aa11.1□□□□□ -0.63
COL9A3-209ENST00000469852 C17orf112F2Z3M2 114 aa11.1□□□□□ -0.63
COL9A3-209ENST00000469852 BCL2L11O43521 198 aa11.1□□□□□ -0.63
COL9A3-209ENST00000469852 COX7A2P2O60397 106 aa11.1□□□□□ -0.63
COL9A3-209ENST00000469852 NKX2-5P52952 324 aaPredicted RBP11.1□□□□□ -0.63
COL9A3-209ENST00000469852 LAMTOR1Q6IAA8 161 aa11.1□□□□□ -0.63
COL9A3-209ENST00000469852 LCN12Q6JVE5 192 aa11.1□□□□□ -0.63
COL9A3-209ENST00000469852 Q6ZRG5 221 aa11.1□□□□□ -0.63
COL9A3-209ENST00000469852 C9orf62Q8N4C0 152 aa11.1□□□□□ -0.63
COL9A3-209ENST00000469852 ZNF709Q8N972 641 aa11.1□□□□□ -0.63
COL9A3-209ENST00000469852 OR2K2Q8NGT1 345 aa11.1□□□□□ -0.63
COL9A3-209ENST00000469852 PPP1R14BQ96C90 147 aa11.1□□□□□ -0.63
COL9A3-209ENST00000469852 HYLS1Q96M11 299 aa11.1□□□□□ -0.63
COL9A3-209ENST00000469852 PRR25Q96S07 402 aa11.1□□□□□ -0.63
COL9A3-209ENST00000469852 SHANK2-AS3Q9BTD1 123 aa11.1□□□□□ -0.63
COL9A3-209ENST00000469852 SLC25A22Q9H936 323 aa11.1□□□□□ -0.63
COL9A3-209ENST00000469852 SORL1Q92673 2214 aa11.1□□□□□ -0.63
COL9A3-209ENST00000469852 PRKDCP78527 4128 aaKnown RBP11.09□□□□□ -0.63
COL9A3-209ENST00000469852 TAAR5O14804 337 aa11.09□□□□□ -0.63
COL9A3-209ENST00000469852 FFAR4Q5NUL3 377 aa11.09□□□□□ -0.63
COL9A3-209ENST00000469852 PXDC1Q5TGL8 231 aa11.09□□□□□ -0.63
COL9A3-209ENST00000469852 C10orf113Q5VZT2 155 aa11.09□□□□□ -0.63
COL9A3-209ENST00000469852 SPATA31B1PQ5VZV4 182 aa11.09□□□□□ -0.63
COL9A3-209ENST00000469852 LINC00305Q7Z4B0 112 aa11.09□□□□□ -0.63
COL9A3-209ENST00000469852 GBGT1Q8N5D6 347 aa11.09□□□□□ -0.63
COL9A3-209ENST00000469852 NARS2Q96I59 477 aaKnown RBP11.09□□□□□ -0.63
COL9A3-209ENST00000469852 C17orf77Q96MU5 243 aa11.09□□□□□ -0.63
COL9A3-209ENST00000469852 SLC25A32Q9H2D1 315 aa11.09□□□□□ -0.63
COL9A3-209ENST00000469852 DNAJC4Q9NNZ3 241 aa11.09□□□□□ -0.63
COL9A3-209ENST00000469852 ZNF256Q9Y2P7 627 aaPredicted RBP11.09□□□□□ -0.63
COL9A3-209ENST00000469852 TIMM9Q9Y5J7 89 aa11.09□□□□□ -0.63
COL9A3-209ENST00000469852 BORCS7-ASMTA0A0B4J1R7 106 aa11.08□□□□□ -0.64
COL9A3-209ENST00000469852 TRAV5A0A0B4J249 113 aa11.08□□□□□ -0.64
COL9A3-209ENST00000469852 TSPAN4O14817 238 aa11.08□□□□□ -0.64
COL9A3-209ENST00000469852 EIF3GO75821 320 aaKnown RBP eCLIP11.08□□□□□ -0.64
COL9A3-209ENST00000469852 GP9P14770 177 aa11.08□□□□□ -0.64
COL9A3-209ENST00000469852 GUCA2BQ16661 112 aa11.08□□□□□ -0.64
COL9A3-209ENST00000469852 SIGLEC15Q6ZMC9 328 aa11.08□□□□□ -0.64
COL9A3-209ENST00000469852 RBPMS2Q6ZRY4 209 aaKnown RBP11.08□□□□□ -0.64
COL9A3-209ENST00000469852 GRAMD2BQ96HH9 432 aa11.08□□□□□ -0.64
COL9A3-209ENST00000469852 TMEM231Q9H6L2 316 aa11.08□□□□□ -0.64
COL9A3-209ENST00000469852 SMAD5-AS1Q9Y6J3 95 aa11.08□□□□□ -0.64
COL9A3-209ENST00000469852 ELOA3CA0A087WX78 387 aaPredicted RBP11.07□□□□□ -0.64
COL9A3-209ENST00000469852 TRAV25A0A0B4J276 109 aa11.07□□□□□ -0.64
COL9A3-209ENST00000469852 KANTRA0A1W2PQU2 76 aa11.07□□□□□ -0.64
COL9A3-209ENST00000469852 PFDN1O60925 122 aa11.07□□□□□ -0.64
COL9A3-209ENST00000469852 JTBO76095 146 aa11.07□□□□□ -0.64
COL9A3-209ENST00000469852 BMI1P35226 326 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms