RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 SLC39A9Q9NUM3 307 aa11.52□□□□□ -0.57
NPHP4-205ENST00000466897 PXMP4Q9Y6I8 212 aa11.52□□□□□ -0.57
NPHP4-205ENST00000466897 KANTRA0A1W2PQU2 76 aa11.51□□□□□ -0.57
NPHP4-205ENST00000466897 PFDN1O60925 122 aa11.51□□□□□ -0.57
NPHP4-205ENST00000466897 HYPMO75409 117 aa11.51□□□□□ -0.57
NPHP4-205ENST00000466897 SAP30O75446 220 aa11.51□□□□□ -0.57
NPHP4-205ENST00000466897 IGLV1-51P01701 117 aa11.51□□□□□ -0.57
NPHP4-205ENST00000466897 CD5P06127 495 aa11.51□□□□□ -0.57
NPHP4-205ENST00000466897 MIC13Q5XKP0 118 aa11.51□□□□□ -0.57
NPHP4-205ENST00000466897 RPL7L1Q6DKI1 246 aaKnown RBP11.51□□□□□ -0.57
NPHP4-205ENST00000466897 TMUB2Q71RG4 321 aa11.51□□□□□ -0.57
NPHP4-205ENST00000466897 GNPNAT1Q96EK6 184 aaPredicted RBP11.51□□□□□ -0.57
NPHP4-205ENST00000466897 PFDN5Q99471 154 aa11.51□□□□□ -0.57
NPHP4-205ENST00000466897 ARV1Q9H2C2 271 aa11.51□□□□□ -0.57
NPHP4-205ENST00000466897 RNF24Q9Y225 148 aa11.51□□□□□ -0.57
NPHP4-205ENST00000466897 CHEK1O14757 476 aa11.5□□□□□ -0.57
NPHP4-205ENST00000466897 ZNF207O43670 478 aaKnown RBP11.5□□□□□ -0.57
NPHP4-205ENST00000466897 IGLL1P15814 213 aa11.5□□□□□ -0.57
NPHP4-205ENST00000466897 C1orf194Q5T5A4 169 aa11.5□□□□□ -0.57
NPHP4-205ENST00000466897 C9orf62Q8N4C0 152 aa11.5□□□□□ -0.57
NPHP4-205ENST00000466897 OR1L4Q8NGR5 311 aa11.5□□□□□ -0.57
NPHP4-205ENST00000466897 OR2G3Q8NGZ4 309 aa11.5□□□□□ -0.57
NPHP4-205ENST00000466897 GATAD1Q8WUU5 269 aa11.5□□□□□ -0.57
NPHP4-205ENST00000466897 RSG1Q9BU20 258 aa11.5□□□□□ -0.57
NPHP4-205ENST00000466897 PBDC1Q9BVG4 233 aa11.5□□□□□ -0.57
NPHP4-205ENST00000466897 RHPN1-AS1Q9BWJ2 59 aa11.5□□□□□ -0.57
NPHP4-205ENST00000466897 BUB3O43684 328 aa11.49□□□□□ -0.57
NPHP4-205ENST00000466897 ORM2P19652 201 aa11.49□□□□□ -0.57
NPHP4-205ENST00000466897 EDN2P20800 178 aa11.49□□□□□ -0.57
NPHP4-205ENST00000466897 ATP6V0CP27449 155 aa11.49□□□□□ -0.57
NPHP4-205ENST00000466897 EIF5AP63241 154 aaKnown RBP11.49□□□□□ -0.57
NPHP4-205ENST00000466897 SERF2P84101 59 aa11.49□□□□□ -0.57
NPHP4-205ENST00000466897 DEFB114Q30KQ6 69 aa11.49□□□□□ -0.57
NPHP4-205ENST00000466897 OR1B1Q8NGR6 318 aa11.49□□□□□ -0.57
NPHP4-205ENST00000466897 DYNLRB2Q8TF09 96 aa11.49□□□□□ -0.57
NPHP4-205ENST00000466897 GRAMD2BQ96HH9 432 aa11.49□□□□□ -0.57
NPHP4-205ENST00000466897 DNAJC4Q9NNZ3 241 aa11.49□□□□□ -0.57
NPHP4-205ENST00000466897 MLXQ9UH92 298 aa11.49□□□□□ -0.57
NPHP4-205ENST00000466897 HIGD1AQ9Y241 93 aa11.49□□□□□ -0.57
NPHP4-205ENST00000466897 TRAV25A0A0B4J276 109 aa11.48□□□□□ -0.57
NPHP4-205ENST00000466897 H3BRN7 92 aa11.48□□□□□ -0.57
NPHP4-205ENST00000466897 COX7A2P2O60397 106 aa11.48□□□□□ -0.57
NPHP4-205ENST00000466897 APOHP02749 345 aaPredicted RBP11.48□□□□□ -0.57
NPHP4-205ENST00000466897 C4BPBP20851 252 aa11.48□□□□□ -0.57
NPHP4-205ENST00000466897 SAMD5Q5TGI4 173 aa11.48□□□□□ -0.57
NPHP4-205ENST00000466897 C16orf54Q6UWD8 224 aa11.48□□□□□ -0.57
NPHP4-205ENST00000466897 PATE2Q6UY27 113 aa11.48□□□□□ -0.57
NPHP4-205ENST00000466897 HSD17B11Q8NBQ5 300 aa11.48□□□□□ -0.57
NPHP4-205ENST00000466897 STOML3Q8TAV4 291 aa11.48□□□□□ -0.57
NPHP4-205ENST00000466897 TMEM37Q8WXS4 190 aa11.48□□□□□ -0.57
NPHP4-205ENST00000466897 ST8SIA2Q92186 375 aa11.48□□□□□ -0.57
NPHP4-205ENST00000466897 SHANK2-AS3Q9BTD1 123 aa11.48□□□□□ -0.57
NPHP4-205ENST00000466897 SLC25A39Q9BZJ4 359 aaPredicted RBP11.48□□□□□ -0.57
NPHP4-205ENST00000466897 CMYA5Q8N3K9 4069 aa11.47□□□□□ -0.57
NPHP4-205ENST00000466897 OR5G3P0C626 314 aa11.47□□□□□ -0.57
NPHP4-205ENST00000466897 EGFEM1PQ0D2K5 195 aa11.47□□□□□ -0.57
NPHP4-205ENST00000466897 C10orf113Q5VZT2 155 aa11.47□□□□□ -0.57
NPHP4-205ENST00000466897 FAM90A2PQ658T7 463 aa11.47□□□□□ -0.57
NPHP4-205ENST00000466897 LAMTOR1Q6IAA8 161 aa11.47□□□□□ -0.57
NPHP4-205ENST00000466897 LCN12Q6JVE5 192 aa11.47□□□□□ -0.57
NPHP4-205ENST00000466897 GLMPQ8WWB7 406 aa11.47□□□□□ -0.57
NPHP4-205ENST00000466897 RNF2Q99496 336 aa11.47□□□□□ -0.57
NPHP4-205ENST00000466897 DOK5Q9P104 306 aa11.47□□□□□ -0.57
NPHP4-205ENST00000466897 ZMAT5Q9UDW3 170 aaKnown RBP11.47□□□□□ -0.57
NPHP4-205ENST00000466897 ZNF98A6NK75 572 aa11.46□□□□□ -0.57
NPHP4-205ENST00000466897 SPP1P10451 314 aa11.46□□□□□ -0.57
NPHP4-205ENST00000466897 CD300EQ496F6 205 aaPredicted RBP11.46□□□□□ -0.57
NPHP4-205ENST00000466897 OXLD1Q5BKU9 147 aa11.46□□□□□ -0.57
NPHP4-205ENST00000466897 FFAR4Q5NUL3 377 aa11.46□□□□□ -0.57
NPHP4-205ENST00000466897 LINC00305Q7Z4B0 112 aa11.46□□□□□ -0.57
NPHP4-205ENST00000466897 PPP1R14BQ96C90 147 aa11.46□□□□□ -0.57
NPHP4-205ENST00000466897 GPR82Q96P67 336 aa11.46□□□□□ -0.57
NPHP4-205ENST00000466897 ZNF471Q9BX82 626 aaPredicted RBP11.46□□□□□ -0.57
NPHP4-205ENST00000466897 MRPL32Q9BYC8 188 aaKnown RBP11.46□□□□□ -0.57
NPHP4-205ENST00000466897 NOTCH3Q9UM47 2321 aa11.45□□□□□ -0.58
NPHP4-205ENST00000466897 IGHV3-49A0A0A0MS15 119 aa11.45□□□□□ -0.58
NPHP4-205ENST00000466897 HELTA6NFD8 242 aa11.45□□□□□ -0.58
NPHP4-205ENST00000466897 TSPAN4O14817 238 aa11.45□□□□□ -0.58
NPHP4-205ENST00000466897 MBP02144 154 aa11.45□□□□□ -0.58
NPHP4-205ENST00000466897 TPT1P13693 172 aaKnown RBP11.45□□□□□ -0.58
NPHP4-205ENST00000466897 M6PRP20645 277 aa11.45□□□□□ -0.58
NPHP4-205ENST00000466897 ACOT6Q3I5F7 207 aaPredicted RBP11.45□□□□□ -0.58
NPHP4-205ENST00000466897 KPRPQ5T749 579 aaPredicted RBP11.45□□□□□ -0.58
NPHP4-205ENST00000466897 SLC51BQ86UW2 128 aa11.45□□□□□ -0.58
NPHP4-205ENST00000466897 BAP18Q8IXM2 172 aa11.45□□□□□ -0.58
NPHP4-205ENST00000466897 UHRF2Q96PU4 802 aa11.45□□□□□ -0.58
NPHP4-205ENST00000466897 SH3BGRL3Q9H299 93 aa11.45□□□□□ -0.58
NPHP4-205ENST00000466897 TRAV2A0A0B4J234 112 aa11.44□□□□□ -0.58
NPHP4-205ENST00000466897 SEC11BP0C7V7 166 aa11.44□□□□□ -0.58
NPHP4-205ENST00000466897 TCF24Q7RTU0 167 aa11.44□□□□□ -0.58
NPHP4-205ENST00000466897 TMEM61Q8N0U2 210 aa11.44□□□□□ -0.58
NPHP4-205ENST00000466897 SPAG8Q99932 426 aaPredicted RBP11.44□□□□□ -0.58
NPHP4-205ENST00000466897 SCRT1Q9BWW7 348 aa11.44□□□□□ -0.58
NPHP4-205ENST00000466897 SLC25A32Q9H2D1 315 aa11.44□□□□□ -0.58
NPHP4-205ENST00000466897 SORL1Q92673 2214 aa11.43□□□□□ -0.58
NPHP4-205ENST00000466897 IGHV3OR16-13A0A075B7E8 117 aa11.43□□□□□ -0.58
NPHP4-205ENST00000466897 IGHV3-74A0A0B4J1X5 117 aa11.43□□□□□ -0.58
NPHP4-205ENST00000466897 IGHV3-66A0A0C4DH42 116 aa11.43□□□□□ -0.58
NPHP4-205ENST00000466897 G3V4G9 280 aa11.43□□□□□ -0.58
NPHP4-205ENST00000466897 RPL7P18124 248 aaKnown RBP11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms