RNA–Protein interactions for RNA: ENST00000444951.5

LIME1-202, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3

Gene LIME1, Length 451 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-202ENST00000444951 K7EIL1 84 aa13.07□□□□□ -0.32
LIME1-202ENST00000444951 FOLR2P14207 255 aa13.07□□□□□ -0.32
LIME1-202ENST00000444951 NPPCP23582 126 aa13.07□□□□□ -0.32
LIME1-202ENST00000444951 RPL29P47914 159 aaKnown RBP13.07□□□□□ -0.32
LIME1-202ENST00000444951 ELLP55199 621 aaPredicted RBP13.07□□□□□ -0.32
LIME1-202ENST00000444951 B2MP61769 119 aa13.07□□□□□ -0.32
LIME1-202ENST00000444951 PARD6GQ9BYG4 376 aaPredicted RBP13.07□□□□□ -0.32
LIME1-202ENST00000444951 SLC39A9Q9NUM3 307 aa13.07□□□□□ -0.32
LIME1-202ENST00000444951 RABAC1Q9UI14 185 aa13.07□□□□□ -0.32
LIME1-202ENST00000444951 A8MWP6 167 aa13.06□□□□□ -0.32
LIME1-202ENST00000444951 K7EMT4 169 aa13.06□□□□□ -0.32
LIME1-202ENST00000444951 COX7A2P2O60397 106 aa13.06□□□□□ -0.32
LIME1-202ENST00000444951 HYPMO75409 117 aa13.06□□□□□ -0.32
LIME1-202ENST00000444951 JTBO76095 146 aa13.06□□□□□ -0.32
LIME1-202ENST00000444951 CFDP00746 253 aaPredicted RBP13.06□□□□□ -0.32
LIME1-202ENST00000444951 APOHP02749 345 aaPredicted RBP13.06□□□□□ -0.32
LIME1-202ENST00000444951 CSN3P07498 182 aa13.06□□□□□ -0.32
LIME1-202ENST00000444951 CBLN1P23435 193 aa13.06□□□□□ -0.32
LIME1-202ENST00000444951 ATP6V0CP27449 155 aa13.06□□□□□ -0.32
LIME1-202ENST00000444951 KRTAP10-11P60412 298 aa13.06□□□□□ -0.32
LIME1-202ENST00000444951 FFAR4Q5NUL3 377 aa13.06□□□□□ -0.32
LIME1-202ENST00000444951 LAMTOR1Q6IAA8 161 aa13.06□□□□□ -0.32
LIME1-202ENST00000444951 IL34Q6ZMJ4 242 aa13.06□□□□□ -0.32
LIME1-202ENST00000444951 Q6ZRG5 221 aa13.06□□□□□ -0.32
LIME1-202ENST00000444951 SH3BGRL3Q9H299 93 aa13.06□□□□□ -0.32
LIME1-202ENST00000444951 IGHV7-4-1A0A0J9YVY3 117 aa13.05□□□□□ -0.32
LIME1-202ENST00000444951 HNRNPCP07910 306 aaKnown RBP eCLIP13.05□□□□□ -0.32
LIME1-202ENST00000444951 PRR20EP86478 221 aa13.05□□□□□ -0.32
LIME1-202ENST00000444951 PRR20CP86479 221 aa13.05□□□□□ -0.32
LIME1-202ENST00000444951 PRR20DP86480 221 aa13.05□□□□□ -0.32
LIME1-202ENST00000444951 PRR20BP86481 221 aa13.05□□□□□ -0.32
LIME1-202ENST00000444951 PRR20AP86496 221 aa13.05□□□□□ -0.32
LIME1-202ENST00000444951 ADAMTSL5Q6ZMM2 481 aa13.05□□□□□ -0.32
LIME1-202ENST00000444951 DYNLRB2Q8TF09 96 aa13.05□□□□□ -0.32
LIME1-202ENST00000444951 NARS2Q96I59 477 aaKnown RBP13.05□□□□□ -0.32
LIME1-202ENST00000444951 KCNIP2Q9NS61 270 aa13.05□□□□□ -0.32
LIME1-202ENST00000444951 SMPXQ9UHP9 88 aa13.05□□□□□ -0.32
LIME1-202ENST00000444951 HIGD1AQ9Y241 93 aa13.05□□□□□ -0.32
LIME1-202ENST00000444951 BOLA1Q9Y3E2 137 aa13.05□□□□□ -0.32
LIME1-202ENST00000444951 NBEAL2Q6ZNJ1 2754 aa13.04□□□□□ -0.32
LIME1-202ENST00000444951 GCSAMLQ5JQS6 135 aa13.04□□□□□ -0.32
LIME1-202ENST00000444951 PATE2Q6UY27 113 aa13.04□□□□□ -0.32
LIME1-202ENST00000444951 ST8SIA2Q92186 375 aa13.04□□□□□ -0.32
LIME1-202ENST00000444951 UHRF2Q96PU4 802 aa13.04□□□□□ -0.32
LIME1-202ENST00000444951 RHPN1-AS1Q9BWJ2 59 aa13.04□□□□□ -0.32
LIME1-202ENST00000444951 MRPL27Q9P0M9 148 aaKnown RBP13.04□□□□□ -0.32
LIME1-202ENST00000444951 CRYBB3P26998 211 aa13.03□□□□□ -0.32
LIME1-202ENST00000444951 C10orf113Q5VZT2 155 aa13.03□□□□□ -0.32
LIME1-202ENST00000444951 LEMD1Q68G75 181 aa13.03□□□□□ -0.32
LIME1-202ENST00000444951 MARC2Q969Z3 335 aa13.03□□□□□ -0.32
LIME1-202ENST00000444951 MCRIP2Q9BUT9 160 aaKnown RBP13.03□□□□□ -0.32
LIME1-202ENST00000444951 ARV1Q9H2C2 271 aa13.03□□□□□ -0.32
LIME1-202ENST00000444951 SLC25A32Q9H2D1 315 aa13.03□□□□□ -0.32
LIME1-202ENST00000444951 SLC25A22Q9H936 323 aa13.03□□□□□ -0.32
LIME1-202ENST00000444951 MLXQ9UH92 298 aa13.03□□□□□ -0.32
LIME1-202ENST00000444951 CHEK1O14757 476 aa13.02□□□□□ -0.33
LIME1-202ENST00000444951 C4BPBP20851 252 aa13.02□□□□□ -0.33
LIME1-202ENST00000444951 PLP1P60201 277 aa13.02□□□□□ -0.33
LIME1-202ENST00000444951 C9orf66Q5T8R8 295 aa13.02□□□□□ -0.33
LIME1-202ENST00000444951 PXDC1Q5TGL8 231 aa13.02□□□□□ -0.33
LIME1-202ENST00000444951 OR1L4Q8NGR5 311 aa13.02□□□□□ -0.33
LIME1-202ENST00000444951 OR2G3Q8NGZ4 309 aa13.02□□□□□ -0.33
LIME1-202ENST00000444951 TMEM37Q8WXS4 190 aa13.02□□□□□ -0.33
LIME1-202ENST00000444951 GNPNAT1Q96EK6 184 aaPredicted RBP13.02□□□□□ -0.33
LIME1-202ENST00000444951 SCRT1Q9BWW7 348 aa13.02□□□□□ -0.33
LIME1-202ENST00000444951 DNAJC4Q9NNZ3 241 aa13.02□□□□□ -0.33
LIME1-202ENST00000444951 TIMM9Q9Y5J7 89 aa13.02□□□□□ -0.33
LIME1-202ENST00000444951 IGKV3-7A0A075B6H7 116 aa13.01□□□□□ -0.33
LIME1-202ENST00000444951 C8orf88P0DMB2 117 aa13.01□□□□□ -0.33
LIME1-202ENST00000444951 LINC00305Q7Z4B0 112 aa13.01□□□□□ -0.33
LIME1-202ENST00000444951 GRAMD2BQ96HH9 432 aa13.01□□□□□ -0.33
LIME1-202ENST00000444951 RNF2Q99496 336 aa13.01□□□□□ -0.33
LIME1-202ENST00000444951 PSMG3Q9BT73 122 aaPredicted RBP13.01□□□□□ -0.33
LIME1-202ENST00000444951 SLC25A39Q9BZJ4 359 aaPredicted RBP13.01□□□□□ -0.33
LIME1-202ENST00000444951 VSIRQ9H7M9 311 aa13.01□□□□□ -0.33
LIME1-202ENST00000444951 PFDN2Q9UHV9 154 aa13.01□□□□□ -0.33
LIME1-202ENST00000444951 ELOA3CA0A087WX78 387 aaPredicted RBP13□□□□□ -0.33
LIME1-202ENST00000444951 A0A1W2PS18 150 aa13□□□□□ -0.33
LIME1-202ENST00000444951 TPT1P13693 172 aaKnown RBP13□□□□□ -0.33
LIME1-202ENST00000444951 BMI1P35226 326 aa13□□□□□ -0.33
LIME1-202ENST00000444951 RAB2AP61019 212 aa13□□□□□ -0.33
LIME1-202ENST00000444951 RPL11P62913 178 aaKnown RBP13□□□□□ -0.33
LIME1-202ENST00000444951 EIF5AP63241 154 aaKnown RBP13□□□□□ -0.33
LIME1-202ENST00000444951 ACOT6Q3I5F7 207 aaPredicted RBP13□□□□□ -0.33
LIME1-202ENST00000444951 PFDN5Q99471 154 aa13□□□□□ -0.33
LIME1-202ENST00000444951 TMEM231Q9H6L2 316 aa13□□□□□ -0.33
LIME1-202ENST00000444951 TRAV5A0A0B4J249 113 aa12.99□□□□□ -0.33
LIME1-202ENST00000444951 ZNF98A6NK75 572 aa12.99□□□□□ -0.33
LIME1-202ENST00000444951 EIF3GO75821 320 aaKnown RBP eCLIP12.99□□□□□ -0.33
LIME1-202ENST00000444951 DEFB114Q30KQ6 69 aa12.99□□□□□ -0.33
LIME1-202ENST00000444951 CD300EQ496F6 205 aaPredicted RBP12.99□□□□□ -0.33
LIME1-202ENST00000444951 FAM78BQ5VT40 261 aa12.99□□□□□ -0.33
LIME1-202ENST00000444951 MORN5Q5VZ52 161 aa12.99□□□□□ -0.33
LIME1-202ENST00000444951 SPATA31B1PQ5VZV4 182 aa12.99□□□□□ -0.33
LIME1-202ENST00000444951 FAM122CQ6P4D5 195 aa12.99□□□□□ -0.33
LIME1-202ENST00000444951 TCF24Q7RTU0 167 aa12.99□□□□□ -0.33
LIME1-202ENST00000444951 SLC51BQ86UW2 128 aa12.99□□□□□ -0.33
LIME1-202ENST00000444951 BAP18Q8IXM2 172 aa12.99□□□□□ -0.33
LIME1-202ENST00000444951 SHANK2-AS3Q9BTD1 123 aa12.99□□□□□ -0.33
LIME1-202ENST00000444951 U3KQE9 123 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 81.7 ms