RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 ANK2Q01484 3957 aa11.99□□□□□ -0.49
USP40-206ENST00000443711 A0A1W2PS18 150 aa11.99□□□□□ -0.49
USP40-206ENST00000443711 SAP30O75446 220 aa11.99□□□□□ -0.49
USP40-206ENST00000443711 OR5G3P0C626 314 aa11.99□□□□□ -0.49
USP40-206ENST00000443711 ATP6V0CP27449 155 aa11.99□□□□□ -0.49
USP40-206ENST00000443711 NKX2-5P52952 324 aaPredicted RBP11.99□□□□□ -0.49
USP40-206ENST00000443711 C9orf66Q5T8R8 295 aa11.99□□□□□ -0.49
USP40-206ENST00000443711 OR1L4Q8NGR5 311 aa11.99□□□□□ -0.49
USP40-206ENST00000443711 PSMG3Q9BT73 122 aaPredicted RBP11.99□□□□□ -0.49
USP40-206ENST00000443711 ARV1Q9H2C2 271 aa11.99□□□□□ -0.49
USP40-206ENST00000443711 DOK5Q9P104 306 aa11.99□□□□□ -0.49
USP40-206ENST00000443711 HIGD1AQ9Y241 93 aa11.99□□□□□ -0.49
USP40-206ENST00000443711 DNHD1Q96M86 4753 aa11.99□□□□□ -0.49
USP40-206ENST00000443711 ELOA3CA0A087WX78 387 aaPredicted RBP11.98□□□□□ -0.49
USP40-206ENST00000443711 COX7A2P2O60397 106 aa11.98□□□□□ -0.49
USP40-206ENST00000443711 EDN2P20800 178 aa11.98□□□□□ -0.49
USP40-206ENST00000443711 INSL3P51460 131 aa11.98□□□□□ -0.49
USP40-206ENST00000443711 FFAR4Q5NUL3 377 aa11.98□□□□□ -0.49
USP40-206ENST00000443711 LAMTOR1Q6IAA8 161 aa11.98□□□□□ -0.49
USP40-206ENST00000443711 ADAMTSL5Q6ZMM2 481 aa11.98□□□□□ -0.49
USP40-206ENST00000443711 PPP1R14BQ96C90 147 aa11.98□□□□□ -0.49
USP40-206ENST00000443711 GRAMD2BQ96HH9 432 aa11.98□□□□□ -0.49
USP40-206ENST00000443711 PFDN5Q99471 154 aa11.98□□□□□ -0.49
USP40-206ENST00000443711 RHPN1-AS1Q9BWJ2 59 aa11.98□□□□□ -0.49
USP40-206ENST00000443711 GPR61Q9BZJ8 451 aa11.98□□□□□ -0.49
USP40-206ENST00000443711 TMEM231Q9H6L2 316 aa11.98□□□□□ -0.49
USP40-206ENST00000443711 DNAJC4Q9NNZ3 241 aa11.98□□□□□ -0.49
USP40-206ENST00000443711 U3KQE9 123 aa11.98□□□□□ -0.49
USP40-206ENST00000443711 NOTCH3Q9UM47 2321 aa11.98□□□□□ -0.49
USP40-206ENST00000443711 IGHV3-49A0A0A0MS15 119 aa11.97□□□□□ -0.49
USP40-206ENST00000443711 CHEK1O14757 476 aa11.97□□□□□ -0.49
USP40-206ENST00000443711 IGLL1P15814 213 aa11.97□□□□□ -0.49
USP40-206ENST00000443711 C10orf113Q5VZT2 155 aa11.97□□□□□ -0.49
USP40-206ENST00000443711 PATE2Q6UY27 113 aa11.97□□□□□ -0.49
USP40-206ENST00000443711 DYNLRB2Q8TF09 96 aa11.97□□□□□ -0.49
USP40-206ENST00000443711 TECRQ9NZ01 308 aaKnown RBP11.97□□□□□ -0.49
USP40-206ENST00000443711 IGHV3OR16-13A0A075B7E8 117 aa11.96□□□□□ -0.49
USP40-206ENST00000443711 IGHV3-74A0A0B4J1X5 117 aa11.96□□□□□ -0.49
USP40-206ENST00000443711 APOHP02749 345 aaPredicted RBP11.96□□□□□ -0.49
USP40-206ENST00000443711 SERF2P84101 59 aa11.96□□□□□ -0.49
USP40-206ENST00000443711 SLC51BQ86UW2 128 aa11.96□□□□□ -0.49
USP40-206ENST00000443711 OR2G3Q8NGZ4 309 aa11.96□□□□□ -0.49
USP40-206ENST00000443711 GATAD1Q8WUU5 269 aa11.96□□□□□ -0.49
USP40-206ENST00000443711 VSIRQ9H7M9 311 aa11.96□□□□□ -0.49
USP40-206ENST00000443711 RNF24Q9Y225 148 aa11.96□□□□□ -0.49
USP40-206ENST00000443711 RFNGQ9Y644 331 aa11.96□□□□□ -0.49
USP40-206ENST00000443711 IGHV3-66A0A0C4DH42 116 aa11.95□□□□□ -0.5
USP40-206ENST00000443711 BOLA2-SMG1P6H3BVE0 249 aa11.95□□□□□ -0.5
USP40-206ENST00000443711 BUB3O43684 328 aa11.95□□□□□ -0.5
USP40-206ENST00000443711 TPT1P13693 172 aaKnown RBP11.95□□□□□ -0.5
USP40-206ENST00000443711 DEFB114Q30KQ6 69 aa11.95□□□□□ -0.5
USP40-206ENST00000443711 ACOT6Q3I5F7 207 aaPredicted RBP11.95□□□□□ -0.5
USP40-206ENST00000443711 C1orf194Q5T5A4 169 aa11.95□□□□□ -0.5
USP40-206ENST00000443711 BAP18Q8IXM2 172 aa11.95□□□□□ -0.5
USP40-206ENST00000443711 STOML3Q8TAV4 291 aa11.95□□□□□ -0.5
USP40-206ENST00000443711 TMEM37Q8WXS4 190 aa11.95□□□□□ -0.5
USP40-206ENST00000443711 ST8SIA2Q92186 375 aa11.95□□□□□ -0.5
USP40-206ENST00000443711 RNF2Q99496 336 aa11.95□□□□□ -0.5
USP40-206ENST00000443711 SHANK2-AS3Q9BTD1 123 aa11.95□□□□□ -0.5
USP40-206ENST00000443711 SLC25A39Q9BZJ4 359 aaPredicted RBP11.95□□□□□ -0.5
USP40-206ENST00000443711 SH3BGRL3Q9H299 93 aa11.95□□□□□ -0.5
USP40-206ENST00000443711 SLC25A32Q9H2D1 315 aa11.95□□□□□ -0.5
USP40-206ENST00000443711 MLXQ9UH92 298 aa11.95□□□□□ -0.5
USP40-206ENST00000443711 ZNF98A6NK75 572 aa11.94□□□□□ -0.5
USP40-206ENST00000443711 H3BRN7 92 aa11.94□□□□□ -0.5
USP40-206ENST00000443711 IGLV1-51P01701 117 aa11.94□□□□□ -0.5
USP40-206ENST00000443711 MBP02144 154 aa11.94□□□□□ -0.5
USP40-206ENST00000443711 CD5P06127 495 aa11.94□□□□□ -0.5
USP40-206ENST00000443711 SPP1P10451 314 aa11.94□□□□□ -0.5
USP40-206ENST00000443711 GCSAMLQ5JQS6 135 aa11.94□□□□□ -0.5
USP40-206ENST00000443711 C16orf54Q6UWD8 224 aa11.94□□□□□ -0.5
USP40-206ENST00000443711 LINC00305Q7Z4B0 112 aa11.94□□□□□ -0.5
USP40-206ENST00000443711 OR2K2Q8NGT1 345 aa11.94□□□□□ -0.5
USP40-206ENST00000443711 UHRF2Q96PU4 802 aa11.94□□□□□ -0.5
USP40-206ENST00000443711 PKD1L1Q8TDX9 2849 aa11.94□□□□□ -0.5
USP40-206ENST00000443711 SEC11BP0C7V7 166 aa11.93□□□□□ -0.5
USP40-206ENST00000443711 M6PRP20645 277 aa11.93□□□□□ -0.5
USP40-206ENST00000443711 OR8I2Q8N0Y5 310 aa11.93□□□□□ -0.5
USP40-206ENST00000443711 TRAV25A0A0B4J276 109 aa11.92□□□□□ -0.5
USP40-206ENST00000443711 HELTA6NFD8 242 aa11.92□□□□□ -0.5
USP40-206ENST00000443711 WIPF1O43516 503 aa11.92□□□□□ -0.5
USP40-206ENST00000443711 RHOBP62745 196 aa11.92□□□□□ -0.5
USP40-206ENST00000443711 AKR1C8PQ5T2L2 129 aa11.92□□□□□ -0.5
USP40-206ENST00000443711 FAM78BQ5VT40 261 aa11.92□□□□□ -0.5
USP40-206ENST00000443711 EIF5AL1Q6IS14 154 aaKnown RBP11.92□□□□□ -0.5
USP40-206ENST00000443711 RBPMS2Q6ZRY4 209 aaKnown RBP11.92□□□□□ -0.5
USP40-206ENST00000443711 TCF24Q7RTU0 167 aa11.92□□□□□ -0.5
USP40-206ENST00000443711 OR10G4Q8NGN3 311 aa11.92□□□□□ -0.5
USP40-206ENST00000443711 OR10G9Q8NGN4 311 aa11.92□□□□□ -0.5
USP40-206ENST00000443711 OR10G7Q8NGN6 311 aa11.92□□□□□ -0.5
USP40-206ENST00000443711 GLMPQ8WWB7 406 aa11.92□□□□□ -0.5
USP40-206ENST00000443711 GPR82Q96P67 336 aa11.92□□□□□ -0.5
USP40-206ENST00000443711 SCRT1Q9BWW7 348 aa11.92□□□□□ -0.5
USP40-206ENST00000443711 SLC25A22Q9H936 323 aa11.92□□□□□ -0.5
USP40-206ENST00000443711 BOLA1Q9Y3E2 137 aa11.92□□□□□ -0.5
USP40-206ENST00000443711 TRRAPQ9Y4A5 3859 aa11.92□□□□□ -0.5
USP40-206ENST00000443711 A0A1W2PPV4 95 aa11.91□□□□□ -0.5
USP40-206ENST00000443711 RAB2AP61019 212 aa11.91□□□□□ -0.5
USP40-206ENST00000443711 CD300EQ496F6 205 aaPredicted RBP11.91□□□□□ -0.5
USP40-206ENST00000443711 TMEM41BQ5BJD5 291 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms